Wall clock time and date at job start Tue Mar 31 2020 07:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00276 * 2 1 4 4 C 1.53003 * 109.47211 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47352 * 300.00749 * 3 2 1 6 6 O 1.21288 * 119.99921 * 132.62535 * 5 3 2 7 7 N 1.34773 * 120.00333 * 312.89574 * 5 3 2 8 8 C 1.46919 * 120.63618 * 183.40869 * 7 5 3 9 9 C 1.53184 * 108.77650 * 126.37150 * 8 7 5 10 10 C 1.53037 * 109.31643 * 54.63728 * 9 8 7 11 11 C 1.53041 * 109.53825 * 298.63608 * 10 9 8 12 12 H 1.08998 * 109.49828 * 301.37899 * 11 10 9 13 13 C 1.50701 * 109.50078 * 181.31092 * 11 10 9 14 14 H 1.07998 * 120.00155 * 240.00241 * 13 11 10 15 15 C 1.37878 * 119.99432 * 60.00154 * 13 11 10 16 16 N 1.31507 * 120.00423 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99694 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47021 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46976 * 119.99664 * 17 15 13 20 20 H 1.48499 * 109.47344 * 239.99951 * 17 15 13 21 21 C 1.46931 * 120.62589 * 3.13478 * 7 5 3 22 22 C 1.52999 * 109.46871 * 60.00868 * 3 2 1 23 23 C 1.52996 * 117.50526 * 133.62247 * 22 3 2 24 24 C 1.52997 * 60.00192 * 252.50935 * 23 22 3 25 25 H 1.09002 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46671 * 299.99389 * 1 2 3 27 27 H 1.08993 * 109.47508 * 59.98953 * 1 2 3 28 28 H 1.08999 * 109.46998 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47345 * 300.00410 * 4 3 2 30 30 H 1.09006 * 109.46680 * 60.00754 * 4 3 2 31 31 H 1.09003 * 109.58749 * 246.15784 * 8 7 5 32 32 H 1.09000 * 109.58476 * 6.58454 * 8 7 5 33 33 H 1.09003 * 109.49729 * 174.58696 * 9 8 7 34 34 H 1.09001 * 109.49774 * 294.65136 * 9 8 7 35 35 H 1.09005 * 109.46182 * 58.65275 * 10 9 8 36 36 H 1.09002 * 109.46667 * 178.61364 * 10 9 8 37 37 H 0.97002 * 120.00389 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.58569 * 353.41014 * 21 7 5 39 39 H 1.08997 * 109.59106 * 113.84304 * 21 7 5 40 40 H 1.09001 * 115.54903 * 279.32846 * 22 3 2 41 41 H 1.09001 * 117.49384 * 359.97438 * 23 22 3 42 42 H 1.08990 * 117.50700 * 145.01810 * 23 22 3 43 43 H 1.09000 * 117.49766 * 252.50592 * 24 23 22 44 44 H 1.09002 * 117.50557 * 107.48365 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 1.5655 2.0534 -1.2303 6 8 1.1563 3.1910 -1.1335 7 7 1.6174 1.4564 -2.4375 8 6 1.2581 2.1964 -3.6548 9 6 2.4110 2.0859 -4.6573 10 6 2.7373 0.6094 -4.8928 11 6 3.1790 -0.0335 -3.5761 12 1 4.0505 0.4938 -3.1882 13 6 3.5309 -1.4792 -3.8153 14 1 2.9950 -2.2587 -3.2943 15 6 4.5371 -1.8065 -4.6993 16 7 5.1900 -0.8572 -5.3333 17 14 4.9739 -3.5984 -4.9953 18 1 4.0984 -4.4649 -4.1657 19 1 4.7766 -3.9254 -6.4303 20 1 6.3935 -3.8295 -4.6256 21 6 2.0400 0.0547 -2.5618 22 6 1.5590 2.0646 1.2494 23 6 2.6294 2.8120 2.0471 24 6 2.0164 1.5267 2.6067 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 3.9789 2.1803 -0.0002 29 1 3.8575 0.6434 0.8890 30 1 3.8567 0.6439 -0.8910 31 1 0.3542 1.7690 -4.0889 32 1 1.0873 3.2443 -3.4083 33 1 2.1190 2.5488 -5.6000 34 1 3.2893 2.5941 -4.2592 35 1 1.8513 0.0970 -5.2678 36 1 3.5410 0.5272 -5.6246 37 1 5.8982 -1.0874 -5.9549 38 1 2.3852 -0.3101 -1.5943 39 1 1.2013 -0.5510 -2.9049 40 1 0.5671 2.5132 1.1942 41 1 3.6552 2.7625 1.6821 42 1 2.3420 3.7526 2.5168 43 1 1.3257 1.6217 3.4445 44 1 2.6389 0.6318 2.6096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:22 Heat of formation + Delta-G solvation = -51.901305 kcal Electronic energy + Delta-G solvation = -24246.061023 eV Core-core repulsion = 20971.569115 eV Total energy + Delta-G solvation = -3274.491908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.65503 -38.11605 -36.73036 -36.09492 -33.29012 -31.87871 -30.66033 -29.92467 -26.31841 -25.61992 -25.05638 -24.10616 -22.35864 -21.92456 -20.65979 -19.33011 -18.23731 -17.27084 -16.64701 -16.06046 -15.73642 -15.40940 -14.77659 -14.58350 -14.15419 -13.94280 -13.51873 -13.26397 -12.91379 -12.77205 -12.69709 -12.55170 -12.01743 -11.87012 -11.68749 -11.66821 -11.21480 -11.01060 -10.92713 -10.84153 -10.72367 -10.40177 -10.25523 -10.21782 -10.01321 -9.89546 -9.75012 -9.52476 -8.88935 -8.68013 -8.39932 -7.88815 -6.03610 -4.11101 2.88122 3.26933 3.35473 3.38154 3.41832 3.71683 4.07158 4.39546 4.65906 4.72118 4.96431 5.06036 5.20284 5.26247 5.40334 5.51707 5.59069 5.61048 5.67348 5.76694 5.79518 5.85057 5.88565 5.92665 5.96508 6.10666 6.14946 6.18846 6.34186 6.38871 6.43118 6.56482 6.71029 6.84872 6.96796 7.16151 7.19870 7.37579 7.68279 7.89416 7.96089 8.09694 8.35801 8.58568 8.93206 9.54263 11.01682 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019952 B = 0.005820 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.000952 B = 4809.772435 C = 5439.246093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.137 3.863 4 C -0.151 4.151 5 C 0.494 3.506 6 O -0.557 6.557 7 N -0.590 5.590 8 C 0.111 3.889 9 C -0.133 4.133 10 C -0.113 4.113 11 C 0.038 3.962 12 H 0.028 0.972 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.098 3.902 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.167 4.167 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.095 0.905 37 H 0.260 0.740 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 3.960 10.367 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.275 6.275 3 C 0.095 3.905 4 C -0.208 4.208 5 C 0.281 3.719 6 O -0.437 6.437 7 N -0.321 5.321 8 C -0.012 4.012 9 C -0.171 4.171 10 C -0.151 4.151 11 C 0.019 3.981 12 H 0.046 0.954 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.023 4.023 22 C -0.182 4.182 23 C -0.207 4.207 24 C -0.204 4.204 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.384 4.388 10.267 12.862 hybrid contribution 0.007 -0.748 -0.453 0.874 sum -6.377 3.640 9.814 12.257 Atomic orbital electron populations 1.22763 0.81272 1.02773 1.00182 1.88043 1.19794 1.25395 1.94250 1.21083 0.95721 0.82979 0.90733 1.22074 0.90422 1.03304 1.04962 1.21027 0.78489 0.87011 0.85374 1.90620 1.47777 1.18896 1.86357 1.48363 1.64076 1.14299 1.05396 1.21605 0.97629 0.96770 0.85152 1.21985 0.97295 1.00694 0.97128 1.21640 1.00961 0.90388 1.02129 1.18935 0.92099 0.96364 0.90722 0.95357 1.21098 1.17866 0.91489 1.24632 0.92358 1.24934 0.95955 0.97148 0.95732 1.69883 1.23152 1.31626 1.28019 0.86559 0.78276 0.85354 0.77950 1.19701 1.21110 1.21051 1.22497 0.98633 0.77987 1.03182 1.22462 1.00441 1.03840 0.91485 1.23070 0.98548 0.95910 1.03207 1.22926 1.03787 0.98129 0.95588 0.89317 0.93751 0.94050 0.90540 0.90706 0.89333 0.92357 0.90476 0.92608 0.92527 0.94689 0.88706 0.93033 0.87873 0.92847 0.87362 0.87955 0.88854 0.88938 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.22 101.05 1.03 1.39 16 2 O -0.36 -5.59 7.48 -35.23 -0.26 -5.85 16 3 C 0.14 2.17 0.52 -91.77 -0.05 2.12 16 4 C -0.15 -2.29 7.21 37.16 0.27 -2.02 16 5 C 0.49 9.16 5.24 -10.99 -0.06 9.11 16 6 O -0.56 -11.44 15.35 5.55 0.09 -11.36 16 7 N -0.59 -11.20 2.91 -173.03 -0.50 -11.70 16 8 C 0.11 2.02 6.42 -3.72 -0.02 2.00 16 9 C -0.13 -2.55 6.08 -26.62 -0.16 -2.72 16 10 C -0.11 -2.56 4.96 -26.69 -0.13 -2.69 16 11 C 0.04 0.89 2.17 -91.87 -0.20 0.69 16 12 H 0.03 0.74 7.82 -51.93 -0.41 0.33 16 13 C -0.51 -13.27 8.56 -34.44 -0.29 -13.57 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -24.41 11.31 55.43 0.63 -23.79 16 17 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.10 1.97 4.11 -3.93 -0.02 1.95 16 22 C -0.16 -2.25 3.43 -90.62 -0.31 -2.56 16 23 C -0.17 -2.02 9.65 -26.73 -0.26 -2.28 16 24 C -0.17 -1.86 9.85 -26.73 -0.26 -2.13 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.53 6.99 -51.93 -0.36 0.17 16 27 H 0.04 0.61 7.09 -51.93 -0.37 0.24 16 28 H 0.08 1.10 6.74 -51.93 -0.35 0.75 16 29 H 0.07 0.98 6.96 -51.93 -0.36 0.62 16 30 H 0.09 1.56 5.94 -51.93 -0.31 1.25 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.40 7.03 -51.93 -0.36 1.03 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.10 2.04 3.62 -51.93 -0.19 1.85 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.11 1.58 7.63 -51.93 -0.40 1.18 16 41 H 0.10 1.18 5.89 -51.93 -0.31 0.88 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.11 7.29 -51.93 -0.38 0.73 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -28.55 331.87 -7.66 -36.21 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.03 Total: 5.07 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.56 Total: -9.12 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.12 Total: -35.48 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.18 Total: -17.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.55 -7.66 -36.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.691 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds