Wall clock time and date at job start Tue Mar 31 2020 07:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 C 1.50695 * 109.47287 * 120.00725 * 2 1 3 5 5 O 1.21281 * 120.00481 * 122.93949 * 4 2 1 6 6 N 1.34780 * 119.99536 * 302.93647 * 4 2 1 7 7 C 1.47018 * 125.65342 * 4.82972 * 6 4 2 8 8 C 1.54319 * 107.27496 * 181.09599 * 7 6 4 9 9 C 1.55159 * 102.94313 * 22.19634 * 8 7 6 10 10 O 1.42895 * 111.00233 * 82.56870 * 9 8 7 11 11 C 1.50700 * 111.03755 * 206.40929 * 9 8 7 12 12 H 1.07997 * 119.99681 * 22.57085 * 11 9 8 13 13 C 1.37876 * 119.99768 * 202.56731 * 11 9 8 14 14 N 1.31510 * 119.99772 * 178.85287 * 13 11 9 15 15 Si 1.86799 * 120.00033 * 358.84934 * 13 11 9 16 16 H 1.48498 * 109.46918 * 94.55821 * 15 13 11 17 17 H 1.48505 * 109.47294 * 214.55485 * 15 13 11 18 18 H 1.48501 * 109.47269 * 334.55581 * 15 13 11 19 19 C 1.47424 * 125.64368 * 184.87635 * 6 4 2 20 20 C 1.53002 * 109.47005 * 240.00591 * 2 1 3 21 21 C 1.53775 * 113.61343 * 160.40005 * 20 2 1 22 22 C 1.53954 * 87.01977 * 220.04451 * 21 20 2 23 23 C 1.53778 * 87.11192 * 25.36281 * 22 21 20 24 24 H 1.08997 * 109.46653 * 314.87166 * 1 2 3 25 25 H 1.08996 * 109.46979 * 74.87455 * 1 2 3 26 26 H 1.08994 * 109.46818 * 194.87458 * 1 2 3 27 27 H 1.08998 * 109.46638 * 171.60241 * 3 2 1 28 28 H 1.08994 * 109.47123 * 291.60732 * 3 2 1 29 29 H 1.09005 * 109.46747 * 51.60891 * 3 2 1 30 30 H 1.08999 * 109.88226 * 300.51941 * 7 6 4 31 31 H 1.09007 * 109.87934 * 61.52243 * 7 6 4 32 32 H 1.09001 * 110.72211 * 263.83084 * 8 7 6 33 33 H 1.08997 * 110.71976 * 140.55934 * 8 7 6 34 34 H 0.96697 * 113.99930 * 62.39445 * 10 9 8 35 35 H 0.97000 * 120.00086 * 179.97438 * 14 13 11 36 36 H 1.09001 * 110.37388 * 36.99758 * 19 6 4 37 37 H 1.09001 * 110.46299 * 274.71772 * 19 6 4 38 38 H 1.09003 * 112.84848 * 291.59940 * 20 2 1 39 39 H 1.08994 * 113.61902 * 334.56181 * 21 20 2 40 40 H 1.09002 * 113.61324 * 105.47461 * 21 20 2 41 41 H 1.09008 * 113.53982 * 270.81529 * 22 21 20 42 42 H 1.08997 * 113.74509 * 139.94419 * 22 21 20 43 43 H 1.09001 * 113.62273 * 220.09164 * 23 22 21 44 44 H 1.09002 * 113.69083 * 89.19142 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7730 -1.6646 1.1198 6 7 1.6587 -0.2857 2.4536 7 6 0.6927 0.7877 2.7299 8 6 0.6042 0.9411 4.2629 9 6 1.9453 0.3324 4.7511 10 8 3.0038 1.2883 4.6628 11 6 1.8183 -0.2005 6.1550 12 1 0.8471 -0.4658 6.5460 13 6 2.9418 -0.3494 6.9401 14 7 2.8284 -0.7931 8.1729 15 14 4.6251 0.0792 6.2527 16 1 4.9714 1.4743 6.6255 17 1 5.6397 -0.8492 6.8131 18 1 4.6024 -0.0469 4.7733 19 6 2.1516 -0.8198 3.7362 20 6 2.0400 -0.7211 -1.2493 21 6 3.4968 -0.3809 -1.6054 22 6 3.0488 -0.3661 -3.0783 23 6 1.6380 -0.0336 -2.5648 24 1 -0.3632 0.7250 0.7283 25 1 -0.3633 0.2681 -0.9920 26 1 -0.3633 -0.9932 0.2638 27 1 3.1196 1.4461 0.1501 28 1 1.8044 1.9112 -0.9554 29 1 1.5594 1.9978 0.8055 30 1 1.0372 1.7204 2.2832 31 1 -0.2835 0.5212 2.3246 32 1 -0.2414 0.3784 4.6586 33 1 0.5336 1.9924 4.5418 34 1 2.8763 2.0688 5.2193 35 1 3.6189 -0.8982 8.7252 36 1 3.2089 -1.0736 3.6604 37 1 1.5725 -1.6944 4.0326 38 1 1.8325 -1.7911 -1.2348 39 1 3.8202 0.5928 -1.2377 40 1 4.2014 -1.1787 -1.3705 41 1 3.1184 -1.3394 -3.5643 42 1 3.4993 0.4336 -3.6660 43 1 0.8440 -0.5513 -3.1031 44 1 1.4508 1.0350 -2.4594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:32 Heat of formation + Delta-G solvation = -80.189312 kcal Electronic energy + Delta-G solvation = -23950.681750 eV Core-core repulsion = 20674.963182 eV Total energy + Delta-G solvation = -3275.718568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87445 -40.09851 -38.74025 -36.52660 -34.89720 -34.48580 -31.67606 -30.09946 -28.51848 -27.18724 -26.70026 -26.11551 -24.70769 -22.61473 -21.58188 -20.44763 -19.50486 -19.35949 -17.72704 -17.33834 -17.03241 -16.66037 -16.34950 -16.10943 -15.70614 -15.46981 -15.20580 -14.66425 -14.26502 -14.07532 -13.97335 -13.75857 -13.54815 -13.47543 -13.18929 -12.98265 -12.76591 -12.69896 -12.55422 -12.38748 -12.11077 -12.06499 -12.02129 -11.74767 -11.24743 -11.22452 -11.17856 -10.92281 -10.82194 -10.50290 -10.16136 -9.53335 -8.39578 -6.53008 1.37638 1.48751 1.67206 1.73567 2.07994 2.39122 2.94137 3.34305 3.49205 3.68222 3.71687 3.83722 3.93367 4.00233 4.13270 4.18879 4.21261 4.34606 4.43299 4.48482 4.57014 4.69864 4.79837 4.82510 4.85301 4.89020 4.95851 4.96738 5.02510 5.07091 5.13552 5.18659 5.21454 5.24293 5.30038 5.33745 5.37440 5.43832 5.55662 5.67695 6.02738 6.56067 6.67800 6.97940 7.20459 7.27868 8.73318 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.005091 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.495398 B = 5498.582361 C = 5878.237534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.145 4.145 4 C 0.521 3.479 5 O -0.598 6.598 6 N -0.611 5.611 7 C 0.096 3.904 8 C -0.141 4.141 9 C 0.216 3.784 10 O -0.561 6.561 11 C -0.544 4.544 12 H 0.054 0.946 13 C 0.029 3.971 14 N -0.933 5.933 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.341 1.341 18 H -0.264 1.264 19 C 0.118 3.882 20 C -0.091 4.091 21 C -0.148 4.148 22 C -0.134 4.134 23 C -0.118 4.118 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.381 0.619 35 H 0.267 0.733 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 9.053 -21.248 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.202 4.202 4 C 0.311 3.689 5 O -0.479 6.479 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.179 4.179 9 C 0.176 3.824 10 O -0.371 6.371 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.172 4.172 14 N -0.571 5.571 15 Si 0.826 3.174 16 H -0.198 1.198 17 H -0.273 1.273 18 H -0.191 1.191 19 C -0.005 4.005 20 C -0.110 4.110 21 C -0.186 4.186 22 C -0.171 4.171 23 C -0.155 4.155 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.834 8.074 -21.634 23.818 hybrid contribution 1.054 -0.478 1.288 1.731 sum -4.780 7.596 -20.347 22.238 Atomic orbital electron populations 1.22088 0.90740 1.02469 1.04985 1.20701 0.98529 0.96760 0.90288 1.22121 1.00635 0.92692 1.04711 1.21297 0.79735 0.83362 0.84458 1.90625 1.39752 1.30549 1.86967 1.48694 1.43634 1.37186 1.04812 1.22665 0.92725 0.90609 0.96547 1.23196 0.97964 1.02972 0.93772 1.20026 0.85047 0.85914 0.91437 1.86359 1.46860 1.33987 1.69852 1.21491 0.94680 1.44856 0.97161 0.92814 1.25803 1.03458 0.93348 0.94548 1.70055 1.31392 1.46396 1.09246 0.85007 0.77344 0.76714 0.78340 1.19780 1.27349 1.19053 1.22462 0.97814 0.97287 0.82959 1.22364 0.96750 0.98833 0.93086 1.23109 0.96298 1.01304 0.97873 1.22792 0.97129 1.02231 0.94950 1.23001 0.97007 1.01751 0.93749 0.89686 0.88677 0.93759 0.93886 0.88164 0.90520 0.88874 0.88570 0.90601 0.87980 0.76939 0.92426 0.94527 0.92138 0.91387 0.89573 0.94525 0.90506 0.89965 0.90226 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 7.78 71.98 0.56 -2.06 16 2 C -0.06 -1.44 0.41 -52.93 -0.02 -1.46 16 3 C -0.14 -2.84 7.18 71.98 0.52 -2.32 16 4 C 0.52 18.91 6.47 87.65 0.57 19.48 16 5 O -0.60 -27.38 16.07 -3.03 -0.05 -27.43 16 6 N -0.61 -22.16 3.32 -811.79 -2.69 -24.86 16 7 C 0.10 2.55 5.12 86.73 0.44 3.00 16 8 C -0.14 -4.46 6.14 31.78 0.20 -4.26 16 9 C 0.22 9.24 0.70 -10.14 -0.01 9.23 16 10 O -0.56 -23.03 8.26 -148.98 -1.23 -24.27 16 11 C -0.54 -28.84 8.89 25.60 0.23 -28.61 16 12 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 13 C 0.03 1.63 5.47 84.65 0.46 2.09 16 14 N -0.93 -56.77 13.96 21.45 0.30 -56.47 16 15 Si 0.99 49.29 25.15 68.60 1.72 51.01 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.34 -17.82 7.11 99.48 0.71 -17.11 16 18 H -0.26 -13.50 4.98 99.48 0.50 -13.01 16 19 C 0.12 5.34 5.86 86.86 0.51 5.85 16 20 C -0.09 -2.16 2.43 -10.27 -0.03 -2.18 16 21 C -0.15 -3.61 7.14 31.18 0.22 -3.39 16 22 C -0.13 -2.27 8.09 31.18 0.25 -2.02 16 23 C -0.12 -1.77 6.39 31.12 0.20 -1.57 16 24 H 0.08 1.28 4.93 -2.39 -0.01 1.27 16 25 H 0.09 1.19 7.12 -2.39 -0.02 1.17 16 26 H 0.04 0.93 8.05 -2.39 -0.02 0.91 16 27 H 0.04 1.03 6.58 -2.39 -0.02 1.01 16 28 H 0.10 1.32 6.04 -2.39 -0.01 1.30 16 29 H 0.08 1.37 4.99 -2.38 -0.01 1.36 16 30 H 0.09 2.05 5.44 -2.39 -0.01 2.03 16 31 H 0.10 2.03 5.83 -2.38 -0.01 2.01 16 32 H 0.08 2.46 7.98 -2.39 -0.02 2.44 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.38 13.02 8.74 -74.06 -0.65 12.38 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.04 1.89 6.77 -2.39 -0.02 1.87 16 37 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 38 H 0.07 1.93 7.99 -2.39 -0.02 1.91 16 39 H 0.09 2.02 5.72 -2.39 -0.01 2.00 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.10 1.17 6.13 -2.39 -0.01 1.16 16 Total: -1.00 -73.91 321.36 2.31 -71.60 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.15 Total: 18.65 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.10 Total: -8.24 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.39 Total: -81.32 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -1.28 Total: -51.70 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.72 Total: 51.01 kcal Total: -73.91 2.31 -71.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.590 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds