Wall clock time and date at job start Tue Mar 31 2020 08:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 H 1.09006 * 115.54872 * 29.27798 * 5 4 2 7 7 C 1.52995 * 117.50303 * 243.61453 * 5 4 2 8 8 C 1.53001 * 117.50477 * 174.98430 * 5 4 2 9 9 H 1.09000 * 117.49288 * 0.02562 * 8 5 4 10 10 C 1.50696 * 117.50478 * 214.98134 * 8 5 4 11 11 O 1.21287 * 119.99715 * 359.97438 * 10 8 5 12 12 N 1.34771 * 120.00342 * 180.02562 * 10 8 5 13 13 C 1.47420 * 125.64742 * 0.02562 * 12 10 8 14 14 C 1.54912 * 104.83454 * 204.09587 * 13 12 10 15 15 C 1.55159 * 101.57964 * 322.99376 * 14 13 12 16 16 O 1.42898 * 110.71859 * 276.96140 * 15 14 13 17 17 C 1.50697 * 110.72065 * 153.86418 * 15 14 13 18 18 H 1.07996 * 120.00324 * 241.45643 * 17 15 14 19 19 C 1.37875 * 119.99771 * 61.45070 * 17 15 14 20 20 N 1.31513 * 120.00379 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99758 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47002 * 60.00505 * 21 19 17 23 23 H 1.48502 * 109.47048 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47345 * 300.00131 * 21 19 17 25 25 C 1.47020 * 125.64881 * 179.72189 * 12 10 8 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 34 34 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 35 35 H 1.09008 * 117.49762 * 359.97438 * 7 5 4 36 36 H 1.08999 * 117.50515 * 145.01531 * 7 5 4 37 37 H 1.09002 * 110.36943 * 322.93294 * 13 12 10 38 38 H 1.09002 * 110.36722 * 85.25958 * 13 12 10 39 39 H 1.09001 * 111.00231 * 81.06549 * 14 13 12 40 40 H 1.08995 * 111.00613 * 204.91787 * 14 13 12 41 41 H 0.96708 * 113.99964 * 298.54528 * 16 15 14 42 42 H 0.97001 * 120.00177 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.87806 * 298.38973 * 25 12 10 44 44 H 1.09000 * 109.88564 * 59.55119 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.8311 1.1879 6 1 4.0719 -0.0357 0.6415 7 6 4.1698 -2.2345 1.1155 8 6 4.2804 -1.4194 2.4056 9 1 3.6647 -1.7286 3.2503 10 6 5.6324 -0.8549 2.7583 11 8 6.1134 0.0321 2.0854 12 7 6.3074 -1.3364 3.8208 13 6 5.8433 -2.4090 4.7194 14 6 6.6019 -2.1689 6.0485 15 6 7.9874 -1.6952 5.5352 16 8 8.8117 -2.8134 5.2001 17 6 8.6660 -0.8231 6.5598 18 1 8.9093 0.2016 6.3208 19 6 8.9763 -1.3335 7.8025 20 7 8.6805 -2.5814 8.0935 21 14 9.8182 -0.2526 9.0724 22 1 8.9591 0.9212 9.3710 23 1 10.0403 -1.0321 10.3167 24 1 11.1238 0.2123 8.5393 25 6 7.6312 -0.8833 4.2720 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.7517 -0.1584 2.1369 34 1 1.6055 -1.7198 1.2950 35 1 3.4814 -3.0797 1.1119 36 1 5.0749 -2.3625 0.5219 37 1 4.7675 -2.3326 4.8775 38 1 6.0987 -3.3855 4.3079 39 1 6.1178 -1.3916 6.6397 40 1 6.6918 -3.0929 6.6195 41 1 9.0018 -3.3994 5.9456 42 1 8.8992 -2.9406 8.9676 43 1 8.3707 -1.0642 3.4918 44 1 7.5970 0.1790 4.5138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:06 Heat of formation + Delta-G solvation = -82.700415 kcal Electronic energy + Delta-G solvation = -22466.389688 eV Core-core repulsion = 19190.562230 eV Total energy + Delta-G solvation = -3275.827458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -39.82668 -38.10305 -36.90652 -34.95925 -34.29597 -32.22694 -29.77407 -28.48517 -27.64638 -27.28400 -25.50736 -23.48679 -22.02563 -21.26355 -19.93555 -19.62071 -18.52918 -17.32499 -16.77747 -15.50682 -15.44915 -15.03379 -14.93168 -14.39045 -14.25679 -14.05187 -13.58532 -13.26522 -12.96373 -12.68759 -12.46648 -12.32804 -12.06278 -11.93832 -11.76227 -11.48960 -11.36695 -11.36099 -11.15059 -10.95567 -10.87976 -10.70049 -10.64219 -10.51600 -10.17055 -10.12296 -9.94704 -9.45935 -9.27157 -8.67857 -8.23773 -7.99300 -6.29638 -4.37161 2.89020 3.21571 3.26053 3.29432 3.47422 3.95139 4.26086 4.51289 4.70214 4.75333 4.91222 4.96551 4.99448 5.06793 5.25779 5.31196 5.45525 5.55198 5.57665 5.61747 5.63653 5.72816 5.73499 5.77806 5.87601 5.92647 5.98484 6.02112 6.07070 6.12666 6.23562 6.25152 6.39693 6.44944 6.70060 6.90791 6.97723 7.28871 7.34060 7.72050 8.01448 8.13845 8.63750 8.68018 9.29138 9.38219 10.77879 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.003323 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.327039 B = 8423.700741 C = 8594.087574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.085 4.085 5 C -0.121 4.121 6 H 0.119 0.881 7 C -0.150 4.150 8 C -0.181 4.181 9 H 0.120 0.880 10 C 0.550 3.450 11 O -0.557 6.557 12 N -0.604 5.604 13 C 0.097 3.903 14 C -0.135 4.135 15 C 0.247 3.753 16 O -0.585 6.585 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.123 3.877 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.060 0.940 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 -0.286 -10.139 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.122 4.122 5 C -0.140 4.140 6 H 0.137 0.863 7 C -0.187 4.187 8 C -0.202 4.202 9 H 0.138 0.862 10 C 0.338 3.662 11 O -0.437 6.437 12 N -0.336 5.336 13 C -0.026 4.026 14 C -0.174 4.174 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.001 3.999 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.951 0.351 -10.984 17.760 hybrid contribution 0.478 0.145 1.547 1.626 sum -13.473 0.496 -9.436 16.457 Atomic orbital electron populations 1.21846 0.95390 1.01543 1.01685 1.21064 0.95293 0.96542 0.98316 1.21914 1.01790 0.95705 1.01436 1.21275 0.92210 1.00566 0.98162 1.22487 0.94817 0.97361 0.99320 0.86292 1.23061 1.03221 0.94738 0.97702 1.22264 0.96753 1.07065 0.94150 0.86241 1.19216 0.85338 0.82153 0.79472 1.90643 1.69935 1.31526 1.51582 1.48552 1.20082 1.37297 1.27631 1.22501 0.98047 0.90113 0.91917 1.23307 0.97816 1.02754 0.93501 1.19462 0.86978 0.84330 0.88532 1.86137 1.72213 1.40317 1.40762 1.21476 1.39980 0.98369 0.97505 0.91837 1.24982 0.94595 0.95293 0.98130 1.69684 1.47102 1.13772 1.23001 0.86468 0.80132 0.80279 0.80069 1.20067 1.21108 1.19982 1.22069 0.82097 0.98696 0.97035 0.92717 0.92813 0.92814 0.91090 0.93032 0.92722 0.91977 0.91393 0.91696 0.88091 0.88471 0.92202 0.91939 0.91477 0.89347 0.76794 0.92166 0.92174 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.82 2.92 -90.63 -0.26 -1.08 16 3 C -0.15 -1.42 9.01 37.16 0.33 -1.08 16 4 C -0.08 -0.82 4.96 -26.74 -0.13 -0.95 16 5 C -0.12 -1.49 5.03 -90.62 -0.46 -1.95 16 6 H 0.12 1.67 5.91 -51.93 -0.31 1.36 16 7 C -0.15 -1.80 9.88 -26.73 -0.26 -2.06 16 8 C -0.18 -2.60 5.25 -91.77 -0.48 -3.08 16 9 H 0.12 1.53 7.07 -51.93 -0.37 1.16 16 10 C 0.55 10.59 7.63 -10.99 -0.08 10.51 16 11 O -0.56 -12.42 16.59 5.55 0.09 -12.33 16 12 N -0.60 -12.21 3.33 -170.52 -0.57 -12.78 16 13 C 0.10 1.77 6.68 -2.53 -0.02 1.75 16 14 C -0.14 -2.91 5.47 -24.58 -0.13 -3.04 16 15 C 0.25 5.98 0.85 -89.93 -0.08 5.90 16 16 O -0.59 -14.68 13.07 -35.23 -0.46 -15.14 16 17 C -0.54 -14.03 8.22 -34.44 -0.28 -14.31 16 18 H 0.06 1.67 7.57 -52.49 -0.40 1.28 16 19 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 20 N -0.90 -22.85 10.67 55.43 0.59 -22.26 16 21 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 C 0.12 2.82 6.23 -3.06 -0.02 2.80 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.66 6.41 -51.93 -0.33 0.33 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 35 H 0.10 0.97 8.03 -51.92 -0.42 0.55 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.92 7.01 -51.93 -0.36 0.55 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 40 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 41 H 0.38 9.52 7.46 45.56 0.34 9.86 16 42 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 43 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 44 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -28.18 351.34 -8.52 -36.70 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.82 Total: 10.89 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.63 Total: -5.59 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.02 Total: -35.04 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.37 Total: -27.47 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.18 -8.52 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.005 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds