Wall clock time and date at job start Tue Mar 31 2020 07:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99673 * 2 1 4 4 C 1.53002 * 109.47085 * 54.69114 * 3 2 1 5 5 C 1.50693 * 109.47201 * 294.68671 * 3 2 1 6 6 O 1.21277 * 120.00372 * 4.36441 * 5 3 2 7 7 N 1.34774 * 119.99761 * 184.36287 * 5 3 2 8 8 C 1.46924 * 120.63440 * 354.60784 * 7 5 3 9 9 C 1.53189 * 108.78118 * 126.36815 * 8 7 5 10 10 C 1.53043 * 109.31332 * 54.63336 * 9 8 7 11 11 C 1.53046 * 109.53608 * 298.63875 * 10 9 8 12 12 H 1.08996 * 109.49543 * 301.37788 * 11 10 9 13 13 C 1.50700 * 109.49295 * 181.31930 * 11 10 9 14 14 H 1.08001 * 119.99377 * 240.00145 * 13 11 10 15 15 C 1.37870 * 120.00491 * 59.99778 * 13 11 10 16 16 N 1.31520 * 119.99624 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00381 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46958 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47321 * 120.00073 * 17 15 13 20 20 H 1.48500 * 109.47036 * 240.00233 * 17 15 13 21 21 C 1.46930 * 120.62901 * 174.32159 * 7 5 3 22 22 C 1.53007 * 109.46555 * 174.68626 * 3 2 1 23 23 C 1.52994 * 117.50219 * 13.46371 * 22 3 2 24 24 C 1.52997 * 117.50091 * 304.80129 * 22 3 2 25 25 H 1.08999 * 109.47071 * 304.94906 * 1 2 3 26 26 H 1.08993 * 109.47499 * 64.95208 * 1 2 3 27 27 H 1.09001 * 109.47106 * 184.95085 * 1 2 3 28 28 H 1.09001 * 109.46814 * 304.99291 * 4 3 2 29 29 H 1.09000 * 109.46808 * 64.98668 * 4 3 2 30 30 H 1.08997 * 109.46709 * 184.98863 * 4 3 2 31 31 H 1.09003 * 109.58354 * 246.15759 * 8 7 5 32 32 H 1.08999 * 109.58310 * 6.57389 * 8 7 5 33 33 H 1.09000 * 109.49882 * 174.58771 * 9 8 7 34 34 H 1.09004 * 109.49438 * 294.65178 * 9 8 7 35 35 H 1.08996 * 109.45605 * 58.65555 * 10 9 8 36 36 H 1.08998 * 109.45469 * 178.62116 * 10 9 8 37 37 H 0.97001 * 119.99738 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58876 * 353.42588 * 21 7 5 39 39 H 1.09003 * 109.58384 * 113.84897 * 21 7 5 40 40 H 1.08998 * 115.54285 * 159.13026 * 22 3 2 41 41 H 1.09002 * 117.49751 * 359.97438 * 23 22 3 42 42 H 1.09002 * 117.50016 * 145.01428 * 23 22 3 43 43 H 1.09004 * 117.49556 * 214.98241 * 24 22 3 44 44 H 1.08997 * 117.50125 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4559 2.1105 1.1772 5 6 1.6723 2.0058 -1.2909 6 8 0.9353 1.4744 -2.0942 7 7 2.1893 3.2226 -1.5527 8 6 2.9871 3.9303 -0.5421 9 6 4.3316 4.3237 -1.1621 10 6 4.0836 5.1257 -2.4417 11 6 3.3220 4.2605 -3.4485 12 1 3.8994 3.3620 -3.6661 13 6 3.1067 5.0401 -4.7201 14 1 2.1039 5.2334 -5.0717 15 6 4.1896 5.5068 -5.4345 16 7 5.4106 5.2711 -5.0065 17 14 3.9226 6.4738 -7.0102 18 1 2.4665 6.6008 -7.2723 19 1 4.5204 7.8257 -6.8687 20 1 4.5688 5.7629 -8.1427 21 6 1.9708 3.8640 -2.8564 22 6 3.5298 1.1872 0.1336 23 6 4.1522 -0.1942 -0.0786 24 6 4.0749 0.4028 1.3288 25 1 -0.3633 0.5887 0.8423 26 1 -0.3634 0.4350 -0.9309 27 1 -0.3633 -1.0238 0.0887 28 1 0.3669 2.1196 1.1304 29 1 1.7755 1.6524 2.1131 30 1 1.8304 3.1329 1.1265 31 1 2.4570 4.8266 -0.2201 32 1 3.1565 3.2763 0.3133 33 1 4.8943 4.9325 -0.4544 34 1 4.8995 3.4242 -1.4003 35 1 3.4948 6.0122 -2.2062 36 1 5.0385 5.4278 -2.8717 37 1 6.1726 5.5997 -5.5089 38 1 1.4699 3.1663 -3.5276 39 1 1.3562 4.7549 -2.7270 40 1 4.1000 2.0532 -0.2026 41 1 3.4790 -1.0189 -0.3130 42 1 5.1321 -0.2371 -0.5540 43 1 5.0041 0.7526 1.7787 44 1 3.3511 -0.0285 2.0201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:30 Heat of formation + Delta-G solvation = -41.195035 kcal Electronic energy + Delta-G solvation = -24072.817837 eV Core-core repulsion = 20798.790187 eV Total energy + Delta-G solvation = -3274.027649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75629 -38.06171 -36.95611 -35.80271 -33.67918 -31.72635 -31.10470 -29.74396 -27.20584 -25.34563 -25.12386 -23.67219 -22.19659 -21.75814 -20.89610 -20.01541 -18.49320 -17.04706 -16.37138 -16.31645 -15.72803 -15.15866 -14.86814 -14.66263 -14.18512 -14.11161 -13.73311 -13.34938 -13.18446 -12.98100 -12.72504 -12.38400 -12.24150 -11.97340 -11.72062 -11.42653 -11.29053 -11.14830 -11.00270 -10.79555 -10.70607 -10.47201 -10.32985 -10.28411 -9.98329 -9.93632 -9.72830 -9.45459 -8.90454 -8.64025 -8.40184 -7.92462 -6.04103 -4.11107 2.89388 3.27462 3.35652 3.38980 3.45164 3.76152 3.85942 4.40956 4.52926 4.69150 4.87560 5.05248 5.17790 5.23945 5.25921 5.29618 5.38841 5.49047 5.55656 5.62245 5.68409 5.71003 5.78055 5.94875 5.96738 6.05055 6.07850 6.16197 6.28567 6.32580 6.36993 6.45406 6.63704 6.77975 6.93968 7.11930 7.15586 7.30558 7.67010 7.88697 7.97712 8.05110 8.34921 8.59345 8.92713 9.54027 11.01508 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.004971 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.791070 B = 5631.438823 C = 6019.326576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.358 6.358 3 C 0.134 3.866 4 C -0.189 4.189 5 C 0.496 3.504 6 O -0.542 6.542 7 N -0.596 5.596 8 C 0.086 3.914 9 C -0.137 4.137 10 C -0.112 4.112 11 C 0.039 3.961 12 H 0.029 0.971 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.117 3.883 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.167 4.167 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -5.704 15.037 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.275 6.275 3 C 0.091 3.909 4 C -0.246 4.246 5 C 0.283 3.717 6 O -0.420 6.420 7 N -0.329 5.329 8 C -0.037 4.037 9 C -0.175 4.175 10 C -0.150 4.150 11 C 0.020 3.980 12 H 0.047 0.953 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.004 4.004 22 C -0.183 4.183 23 C -0.197 4.197 24 C -0.204 4.204 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.652 -6.124 14.557 16.210 hybrid contribution -0.199 0.873 -0.906 1.274 sum -3.852 -5.251 13.652 15.125 Atomic orbital electron populations 1.23031 0.80978 1.02360 1.01812 1.87918 1.20258 1.24670 1.94703 1.20729 0.93061 0.84637 0.92469 1.22717 1.02119 1.01704 0.98053 1.21084 0.80639 0.81468 0.88490 1.90606 1.36941 1.65393 1.49042 1.48291 1.50775 1.17375 1.16428 1.22333 0.93205 0.96845 0.91314 1.22059 0.94941 1.00920 0.99625 1.21623 1.03938 0.97000 0.92404 1.18899 0.89984 0.95831 0.93252 0.95260 1.21104 0.92877 1.34403 1.06781 0.92449 1.24930 0.95143 0.96081 0.97636 1.69882 0.97749 1.46178 1.38955 0.86524 0.78354 0.79655 0.83411 1.19736 1.21029 1.21011 1.21919 1.00669 0.96065 0.81707 1.22622 0.91623 0.98441 1.05604 1.22887 1.01919 0.96277 0.98577 1.22922 1.02406 1.03746 0.91318 0.94249 0.91129 0.90055 0.91433 0.90602 0.89631 0.91804 0.89033 0.92306 0.92240 0.94543 0.88566 0.93024 0.90416 0.92726 0.84766 0.87671 0.88775 0.88657 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.17 101.05 1.03 1.22 16 2 O -0.36 -5.48 8.52 -55.10 -0.47 -5.95 16 3 C 0.13 1.98 0.65 -91.77 -0.06 1.92 16 4 C -0.19 -2.17 7.87 37.16 0.29 -1.88 16 5 C 0.50 9.26 6.33 -10.99 -0.07 9.20 16 6 O -0.54 -11.91 13.58 -14.31 -0.19 -12.10 16 7 N -0.60 -11.02 2.97 -173.04 -0.51 -11.53 16 8 C 0.09 1.30 4.06 -3.71 -0.02 1.28 16 9 C -0.14 -2.35 5.73 -26.61 -0.15 -2.51 16 10 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 11 C 0.04 0.96 2.24 -91.87 -0.21 0.76 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 13 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 14 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -24.77 11.31 55.43 0.63 -24.14 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.12 2.54 5.61 -3.93 -0.02 2.52 16 22 C -0.17 -2.24 4.05 -90.62 -0.37 -2.60 16 23 C -0.16 -2.09 9.89 -26.70 -0.26 -2.35 16 24 C -0.17 -1.81 9.61 -26.70 -0.26 -2.07 16 25 H 0.04 0.44 5.95 -51.93 -0.31 0.13 16 26 H 0.07 1.12 5.82 -51.93 -0.30 0.82 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.76 6.09 -51.93 -0.32 0.45 16 29 H 0.08 0.74 7.47 -51.93 -0.39 0.35 16 30 H 0.09 0.92 4.96 -51.93 -0.26 0.67 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.15 2.91 -51.93 -0.15 1.00 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.07 7.17 -51.93 -0.37 0.69 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.41 6.04 -51.93 -0.31 2.09 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.08 1.83 7.04 -51.93 -0.37 1.46 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.13 1.89 4.22 -51.93 -0.22 1.67 16 41 H 0.10 1.48 7.13 -51.93 -0.37 1.11 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.99 7.89 -51.93 -0.41 0.58 16 LS Contribution 326.15 15.07 4.92 4.92 Total: -1.00 -30.13 326.15 -7.97 -38.10 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.70 Total: 4.30 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.61 Total: -9.60 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.11 Total: -35.67 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.66 Total: -18.05 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.13 -7.97 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds