Wall clock time and date at job start Tue Mar 31 2020 07:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00137 * 2 1 4 4 C 1.53001 * 109.47616 * 62.96787 * 3 2 1 5 5 C 1.50704 * 109.47333 * 302.96532 * 3 2 1 6 6 O 1.21276 * 120.00039 * 135.36263 * 5 3 2 7 7 N 1.34772 * 119.99749 * 315.36863 * 5 3 2 8 8 C 1.46924 * 120.63504 * 4.17594 * 7 5 3 9 9 C 1.52759 * 109.00828 * 233.58682 * 8 7 5 10 10 C 1.53042 * 109.38522 * 305.58215 * 9 8 7 11 11 C 1.53035 * 109.53460 * 61.23693 * 10 9 8 12 12 H 1.09010 * 109.52181 * 58.60723 * 11 10 9 13 13 C 1.50699 * 109.49950 * 178.68278 * 11 10 9 14 14 H 1.08000 * 120.00042 * 119.83928 * 13 11 10 15 15 C 1.37871 * 120.00118 * 299.84834 * 13 11 10 16 16 N 1.31513 * 120.00041 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00294 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46599 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47272 * 119.99535 * 17 15 13 20 20 H 1.48498 * 109.47055 * 240.00180 * 17 15 13 21 21 C 1.46924 * 120.62984 * 184.45535 * 7 5 3 22 22 C 1.53007 * 109.47173 * 182.96890 * 3 2 1 23 23 C 1.53000 * 117.49476 * 3.03068 * 22 3 2 24 24 C 1.52998 * 117.49680 * 294.37427 * 22 3 2 25 25 H 1.09000 * 109.46636 * 64.67618 * 1 2 3 26 26 H 1.08998 * 109.47038 * 184.67909 * 1 2 3 27 27 H 1.09002 * 109.46618 * 304.67839 * 1 2 3 28 28 H 1.09000 * 109.46782 * 54.48334 * 4 3 2 29 29 H 1.08995 * 109.47253 * 174.48679 * 4 3 2 30 30 H 1.09000 * 109.46974 * 294.48890 * 4 3 2 31 31 H 1.09001 * 109.58357 * 353.41811 * 8 7 5 32 32 H 1.09000 * 109.59349 * 113.83991 * 8 7 5 33 33 H 1.09007 * 109.56433 * 185.55157 * 9 8 7 34 34 H 1.08995 * 109.36453 * 65.49602 * 9 8 7 35 35 H 1.09006 * 109.45565 * 301.22740 * 10 9 8 36 36 H 1.08997 * 109.46056 * 181.26599 * 10 9 8 37 37 H 0.97004 * 120.00024 * 179.97438 * 16 15 13 38 38 H 1.09009 * 109.58531 * 246.15558 * 21 7 5 39 39 H 1.09005 * 109.58743 * 6.57962 * 21 7 5 40 40 H 1.08995 * 115.54954 * 148.70378 * 22 3 2 41 41 H 1.09002 * 117.50313 * 0.02562 * 23 22 3 42 42 H 1.09000 * 117.49326 * 145.02029 * 23 22 3 43 43 H 1.08999 * 117.50281 * 214.98000 * 24 22 3 44 44 H 1.09002 * 117.50149 * 359.97404 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6189 2.0381 1.2849 5 6 1.5084 2.0788 -1.1921 6 8 1.1513 3.2304 -1.0612 7 7 1.4563 1.4907 -2.4036 8 6 1.7983 0.0706 -2.5617 9 6 2.8677 -0.0661 -3.6440 10 6 2.3805 0.6101 -4.9277 11 6 2.1450 2.0990 -4.6641 12 1 3.0708 2.5585 -4.3173 13 6 1.6964 2.7704 -5.9365 14 1 0.7356 3.2619 -5.9780 15 6 2.5124 2.7569 -7.0477 16 7 3.6825 2.1587 -6.9972 17 14 1.9560 3.5885 -8.6253 18 1 0.6107 4.1839 -8.4230 19 1 2.9212 4.6569 -8.9887 20 1 1.8935 2.5851 -9.7183 21 6 1.0622 2.2589 -3.5923 22 6 3.5338 1.1853 -0.0747 23 6 4.1262 -0.2194 -0.2043 24 6 4.2512 0.5456 1.1156 25 1 -0.3632 0.4396 -0.9289 26 1 -0.3633 -1.0242 0.0838 27 1 -0.3632 0.5847 0.8451 28 1 1.8950 1.4315 2.1474 29 1 2.1401 2.9942 1.3311 30 1 0.5426 2.2103 1.2914 31 1 2.1823 -0.3199 -1.6193 32 1 0.9104 -0.4886 -2.8565 33 1 3.0574 -1.1218 -3.8385 34 1 3.7866 0.4131 -3.3067 35 1 1.4483 0.1467 -5.2509 36 1 3.1331 0.4938 -5.7075 37 1 4.2564 2.1489 -7.7791 38 1 0.1129 1.8818 -3.9730 39 1 0.9606 3.3120 -3.3297 40 1 4.0444 1.9967 -0.5933 41 1 3.4306 -1.0580 -0.2367 42 1 5.0268 -0.3320 -0.8079 43 1 5.2340 0.9359 1.3800 44 1 3.6379 0.2107 1.9522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:26 Heat of formation + Delta-G solvation = -51.387793 kcal Electronic energy + Delta-G solvation = -24239.251744 eV Core-core repulsion = 20964.782103 eV Total energy + Delta-G solvation = -3274.469641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.74462 -38.00526 -36.76318 -36.20613 -33.39203 -31.28528 -30.88667 -30.13756 -27.20438 -25.57713 -24.94369 -23.57290 -22.24101 -21.64655 -20.98572 -19.55912 -18.46946 -17.42770 -16.57908 -16.14439 -15.88593 -14.92688 -14.82003 -14.71111 -14.23795 -13.91477 -13.51540 -13.28454 -13.26198 -12.72931 -12.69596 -12.33855 -12.15015 -11.92899 -11.89346 -11.47494 -11.36364 -11.28879 -10.99293 -10.80628 -10.69796 -10.49408 -10.42972 -10.15541 -9.97147 -9.82383 -9.68135 -9.42578 -8.96898 -8.67328 -8.37254 -7.86011 -6.01462 -4.08605 2.87617 3.28574 3.36629 3.40390 3.45613 3.57059 3.86992 4.42529 4.62650 4.70911 4.88937 5.02358 5.21177 5.27612 5.28532 5.35196 5.38873 5.56909 5.65618 5.67692 5.73164 5.78847 5.80847 5.98512 6.04118 6.12532 6.15998 6.24696 6.25520 6.40538 6.43963 6.58542 6.68668 6.86008 6.91653 7.04963 7.22198 7.37487 7.70327 7.93095 8.04011 8.09331 8.37902 8.60452 8.95218 9.56259 11.03930 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026340 B = 0.005086 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.748227 B = 5504.411463 C = 5791.770630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.366 6.366 3 C 0.134 3.866 4 C -0.155 4.155 5 C 0.491 3.509 6 O -0.549 6.549 7 N -0.588 5.588 8 C 0.088 3.912 9 C -0.133 4.133 10 C -0.112 4.112 11 C 0.042 3.958 12 H 0.028 0.972 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.113 3.887 22 C -0.147 4.147 23 C -0.159 4.159 24 C -0.169 4.169 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -7.477 15.073 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.285 6.285 3 C 0.091 3.909 4 C -0.212 4.212 5 C 0.277 3.723 6 O -0.428 6.428 7 N -0.318 5.318 8 C -0.034 4.034 9 C -0.172 4.172 10 C -0.150 4.150 11 C 0.023 3.977 12 H 0.046 0.954 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.008 4.008 22 C -0.166 4.166 23 C -0.196 4.196 24 C -0.206 4.206 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.453 -7.077 15.005 16.654 hybrid contribution -0.436 0.631 -1.150 1.382 sum -1.888 -6.446 13.855 15.397 Atomic orbital electron populations 1.22882 0.80862 1.02884 1.01030 1.87896 1.20043 1.26265 1.94329 1.21151 0.92966 0.83143 0.93591 1.22097 1.02407 1.01245 0.95473 1.20926 0.78960 0.87491 0.84904 1.90661 1.49299 1.17870 1.84969 1.48315 1.64615 1.11571 1.07336 1.22276 0.98377 0.80792 1.01950 1.21911 0.98044 0.99830 0.97371 1.21623 1.00822 0.96777 0.95808 1.18954 0.93530 0.93183 0.92075 0.95366 1.21119 1.03524 1.34592 0.95951 0.92509 1.24932 0.94822 0.95289 0.98756 1.69890 1.09678 1.43435 1.29733 0.86535 0.78808 0.79288 0.83373 1.19752 1.21026 1.21038 1.22033 0.98868 0.95675 0.84180 1.22113 0.90716 0.98990 1.04742 1.22962 1.02539 0.94671 0.99441 1.22970 1.01399 1.03998 0.92206 0.93360 0.89207 0.93423 0.91321 0.90449 0.91906 0.87009 0.92891 0.92720 0.92534 0.94800 0.88811 0.93057 0.92819 0.90561 0.86447 0.87356 0.88594 0.88742 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.88 101.05 1.00 1.22 16 2 O -0.37 -4.68 6.08 -35.23 -0.21 -4.90 16 3 C 0.13 1.90 0.52 -91.77 -0.05 1.85 16 4 C -0.15 -1.95 7.19 37.16 0.27 -1.69 16 5 C 0.49 9.07 5.27 -10.99 -0.06 9.02 16 6 O -0.55 -11.90 15.53 5.56 0.09 -11.82 16 7 N -0.59 -11.17 2.66 -173.03 -0.46 -11.63 16 8 C 0.09 1.46 4.83 -3.93 -0.02 1.44 16 9 C -0.13 -2.46 6.06 -26.83 -0.16 -2.62 16 10 C -0.11 -2.56 4.96 -26.69 -0.13 -2.70 16 11 C 0.04 1.04 2.25 -91.66 -0.21 0.83 16 12 H 0.03 0.79 8.14 -51.92 -0.42 0.36 16 13 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.11 2.51 5.65 -3.71 -0.02 2.49 16 22 C -0.15 -1.95 4.81 -90.62 -0.44 -2.38 16 23 C -0.16 -1.83 8.84 -26.70 -0.24 -2.07 16 24 C -0.17 -1.75 9.73 -26.70 -0.26 -2.01 16 25 H 0.05 0.64 6.62 -51.93 -0.34 0.30 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.50 6.39 -51.93 -0.33 0.17 16 28 H 0.07 0.71 7.18 -51.93 -0.37 0.34 16 29 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.06 0.80 6.78 -51.93 -0.35 0.45 16 31 H 0.11 1.64 2.46 -51.93 -0.13 1.51 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 2.42 6.05 -51.93 -0.31 2.10 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.08 1.81 7.03 -51.93 -0.37 1.45 16 40 H 0.12 1.74 8.06 -51.93 -0.42 1.32 16 41 H 0.11 1.24 6.44 -51.93 -0.33 0.91 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.10 0.92 7.32 -51.93 -0.38 0.54 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -29.83 332.09 -7.79 -37.62 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.11 Total: 3.26 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.70 Total: -9.28 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.17 Total: -36.09 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.13 Total: -16.71 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.83 -7.79 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.772 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds