Wall clock time and date at job start Tue Mar 31 2020 07:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 C 1.50695 * 109.47287 * 120.00725 * 2 1 3 5 5 O 1.21281 * 120.00481 * 122.93949 * 4 2 1 6 6 N 1.34780 * 119.99536 * 302.93647 * 4 2 1 7 7 C 1.47018 * 125.65342 * 4.82972 * 6 4 2 8 8 C 1.54319 * 107.27496 * 181.09599 * 7 6 4 9 9 C 1.55159 * 102.94313 * 22.19634 * 8 7 6 10 10 O 1.42895 * 111.00233 * 82.56870 * 9 8 7 11 11 C 1.50700 * 111.03755 * 206.40929 * 9 8 7 12 12 H 1.07997 * 119.99681 * 22.57085 * 11 9 8 13 13 C 1.37876 * 119.99768 * 202.56731 * 11 9 8 14 14 N 1.31510 * 119.99772 * 178.85287 * 13 11 9 15 15 Si 1.86799 * 120.00033 * 358.84934 * 13 11 9 16 16 H 1.48498 * 109.46918 * 94.55821 * 15 13 11 17 17 H 1.48505 * 109.47294 * 214.55485 * 15 13 11 18 18 H 1.48501 * 109.47269 * 334.55581 * 15 13 11 19 19 C 1.47424 * 125.64368 * 184.87635 * 6 4 2 20 20 C 1.53002 * 109.47005 * 240.00591 * 2 1 3 21 21 C 1.53775 * 113.61343 * 160.40005 * 20 2 1 22 22 C 1.53954 * 87.01977 * 220.04451 * 21 20 2 23 23 C 1.53778 * 87.11192 * 25.36281 * 22 21 20 24 24 H 1.08997 * 109.46653 * 314.87166 * 1 2 3 25 25 H 1.08996 * 109.46979 * 74.87455 * 1 2 3 26 26 H 1.08994 * 109.46818 * 194.87458 * 1 2 3 27 27 H 1.08998 * 109.46638 * 171.60241 * 3 2 1 28 28 H 1.08994 * 109.47123 * 291.60732 * 3 2 1 29 29 H 1.09005 * 109.46747 * 51.60891 * 3 2 1 30 30 H 1.08999 * 109.88226 * 300.51941 * 7 6 4 31 31 H 1.09007 * 109.87934 * 61.52243 * 7 6 4 32 32 H 1.09001 * 110.72211 * 263.83084 * 8 7 6 33 33 H 1.08997 * 110.71976 * 140.55934 * 8 7 6 34 34 H 0.96697 * 113.99930 * 62.39445 * 10 9 8 35 35 H 0.97000 * 120.00086 * 179.97438 * 14 13 11 36 36 H 1.09001 * 110.37388 * 36.99758 * 19 6 4 37 37 H 1.09001 * 110.46299 * 274.71772 * 19 6 4 38 38 H 1.09003 * 112.84848 * 291.59940 * 20 2 1 39 39 H 1.08994 * 113.61902 * 334.56181 * 21 20 2 40 40 H 1.09002 * 113.61324 * 105.47461 * 21 20 2 41 41 H 1.09008 * 113.53982 * 270.81529 * 22 21 20 42 42 H 1.08997 * 113.74509 * 139.94419 * 22 21 20 43 43 H 1.09001 * 113.62273 * 220.09164 * 23 22 21 44 44 H 1.09002 * 113.69083 * 89.19142 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7730 -1.6646 1.1198 6 7 1.6587 -0.2857 2.4536 7 6 0.6927 0.7877 2.7299 8 6 0.6042 0.9411 4.2629 9 6 1.9453 0.3324 4.7511 10 8 3.0038 1.2883 4.6628 11 6 1.8183 -0.2005 6.1550 12 1 0.8471 -0.4658 6.5460 13 6 2.9418 -0.3494 6.9401 14 7 2.8284 -0.7931 8.1729 15 14 4.6251 0.0792 6.2527 16 1 4.9714 1.4743 6.6255 17 1 5.6397 -0.8492 6.8131 18 1 4.6024 -0.0469 4.7733 19 6 2.1516 -0.8198 3.7362 20 6 2.0400 -0.7211 -1.2493 21 6 3.4968 -0.3809 -1.6054 22 6 3.0488 -0.3661 -3.0783 23 6 1.6380 -0.0336 -2.5648 24 1 -0.3632 0.7250 0.7283 25 1 -0.3633 0.2681 -0.9920 26 1 -0.3633 -0.9932 0.2638 27 1 3.1196 1.4461 0.1501 28 1 1.8044 1.9112 -0.9554 29 1 1.5594 1.9978 0.8055 30 1 1.0372 1.7204 2.2832 31 1 -0.2835 0.5212 2.3246 32 1 -0.2414 0.3784 4.6586 33 1 0.5336 1.9924 4.5418 34 1 2.8763 2.0688 5.2193 35 1 3.6189 -0.8982 8.7252 36 1 3.2089 -1.0736 3.6604 37 1 1.5725 -1.6944 4.0326 38 1 1.8325 -1.7911 -1.2348 39 1 3.8202 0.5928 -1.2377 40 1 4.2014 -1.1787 -1.3705 41 1 3.1184 -1.3394 -3.5643 42 1 3.4993 0.4336 -3.6660 43 1 0.8440 -0.5513 -3.1031 44 1 1.4508 1.0350 -2.4594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:33 Heat of formation + Delta-G solvation = -57.253875 kcal Electronic energy + Delta-G solvation = -23949.687195 eV Core-core repulsion = 20674.963182 eV Total energy + Delta-G solvation = -3274.724013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65299 -38.78844 -37.26261 -34.97284 -33.76462 -32.37729 -30.13525 -28.47337 -27.64498 -25.80135 -25.45179 -25.09339 -23.28567 -21.44285 -19.88633 -19.21407 -18.29575 -17.55304 -16.39699 -15.99580 -15.39535 -15.20117 -15.00120 -14.67962 -14.47416 -13.99472 -13.87433 -13.24486 -12.99047 -12.72935 -12.63837 -12.31217 -12.16683 -12.02294 -11.91609 -11.69072 -11.57648 -11.53318 -11.18438 -11.09351 -10.76042 -10.67492 -10.35461 -10.30843 -10.28080 -10.14253 -9.99138 -9.27684 -9.09004 -8.66884 -8.35159 -8.02030 -6.21816 -4.35712 3.07576 3.41275 3.47346 3.56146 3.77353 4.46637 4.48855 4.60119 4.62857 4.81867 4.88694 5.00889 5.04289 5.09626 5.24783 5.26321 5.30605 5.40872 5.50190 5.57636 5.68229 5.73621 5.74954 5.80014 5.85111 5.90344 5.95534 5.99797 6.07407 6.13801 6.24020 6.24344 6.31307 6.52309 6.55403 6.59355 6.70702 6.77095 7.00314 7.44152 8.08189 8.10420 8.61178 8.65216 8.79074 9.39258 10.87006 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.005091 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.495398 B = 5498.582361 C = 5878.237534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C -0.148 4.148 4 C 0.533 3.467 5 O -0.548 6.548 6 N -0.609 5.609 7 C 0.095 3.905 8 C -0.150 4.150 9 C 0.219 3.781 10 O -0.557 6.557 11 C -0.552 4.552 12 H 0.082 0.918 13 C 0.075 3.925 14 N -0.887 5.887 15 Si 0.934 3.066 16 H -0.292 1.292 17 H -0.323 1.323 18 H -0.253 1.253 19 C 0.116 3.884 20 C -0.081 4.081 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.137 4.137 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.366 0.634 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 6.026 -18.283 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 C -0.205 4.205 4 C 0.321 3.679 5 O -0.426 6.426 6 N -0.342 5.342 7 C -0.028 4.028 8 C -0.189 4.189 9 C 0.179 3.821 10 O -0.365 6.365 11 C -0.590 4.590 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.522 5.522 15 Si 0.768 3.232 16 H -0.220 1.220 17 H -0.254 1.254 18 H -0.179 1.179 19 C -0.005 4.005 20 C -0.100 4.100 21 C -0.174 4.174 22 C -0.180 4.180 23 C -0.175 4.175 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.214 0.786 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.164 4.994 -18.658 19.758 hybrid contribution 0.560 0.552 0.354 0.862 sum -3.604 5.546 -18.304 19.463 Atomic orbital electron populations 1.22065 0.93070 1.02734 1.02727 1.20638 0.96836 0.96415 0.93252 1.22101 1.01905 0.93981 1.02508 1.20134 0.80676 0.83811 0.83325 1.90652 1.37553 1.28184 1.86226 1.48615 1.43106 1.36510 1.05926 1.22407 0.91944 0.90540 0.97930 1.23283 1.01428 1.01717 0.92427 1.20199 0.82254 0.85551 0.94143 1.86426 1.46794 1.33530 1.69726 1.21190 0.96273 1.46378 0.95136 0.90033 1.25156 1.00583 0.92910 0.94419 1.69951 1.30712 1.43705 1.07819 0.85943 0.80805 0.76412 0.80027 1.21976 1.25377 1.17860 1.22845 1.00136 0.97246 0.80294 1.22323 0.96407 0.99752 0.91481 1.23035 0.96792 1.02329 0.95202 1.22819 0.96906 1.01446 0.96812 1.23042 0.96970 1.00882 0.96578 0.91072 0.91664 0.92375 0.91923 0.91503 0.91364 0.91631 0.91764 0.90311 0.90832 0.78647 0.92372 0.90905 0.90486 0.88880 0.89857 0.91318 0.90508 0.91776 0.91765 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 7.78 37.16 0.29 -1.35 16 2 C -0.07 -0.91 0.41 -155.66 -0.06 -0.97 16 3 C -0.15 -1.74 7.18 37.16 0.27 -1.48 16 4 C 0.53 9.74 6.47 -10.99 -0.07 9.67 16 5 O -0.55 -12.03 16.07 5.56 0.09 -11.94 16 6 N -0.61 -11.32 3.32 -170.52 -0.57 -11.89 16 7 C 0.09 1.43 5.12 -3.07 -0.02 1.42 16 8 C -0.15 -2.58 6.14 -24.90 -0.15 -2.74 16 9 C 0.22 4.74 0.70 -89.62 -0.06 4.68 16 10 O -0.56 -11.90 8.26 -35.23 -0.29 -12.19 16 11 C -0.55 -14.41 8.89 -34.44 -0.31 -14.72 16 12 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 15 Si 0.93 23.31 25.15 -169.99 -4.27 19.04 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.32 -8.38 7.11 56.52 0.40 -7.97 16 18 H -0.25 -6.44 4.98 56.52 0.28 -6.16 16 19 C 0.12 2.57 5.86 -2.52 -0.01 2.56 16 20 C -0.08 -1.02 2.43 -89.81 -0.22 -1.24 16 21 C -0.14 -1.70 7.14 -25.83 -0.18 -1.89 16 22 C -0.14 -1.40 8.09 -25.83 -0.21 -1.61 16 23 C -0.14 -1.31 6.39 -25.92 -0.17 -1.48 16 24 H 0.07 0.73 4.93 -51.93 -0.26 0.47 16 25 H 0.06 0.59 7.12 -51.93 -0.37 0.22 16 26 H 0.06 0.69 8.05 -51.93 -0.42 0.28 16 27 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 28 H 0.07 0.63 6.04 -51.93 -0.31 0.32 16 29 H 0.07 0.78 4.99 -51.93 -0.26 0.53 16 30 H 0.07 0.89 5.44 -51.93 -0.28 0.61 16 31 H 0.06 0.83 5.83 -51.93 -0.30 0.53 16 32 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.37 6.74 8.74 45.56 0.40 7.14 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.80 6.77 -51.93 -0.35 1.45 16 37 H 0.08 1.73 8.03 -51.93 -0.42 1.32 16 38 H 0.09 1.31 7.99 -51.93 -0.41 0.90 16 39 H 0.08 1.03 5.72 -51.93 -0.30 0.73 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.72 6.13 -51.93 -0.32 0.40 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -31.81 321.36 -6.58 -38.39 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.14 Total: 6.36 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.01 Total: -7.17 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.21 Total: -37.33 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.20 Total: -24.13 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.27 Total: 19.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.81 -6.58 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.863 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds