Wall clock time and date at job start Tue Mar 31 2020 07:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.50702 * 109.47347 * 119.99990 * 2 1 3 5 5 O 1.21277 * 120.00401 * 236.16047 * 4 2 1 6 6 N 1.34782 * 119.99723 * 56.15836 * 4 2 1 7 7 C 1.47018 * 125.64815 * 4.10981 * 6 4 2 8 8 C 1.54330 * 107.26742 * 178.84851 * 7 6 4 9 9 C 1.55163 * 103.01991 * 338.13571 * 8 7 6 10 10 O 1.42899 * 111.03477 * 277.22081 * 9 8 7 11 11 C 1.50698 * 111.00528 * 153.38294 * 9 8 7 12 12 H 1.08001 * 119.99520 * 247.80460 * 11 9 8 13 13 C 1.37874 * 120.00209 * 67.80115 * 11 9 8 14 14 N 1.31517 * 119.99805 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00075 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46925 * 60.00708 * 15 13 11 17 17 H 1.48498 * 109.47094 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47540 * 300.00780 * 15 13 11 19 19 C 1.47425 * 125.64844 * 184.41101 * 6 4 2 20 20 C 1.53002 * 109.47147 * 240.00212 * 2 1 3 21 21 C 1.53784 * 113.61359 * 153.46136 * 20 2 1 22 22 C 1.53787 * 87.07951 * 220.01898 * 21 20 2 23 23 C 1.53774 * 113.61440 * 55.96421 * 20 2 1 24 24 H 1.08994 * 109.47646 * 42.71210 * 1 2 3 25 25 H 1.09006 * 109.47323 * 282.71277 * 1 2 3 26 26 H 1.09005 * 109.47214 * 162.71618 * 1 2 3 27 27 H 1.09002 * 109.46860 * 52.80347 * 3 2 1 28 28 H 1.09001 * 109.47628 * 172.79921 * 3 2 1 29 29 H 1.08999 * 109.47555 * 292.80291 * 3 2 1 30 30 H 1.09003 * 109.88098 * 298.39214 * 7 6 4 31 31 H 1.08997 * 109.88716 * 59.55436 * 7 6 4 32 32 H 1.09000 * 110.85304 * 219.67422 * 8 7 6 33 33 H 1.08998 * 110.67238 * 96.51642 * 8 7 6 34 34 H 0.96702 * 114.00238 * 292.20974 * 10 9 8 35 35 H 0.97002 * 119.99802 * 179.97438 * 14 13 11 36 36 H 1.09005 * 110.36227 * 322.93248 * 19 6 4 37 37 H 1.08999 * 110.36282 * 85.25157 * 19 6 4 38 38 H 1.09001 * 112.84935 * 284.76743 * 20 2 1 39 39 H 1.08998 * 113.61218 * 334.56566 * 21 20 2 40 40 H 1.09003 * 113.61263 * 105.47180 * 21 20 2 41 41 H 1.09002 * 113.61408 * 270.88474 * 22 21 20 42 42 H 1.08993 * 113.61101 * 139.98068 * 22 21 20 43 43 H 1.09006 * 113.61829 * 254.53422 * 23 20 2 44 44 H 1.09009 * 113.61400 * 25.43209 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7859 -0.1433 1.9929 6 7 1.6441 -1.9760 1.4836 7 6 0.8075 -2.8074 0.6059 8 6 0.6502 -4.1817 1.2902 9 6 1.8674 -4.2351 2.2510 10 8 3.0458 -4.6591 1.5628 11 6 1.5846 -5.1274 3.4321 12 1 1.4906 -4.7016 4.4201 13 6 1.4458 -6.4872 3.2512 14 7 1.5607 -7.0056 2.0480 15 14 1.0959 -7.5932 4.7153 16 1 -0.1822 -7.1836 5.3508 17 1 0.9925 -9.0022 4.2578 18 1 2.1998 -7.4732 5.7015 19 6 1.9829 -2.7538 2.6893 20 6 2.0400 -0.7212 -1.2493 21 6 3.4338 -0.2563 -1.7031 22 6 2.9086 -0.3489 -3.1455 23 6 1.5018 -0.1318 -2.5637 24 1 -0.3634 0.7550 -0.6970 25 1 -0.3634 0.2262 1.0025 26 1 -0.3634 -0.9813 -0.3053 27 1 1.5753 1.9921 0.8186 28 1 3.1223 1.4453 0.1288 29 1 1.7856 1.9179 -0.9473 30 1 -0.1695 -2.3421 0.4754 31 1 1.2937 -2.9308 -0.3618 32 1 0.7011 -4.9878 0.5583 33 1 -0.2845 -4.2285 1.8490 34 1 3.0199 -5.5801 1.2691 35 1 1.4635 -7.9623 1.9208 36 1 3.0005 -2.5315 3.0106 37 1 1.2757 -2.5389 3.4904 38 1 1.9397 -1.8046 -1.1832 39 1 3.6781 0.7593 -1.3918 40 1 4.2264 -0.9706 -1.4803 41 1 3.0471 -1.3306 -3.5985 42 1 3.2465 0.4655 -3.7863 43 1 0.7345 -0.7456 -3.0357 44 1 1.2179 0.9179 -2.4876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:41 Heat of formation + Delta-G solvation = -65.226160 kcal Electronic energy + Delta-G solvation = -23962.170320 eV Core-core repulsion = 20687.100603 eV Total energy + Delta-G solvation = -3275.069717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -40.59470 -38.47366 -37.12276 -34.39048 -33.60851 -32.14541 -29.76937 -28.49928 -27.34007 -25.89507 -25.23961 -24.94944 -23.13392 -21.35033 -19.67361 -18.97402 -18.38030 -17.20574 -16.62986 -15.54019 -15.31231 -15.11207 -14.95350 -14.48176 -14.23695 -13.70297 -13.43748 -12.96647 -12.84868 -12.56898 -12.50671 -12.13675 -11.91401 -11.74541 -11.66089 -11.59615 -11.46694 -11.30568 -11.11334 -11.05106 -10.85075 -10.54523 -10.50890 -10.28861 -10.14266 -10.04228 -9.93969 -9.41964 -9.05087 -8.68021 -8.20842 -7.89721 -6.31070 -4.38737 3.15163 3.20375 3.25423 3.28606 3.62167 4.25121 4.57937 4.60830 4.70407 4.87111 4.94436 4.98110 5.18184 5.30979 5.34500 5.54474 5.58108 5.62528 5.70948 5.74630 5.81504 5.83916 5.87919 5.89278 5.98449 6.05132 6.09161 6.14776 6.25290 6.28383 6.36622 6.40336 6.46761 6.61583 6.69859 6.89402 7.01161 7.29704 7.32082 7.72370 7.99021 8.21970 8.62595 8.73933 9.30325 9.47635 10.76582 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.004795 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.905717 B = 5837.698280 C = 6143.964118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.127 4.127 4 C 0.534 3.466 5 O -0.556 6.556 6 N -0.603 5.603 7 C 0.092 3.908 8 C -0.141 4.141 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.536 4.536 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.109 4.109 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.132 4.132 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.385 0.615 35 H 0.270 0.730 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 10.424 -9.508 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.184 4.184 4 C 0.322 3.678 5 O -0.435 6.435 6 N -0.335 5.335 7 C -0.031 4.031 8 C -0.180 4.180 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.574 4.574 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.004 4.004 20 C -0.128 4.128 21 C -0.180 4.180 22 C -0.179 4.179 23 C -0.169 4.169 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.691 11.232 -9.095 14.701 hybrid contribution -0.491 -1.404 0.641 1.620 sum -3.183 9.827 -8.454 13.348 Atomic orbital electron populations 1.21995 0.93030 1.02985 1.02185 1.20617 0.96780 0.96340 0.93279 1.21764 1.02172 0.93374 1.01119 1.20107 0.80476 0.80508 0.86742 1.90631 1.36517 1.66113 1.50249 1.48515 1.50703 1.12287 1.21992 1.22524 0.93428 0.93081 0.94048 1.23223 1.01458 0.93110 1.00171 1.19553 0.81924 0.88323 0.89266 1.86106 1.41007 1.34541 1.77737 1.21461 1.49560 0.92137 0.94254 0.91742 1.24981 0.93667 0.98001 0.96297 1.69555 1.50047 1.13231 1.20999 0.86461 0.79035 0.79088 0.82316 1.20040 1.21093 1.19980 1.22370 1.00505 0.91286 0.86224 1.22850 0.96762 1.00890 0.92251 1.23123 0.96765 1.02371 0.95764 1.22785 0.96806 1.01741 0.96547 1.22943 0.96794 1.01156 0.95998 0.91850 0.92470 0.91048 0.92492 0.91407 0.92241 0.92132 0.91984 0.89977 0.91466 0.76331 0.92029 0.91187 0.91320 0.87777 0.89285 0.91560 0.90318 0.91742 0.91534 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.40 37.15 0.28 -1.49 16 2 C -0.07 -0.95 0.45 -155.66 -0.07 -1.02 16 3 C -0.13 -1.65 6.53 37.16 0.24 -1.41 16 4 C 0.53 10.23 6.50 -10.98 -0.07 10.16 16 5 O -0.56 -12.53 16.08 5.56 0.09 -12.44 16 6 N -0.60 -11.99 3.31 -170.52 -0.56 -12.55 16 7 C 0.09 1.63 5.39 -3.06 -0.02 1.61 16 8 C -0.14 -2.98 5.64 -24.89 -0.14 -3.12 16 9 C 0.25 6.03 0.89 -89.62 -0.08 5.95 16 10 O -0.58 -15.02 13.18 -35.23 -0.46 -15.49 16 11 C -0.54 -13.89 8.25 -34.44 -0.28 -14.17 16 12 H 0.06 1.66 7.77 -52.49 -0.41 1.25 16 13 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 14 N -0.90 -22.96 10.79 55.43 0.60 -22.36 16 15 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.12 2.67 6.10 -2.53 -0.02 2.66 16 20 C -0.11 -1.43 2.78 -89.81 -0.25 -1.68 16 21 C -0.14 -1.81 7.28 -25.91 -0.19 -2.00 16 22 C -0.14 -1.46 8.08 -25.92 -0.21 -1.67 16 23 C -0.13 -1.34 6.68 -25.92 -0.17 -1.52 16 24 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 25 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 26 H 0.07 0.85 5.13 -51.93 -0.27 0.59 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16 29 H 0.06 0.61 6.47 -51.93 -0.34 0.28 16 30 H 0.06 0.93 5.47 -51.93 -0.28 0.64 16 31 H 0.06 1.06 5.43 -51.93 -0.28 0.78 16 32 H 0.08 1.81 7.85 -51.93 -0.41 1.41 16 33 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.38 9.97 6.93 45.56 0.32 10.28 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.07 1.71 8.00 -51.93 -0.42 1.30 16 37 H 0.07 1.51 8.01 -51.93 -0.42 1.09 16 38 H 0.10 1.53 4.83 -51.93 -0.25 1.28 16 39 H 0.09 1.08 5.57 -51.93 -0.29 0.79 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.76 6.56 -51.92 -0.34 0.42 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -28.23 328.73 -7.68 -35.91 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.20 Total: 12.89 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.08 Total: -5.94 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.03 Total: -34.92 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.38 Total: -27.93 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.23 -7.68 -35.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.320 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.88 seconds