Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48496 * 109.47338 * 240.00040 * 3 2 1 5 5 H 1.48494 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46893 * 120.00084 * 3 2 1 7 7 C 1.37878 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47666 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99513 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00303 * 180.02562 * 11 10 9 14 14 C 1.46917 * 120.63114 * 0.02562 * 13 11 10 15 15 C 1.53190 * 108.77597 * 126.37360 * 14 13 11 16 16 C 1.53040 * 109.31141 * 54.63573 * 15 14 13 17 17 C 1.53040 * 109.54203 * 298.63428 * 16 15 14 18 18 H 1.08999 * 109.52533 * 301.40347 * 17 16 15 19 19 O 1.42891 * 109.50146 * 181.31596 * 17 16 15 20 20 C 1.42905 * 113.99873 * 150.16196 * 19 17 16 21 21 C 1.53786 * 113.61467 * 110.86351 * 20 19 17 22 22 C 1.53962 * 87.01719 * 89.22967 * 21 20 19 23 23 C 1.53781 * 113.61505 * 208.47211 * 20 19 17 24 24 C 1.46929 * 120.63001 * 180.02562 * 13 11 10 25 25 H 0.96998 * 120.00391 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47376 * 60.00212 * 9 7 2 27 27 H 1.09004 * 109.47409 * 300.00168 * 9 7 2 28 28 H 1.09004 * 109.47015 * 60.00053 * 10 9 7 29 29 H 1.08997 * 109.47059 * 300.00011 * 10 9 7 30 30 H 1.09002 * 109.58749 * 246.15902 * 14 13 11 31 31 H 1.08997 * 109.58875 * 6.44656 * 14 13 11 32 32 H 1.08999 * 109.50434 * 174.58562 * 15 14 13 33 33 H 1.08998 * 109.49748 * 294.65497 * 15 14 13 34 34 H 1.09002 * 109.46103 * 178.61885 * 16 15 14 35 35 H 1.08995 * 109.46228 * 58.65975 * 16 15 14 36 36 H 1.09002 * 112.84917 * 339.66862 * 20 19 17 37 37 H 1.08993 * 113.61491 * 203.75088 * 21 20 19 38 38 H 1.09000 * 113.61138 * 334.65426 * 21 20 19 39 39 H 1.08997 * 113.53543 * 270.80998 * 22 21 20 40 40 H 1.08998 * 113.73879 * 139.94595 * 22 21 20 41 41 H 1.09001 * 113.61695 * 25.34840 * 23 20 19 42 42 H 1.08997 * 113.61223 * 156.25423 * 23 20 19 43 43 H 1.09002 * 109.58600 * 113.83702 * 24 13 11 44 44 H 1.09001 * 109.58676 * 353.41190 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4920 -4.9672 -0.0025 12 8 0.2791 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0031 14 6 3.6350 -6.1504 -0.0026 15 6 4.1182 -7.0168 1.1647 16 6 3.4745 -8.4018 1.0674 17 6 1.9531 -8.2671 1.1634 18 1 1.6885 -7.7876 2.1058 19 8 1.3547 -9.5632 1.1033 20 6 0.1215 -9.6678 1.8179 21 6 -1.1055 -9.8407 0.9071 22 6 -0.8623 -11.3580 1.0027 23 6 -0.1662 -11.0831 2.3461 24 6 1.4454 -7.4148 -0.0043 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8727 -3.6046 0.8877 29 1 2.8713 -3.6038 -0.8922 30 1 3.9962 -6.5688 -0.9421 31 1 4.0116 -5.1342 0.1136 32 1 5.2028 -7.1158 1.1199 33 1 3.8343 -6.5485 2.1072 34 1 3.8356 -9.0282 1.8831 35 1 3.7391 -8.8591 0.1141 36 1 0.0007 -8.8881 2.5699 37 1 -2.0396 -9.5184 1.3671 38 1 -0.9651 -9.4374 -0.0958 39 1 -0.1914 -11.7405 0.2335 40 1 -1.7766 -11.9439 1.0964 41 1 0.7313 -11.6814 2.5033 42 1 -0.8431 -11.1011 3.2002 43 1 1.6282 -7.9361 -0.9440 44 1 0.3771 -7.2330 0.1133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594388890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = -75.511111 kcal Electronic energy + Delta-G solvation = -22472.922114 eV Core-core repulsion = 19197.406408 eV Total energy + Delta-G solvation = -3275.515706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.20778 -39.24075 -37.33676 -35.42978 -33.50630 -32.36746 -31.24318 -29.88682 -26.29795 -25.83807 -25.15257 -24.75063 -23.05800 -21.74212 -20.52941 -19.80018 -18.44071 -17.22020 -16.71212 -16.05309 -15.91429 -15.48906 -15.17545 -14.88302 -14.56734 -14.42015 -14.18110 -13.72305 -13.24608 -13.02440 -12.95601 -12.67938 -12.57045 -12.16898 -12.06934 -11.63564 -11.37744 -11.22021 -11.12377 -10.99658 -10.92008 -10.79378 -10.61614 -10.54605 -10.37291 -9.96082 -9.74487 -9.61174 -9.18824 -9.00317 -8.40977 -8.30786 -5.96067 -4.00706 3.04003 3.20656 3.34111 3.38860 3.40386 3.51470 4.42496 4.43286 4.46751 4.63759 4.68011 4.73084 4.77369 4.85091 4.97615 5.06966 5.20910 5.30430 5.38695 5.38717 5.46601 5.52913 5.55325 5.69820 5.69915 5.70808 5.76476 5.82873 5.86681 5.99697 6.03509 6.04135 6.14158 6.19605 6.21055 6.66182 6.88940 7.14679 7.72851 7.74178 7.85864 8.06991 8.38052 8.72458 9.07527 9.62757 11.14871 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.003340 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.778371 B = 8380.376164 C = 9126.743482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.533 6.533 13 N -0.623 5.623 14 C 0.105 3.895 15 C -0.133 4.133 16 C -0.114 4.114 17 C 0.078 3.922 18 H 0.065 0.935 19 O -0.357 6.357 20 C 0.062 3.938 21 C -0.163 4.163 22 C -0.134 4.134 23 C -0.142 4.142 24 C 0.092 3.908 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -22.039 3.444 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.409 6.409 13 N -0.360 5.360 14 C -0.018 4.018 15 C -0.171 4.171 16 C -0.152 4.152 17 C 0.019 3.981 18 H 0.084 0.916 19 O -0.275 6.275 20 C 0.004 3.996 21 C -0.200 4.200 22 C -0.172 4.172 23 C -0.179 4.179 24 C -0.031 4.031 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.257 -22.059 3.340 22.922 hybrid contribution 0.381 1.055 0.103 1.127 sum 5.638 -21.004 3.443 22.018 Atomic orbital electron populations 1.69985 1.06064 1.26707 1.50076 1.25024 0.94823 0.99215 0.95293 0.86652 0.79549 0.83181 0.78542 1.20234 1.21285 1.20251 1.21176 0.92872 0.91006 1.51548 0.92656 1.18901 0.93171 0.89359 0.98595 1.21886 1.00731 0.91832 1.02304 1.21634 0.88438 0.85440 0.74170 1.90659 1.14424 1.87126 1.48645 1.48251 1.06526 1.05527 1.75714 1.21750 0.79978 1.01892 0.98161 1.21924 1.00624 0.94995 0.99590 1.21578 0.92931 0.97489 1.03197 1.22583 0.93607 0.83447 0.98414 0.91646 1.87849 1.35876 1.30458 1.73273 1.23165 0.84677 0.97815 0.93959 1.23485 0.98249 0.96903 1.01410 1.22808 1.00402 0.96369 0.97589 1.23153 1.00945 0.96075 0.97745 1.21952 0.98736 0.84196 0.98241 0.92882 0.95838 0.95879 0.90228 0.90208 0.91532 0.88667 0.90004 0.91133 0.91149 0.90958 0.90951 0.89364 0.90621 0.89923 0.91675 0.90728 0.89177 0.91435 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.13 -2.62 3.98 -27.88 -0.11 -2.73 16 11 C 0.51 10.19 7.70 -10.99 -0.08 10.10 16 12 O -0.53 -12.83 15.40 5.55 0.09 -12.75 16 13 N -0.62 -9.43 2.97 -172.75 -0.51 -9.94 16 14 C 0.11 1.19 6.34 -3.72 -0.02 1.16 16 15 C -0.13 -1.22 6.08 -26.61 -0.16 -1.39 16 16 C -0.11 -1.10 5.53 -26.69 -0.15 -1.25 16 17 C 0.08 0.92 2.76 -26.60 -0.07 0.84 16 18 H 0.07 0.81 7.43 -51.93 -0.39 0.43 16 19 O -0.36 -4.20 9.92 -35.23 -0.35 -4.55 16 20 C 0.06 0.65 4.32 -25.92 -0.11 0.54 16 21 C -0.16 -1.65 7.93 -25.82 -0.20 -1.85 16 22 C -0.13 -1.18 8.02 -25.82 -0.21 -1.39 16 23 C -0.14 -1.22 7.91 -25.92 -0.21 -1.42 16 24 C 0.09 1.29 6.05 -3.69 -0.02 1.26 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.48 7.69 -51.93 -0.40 1.08 16 29 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.06 5.93 -51.93 -0.31 0.75 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.77 7.47 -51.93 -0.39 0.38 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.48 7.00 -51.93 -0.36 1.11 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -33.48 351.31 -9.36 -42.84 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.71 Total: -1.85 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.88 Total: -8.90 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.22 Total: -36.72 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.26 Total: -17.30 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.48 -9.36 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594388890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.667 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds