Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47304 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99761 * 179.97438 * 11 10 9 14 14 C 1.46922 * 120.63450 * 359.72234 * 13 11 10 15 15 C 1.52759 * 109.00888 * 233.58447 * 14 13 11 16 16 C 1.53044 * 109.38122 * 305.58281 * 15 14 13 17 17 C 1.53043 * 109.53628 * 61.24123 * 16 15 14 18 18 H 1.09005 * 109.49595 * 58.58704 * 17 16 15 19 19 O 1.42896 * 109.49940 * 178.68112 * 17 16 15 20 20 C 1.42897 * 114.00491 * 209.84127 * 19 17 16 21 21 C 1.53783 * 113.61196 * 247.49910 * 20 19 17 22 22 C 1.53782 * 87.07810 * 220.01229 * 21 20 19 23 23 C 1.53780 * 113.61789 * 149.99773 * 20 19 17 24 24 C 1.46931 * 120.62904 * 179.97438 * 13 11 10 25 25 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 27 27 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 28 28 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 29 29 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 30 30 H 1.08997 * 109.58337 * 353.41690 * 14 13 11 31 31 H 1.09000 * 109.58847 * 113.83797 * 14 13 11 32 32 H 1.09005 * 109.56484 * 185.55230 * 15 14 13 33 33 H 1.09000 * 109.36279 * 65.49552 * 15 14 13 34 34 H 1.08989 * 109.46163 * 301.22127 * 16 15 14 35 35 H 1.09002 * 109.44911 * 181.25481 * 16 15 14 36 36 H 1.09002 * 112.84667 * 18.80185 * 20 19 17 37 37 H 1.08993 * 113.61749 * 334.56259 * 21 20 19 38 38 H 1.09003 * 113.61314 * 105.47101 * 21 20 19 39 39 H 1.09000 * 113.61818 * 270.88314 * 22 21 20 40 40 H 1.09000 * 113.61447 * 139.97903 * 22 21 20 41 41 H 1.08994 * 113.61537 * 254.53071 * 23 20 19 42 42 H 1.08998 * 113.61524 * 25.43642 * 23 20 19 43 43 H 1.08999 * 109.58857 * 246.15624 * 24 13 11 44 44 H 1.09003 * 109.58307 * 6.44283 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4919 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0003 13 7 2.1658 -6.1343 0.0016 14 6 3.6349 -6.1505 -0.0035 15 6 4.1190 -7.0160 -1.1654 16 6 3.4752 -8.4011 -1.0695 17 6 1.9538 -8.2662 -1.1665 18 1 1.6905 -7.7858 -2.1089 19 8 1.3552 -9.5624 -1.1077 20 6 0.1227 -9.6666 -1.8232 21 6 -1.1003 -9.8800 -0.9157 22 6 -1.6150 -10.8691 -1.9748 23 6 -0.1469 -11.0727 -2.3846 24 6 1.4452 -7.4148 0.0016 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8896 28 1 2.8727 -3.6047 -0.8877 29 1 2.8713 -3.6038 0.8923 30 1 4.0110 -5.1347 -0.1249 31 1 3.9990 -6.5673 0.9356 32 1 5.2035 -7.1150 -1.1197 33 1 3.8353 -6.5474 -2.1077 34 1 3.7390 -8.8590 -0.1163 35 1 3.8370 -9.0268 -1.8854 36 1 -0.0095 -8.8710 -2.5565 37 1 -0.8595 -10.3483 0.0386 38 1 -1.7239 -8.9926 -0.8075 39 1 -2.2238 -10.4022 -2.7490 40 1 -2.0777 -11.7606 -1.5513 41 1 -0.0007 -11.1481 -3.4621 42 1 0.3546 -11.8670 -1.8318 43 1 1.6275 -7.9367 0.9410 44 1 0.3767 -7.2327 -0.1141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594388889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = -82.408626 kcal Electronic energy + Delta-G solvation = -22465.715461 eV Core-core repulsion = 19189.900656 eV Total energy + Delta-G solvation = -3275.814805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23371 -39.25489 -37.46321 -35.62203 -33.83561 -32.45319 -31.21691 -29.88486 -26.13335 -25.84834 -25.03391 -24.51454 -22.94052 -21.92780 -20.78761 -19.81162 -18.60746 -17.42166 -17.06384 -16.27278 -15.91884 -15.67228 -15.31934 -14.97700 -14.59783 -13.98173 -13.88587 -13.68454 -13.38733 -13.20344 -12.88055 -12.67432 -12.47438 -12.21087 -12.16030 -11.71065 -11.60235 -11.44909 -11.24500 -11.11756 -10.88857 -10.82139 -10.70330 -10.52340 -10.13109 -10.12165 -9.88649 -9.73308 -9.26718 -8.53549 -8.46859 -8.28456 -6.32085 -4.02277 3.01749 3.11553 3.44783 3.47301 3.56818 3.66194 4.34463 4.36656 4.55797 4.59179 4.61239 4.65503 4.70329 4.78169 4.92907 5.02693 5.12507 5.22022 5.33345 5.44960 5.45601 5.48062 5.52804 5.60454 5.65509 5.66079 5.70693 5.74881 5.80774 5.91708 5.97383 5.99318 6.07111 6.08253 6.11627 6.58045 6.74238 7.13101 7.51309 7.56487 7.64069 8.19028 8.49086 8.61733 8.91725 9.71490 11.08834 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.003378 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.477190 B = 8286.199995 C = 9106.879982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.609 4.609 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.537 6.537 13 N -0.621 5.621 14 C 0.105 3.895 15 C -0.133 4.133 16 C -0.115 4.115 17 C 0.077 3.923 18 H 0.064 0.936 19 O -0.365 6.365 20 C 0.061 3.939 21 C -0.158 4.158 22 C -0.142 4.142 23 C -0.137 4.137 24 C 0.092 3.908 25 H 0.272 0.728 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -22.374 -3.700 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.647 4.647 8 H 0.067 0.933 9 C -0.013 4.013 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.413 6.413 13 N -0.358 5.358 14 C -0.018 4.018 15 C -0.172 4.172 16 C -0.152 4.152 17 C 0.018 3.982 18 H 0.082 0.918 19 O -0.283 6.283 20 C 0.003 3.997 21 C -0.196 4.196 22 C -0.180 4.180 23 C -0.174 4.174 24 C -0.031 4.031 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.446 -20.871 -3.596 21.868 hybrid contribution 0.192 -1.603 -0.112 1.618 sum 5.638 -22.474 -3.708 23.465 Atomic orbital electron populations 1.70736 1.06919 1.30988 1.45988 1.25853 0.96574 1.02690 0.93825 0.83540 0.74857 0.75370 0.76415 1.21474 1.21454 1.20763 1.22021 0.94139 0.91991 1.56532 0.93268 1.19024 0.93837 0.91177 0.97284 1.21742 1.00424 0.91342 1.02543 1.21609 0.88397 0.85513 0.74169 1.90646 1.14460 1.87207 1.48942 1.48227 1.06585 1.05539 1.75493 1.21675 0.79886 1.01904 0.98344 1.21857 1.00706 0.95068 0.99547 1.21585 0.93021 0.97407 1.03232 1.22544 0.93676 0.83755 0.98176 0.91818 1.87931 1.36841 1.30251 1.73264 1.23871 0.83820 0.97834 0.94203 1.23498 0.97215 1.00049 0.98837 1.22658 0.96099 1.00006 0.99204 1.23216 0.96178 0.97080 1.00971 1.21957 0.98644 0.84093 0.98410 0.91739 0.96748 0.96793 0.90069 0.90022 0.88739 0.91446 0.89911 0.91196 0.90934 0.91106 0.89510 0.89237 0.91008 0.89973 0.90802 0.91165 0.89247 0.91352 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.94 13.65 55.43 0.76 -28.18 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.61 -17.55 9.11 -34.44 -0.31 -17.87 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 10 C -0.12 -2.50 3.99 -27.88 -0.11 -2.61 16 11 C 0.51 10.20 7.70 -10.99 -0.08 10.12 16 12 O -0.54 -12.83 15.39 5.55 0.09 -12.74 16 13 N -0.62 -9.43 2.98 -173.01 -0.52 -9.95 16 14 C 0.11 1.19 6.31 -3.94 -0.02 1.17 16 15 C -0.13 -1.24 6.06 -26.83 -0.16 -1.40 16 16 C -0.11 -1.11 5.54 -26.69 -0.15 -1.25 16 17 C 0.08 0.91 2.75 -26.59 -0.07 0.83 16 18 H 0.06 0.79 7.43 -51.93 -0.39 0.40 16 19 O -0.37 -4.29 10.00 -35.23 -0.35 -4.64 16 20 C 0.06 0.63 4.27 -25.92 -0.11 0.52 16 21 C -0.16 -1.57 7.91 -25.92 -0.21 -1.77 16 22 C -0.14 -1.14 8.08 -25.92 -0.21 -1.35 16 23 C -0.14 -1.16 7.91 -25.92 -0.21 -1.36 16 24 C 0.09 1.29 6.06 -3.69 -0.02 1.27 16 25 H 0.27 8.78 7.22 -40.82 -0.29 8.49 16 26 H 0.01 0.42 7.97 -51.93 -0.41 0.00 16 27 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 28 H 0.08 1.54 7.68 -51.93 -0.40 1.14 16 29 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 30 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.91 7.46 -51.93 -0.39 0.52 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -34.17 350.03 -9.36 -43.52 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.65 Total: -0.85 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.87 Total: -12.82 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.24 Total: -38.13 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.27 Total: -17.39 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.17 -9.36 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594388889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.888 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds