Wall clock time and date at job start Tue Mar 31 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99528 * 2 1 4 4 C 1.52998 * 109.47221 * 56.59883 * 3 2 1 5 5 C 1.50702 * 109.46594 * 176.59523 * 3 2 1 6 6 O 1.21284 * 119.99747 * 230.40431 * 5 3 2 7 7 N 1.34772 * 120.00366 * 50.40407 * 5 3 2 8 8 C 1.46932 * 120.62930 * 356.19400 * 7 5 3 9 9 C 1.53189 * 108.77652 * 233.60550 * 8 7 5 10 10 C 1.53035 * 109.31324 * 305.36912 * 9 8 7 11 11 C 1.53039 * 109.54060 * 61.36372 * 10 9 8 12 12 H 1.08996 * 109.49748 * 58.61734 * 11 10 9 13 13 C 1.50704 * 109.49661 * 178.68064 * 11 10 9 14 14 H 1.08003 * 119.99417 * 119.99789 * 13 11 10 15 15 C 1.37869 * 120.00104 * 299.72670 * 13 11 10 16 16 N 1.31514 * 120.00446 * 0.27226 * 15 13 11 17 17 Si 1.86809 * 120.00020 * 180.27536 * 15 13 11 18 18 H 1.48499 * 109.46868 * 89.99746 * 17 15 13 19 19 H 1.48492 * 109.47006 * 209.99874 * 17 15 13 20 20 H 1.48501 * 109.46841 * 329.99927 * 17 15 13 21 21 C 1.46920 * 120.63356 * 176.19435 * 7 5 3 22 22 C 1.52994 * 109.47410 * 296.59396 * 3 2 1 23 23 C 1.52997 * 117.50008 * 135.77507 * 22 3 2 24 24 C 1.53007 * 117.49760 * 67.11634 * 22 3 2 25 25 H 1.09005 * 109.47035 * 307.51492 * 1 2 3 26 26 H 1.08990 * 109.47348 * 67.52077 * 1 2 3 27 27 H 1.08999 * 109.46910 * 187.52187 * 1 2 3 28 28 H 1.08994 * 109.47542 * 175.43589 * 4 3 2 29 29 H 1.09007 * 109.46799 * 295.43648 * 4 3 2 30 30 H 1.09004 * 109.47650 * 55.42915 * 4 3 2 31 31 H 1.09004 * 109.58351 * 113.82002 * 8 7 5 32 32 H 1.08996 * 109.70165 * 353.46831 * 8 7 5 33 33 H 1.08997 * 109.49572 * 185.40819 * 9 8 7 34 34 H 1.08999 * 109.52128 * 65.33376 * 9 8 7 35 35 H 1.09002 * 109.45788 * 301.33842 * 10 9 8 36 36 H 1.09004 * 109.46128 * 181.38630 * 10 9 8 37 37 H 0.96995 * 120.00524 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.58559 * 6.60514 * 21 7 5 39 39 H 1.08996 * 109.58884 * 246.18105 * 21 7 5 40 40 H 1.09003 * 115.54722 * 281.45178 * 22 3 2 41 41 H 1.09003 * 117.49769 * 0.02562 * 23 22 3 42 42 H 1.09003 * 117.49877 * 145.01854 * 23 22 3 43 43 H 1.08999 * 117.49654 * 214.97933 * 24 22 3 44 44 H 1.08997 * 117.49713 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4921 2.0944 1.2042 5 6 3.5102 1.1875 0.0844 6 8 4.1230 1.8268 0.9130 7 7 4.1706 0.3717 -0.7609 8 6 3.4364 -0.4716 -1.7142 9 6 3.8902 -1.9242 -1.5388 10 6 5.4126 -1.9989 -1.6762 11 6 6.0675 -1.1528 -0.5821 12 1 5.7534 -1.5167 0.3962 13 6 7.5667 -1.2531 -0.6984 14 1 8.1556 -0.3641 -0.8697 15 6 8.1869 -2.4788 -0.5806 16 7 7.4698 -3.5613 -0.3720 17 14 10.0459 -2.6019 -0.7171 18 1 10.6526 -2.4439 0.6290 19 1 10.4145 -3.9284 -1.2736 20 1 10.5482 -1.5313 -1.6153 21 6 5.6384 0.3085 -0.7467 22 6 1.6277 2.0341 -1.2898 23 6 1.1832 3.4933 -1.1717 24 6 0.1553 2.4027 -1.4830 25 1 -0.3633 0.6258 0.8152 26 1 -0.3633 0.3929 -0.9495 27 1 -0.3633 -1.0188 0.1345 28 1 1.9959 3.0598 1.2502 29 1 0.4180 2.2495 1.1021 30 1 1.6931 1.5358 2.1184 31 1 3.6486 -0.1428 -2.7316 32 1 2.3661 -0.3973 -1.5219 33 1 3.4248 -2.5456 -2.3038 34 1 3.5962 -2.2810 -0.5517 35 1 5.7079 -1.6195 -2.6545 36 1 5.7358 -3.0351 -1.5763 37 1 7.9060 -4.4236 -0.2895 38 1 6.0215 0.8979 0.0864 39 1 6.0301 0.7009 -1.6851 40 1 2.1961 1.7511 -2.1758 41 1 1.1638 3.9344 -0.1752 42 1 1.4590 4.1704 -1.9802 43 1 -0.2448 2.3626 -2.4961 44 1 -0.5407 2.1264 -0.6909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:35 Heat of formation + Delta-G solvation = -44.779190 kcal Electronic energy + Delta-G solvation = -23952.458794 eV Core-core repulsion = 20678.275724 eV Total energy + Delta-G solvation = -3274.183070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75530 -38.45117 -36.70517 -36.06432 -33.40276 -31.29108 -30.80744 -30.00918 -27.54055 -25.38608 -24.87326 -23.90204 -22.61817 -21.56846 -20.95357 -19.33200 -18.45948 -17.20835 -16.81455 -16.20662 -16.06561 -15.07574 -14.87864 -14.65200 -14.23989 -13.97332 -13.65448 -13.30501 -13.08936 -12.69332 -12.45617 -12.32597 -12.29824 -12.13389 -11.94692 -11.81269 -11.38832 -11.11727 -10.94876 -10.81965 -10.67872 -10.63949 -10.36441 -10.14957 -9.87475 -9.78807 -9.48930 -9.32245 -9.15553 -8.73773 -8.33295 -7.81636 -5.96894 -4.04190 2.75787 3.32888 3.39060 3.41221 3.46541 3.59645 3.94620 4.45166 4.46311 4.57949 4.75828 4.78541 4.96839 5.12299 5.26620 5.32591 5.33704 5.38249 5.59326 5.62246 5.63270 5.70816 5.74201 5.83531 5.88448 5.94128 6.07488 6.18713 6.25876 6.44604 6.49625 6.62517 6.73641 6.92974 7.01223 7.05817 7.27525 7.42070 7.74673 7.98619 8.08059 8.14154 8.42388 8.65023 8.99520 9.60345 11.08504 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.004607 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.506112 B = 6075.634050 C = 6374.117921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.357 6.357 3 C 0.131 3.869 4 C -0.166 4.166 5 C 0.531 3.469 6 O -0.544 6.544 7 N -0.587 5.587 8 C 0.095 3.905 9 C -0.129 4.129 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.030 0.970 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.115 3.885 22 C -0.181 4.181 23 C -0.172 4.172 24 C -0.177 4.177 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.061 8.749 -3.229 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.275 6.275 3 C 0.089 3.911 4 C -0.223 4.223 5 C 0.317 3.683 6 O -0.423 6.423 7 N -0.317 5.317 8 C -0.028 4.028 9 C -0.168 4.168 10 C -0.151 4.151 11 C 0.022 3.978 12 H 0.048 0.952 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.006 4.006 22 C -0.200 4.200 23 C -0.209 4.209 24 C -0.214 4.214 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.581 8.711 -2.783 18.936 hybrid contribution 0.842 -0.102 -0.235 0.880 sum -15.739 8.609 -3.017 18.191 Atomic orbital electron populations 1.23160 0.81681 1.02847 1.00766 1.88124 1.19720 1.25510 1.94188 1.21098 0.91636 0.84426 0.93946 1.22280 1.00551 1.01836 0.97644 1.19775 0.87558 0.79975 0.81008 1.90672 1.68392 1.46783 1.36407 1.48213 1.08430 1.39350 1.35714 1.22173 0.97852 0.91507 0.91220 1.21921 0.99604 0.94064 1.01162 1.21632 0.90388 1.04792 0.98239 1.18957 0.95067 0.88186 0.95610 0.95236 1.21084 0.91252 0.93441 1.49441 0.92546 1.24931 0.98071 0.95803 0.94982 1.69882 1.34932 0.98493 1.49413 0.86591 0.85813 0.77286 0.78286 1.20689 1.21278 1.19911 1.22036 0.76084 1.01365 1.01126 1.22843 0.98806 0.98809 0.99502 1.23142 1.02984 0.91020 1.03743 1.23199 0.91526 1.03464 1.03182 0.93566 0.92567 0.89677 0.90056 0.91793 0.91010 0.93075 0.87913 0.92835 0.92226 0.94809 0.88789 0.93023 0.90397 0.92699 0.86660 0.87813 0.88496 0.88283 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.23 101.05 0.93 1.04 16 2 O -0.36 -5.03 7.44 -35.23 -0.26 -5.30 16 3 C 0.13 1.88 0.65 -91.77 -0.06 1.82 16 4 C -0.17 -2.09 6.10 37.16 0.23 -1.87 16 5 C 0.53 10.19 6.71 -10.99 -0.07 10.12 16 6 O -0.54 -12.09 15.30 5.55 0.08 -12.00 16 7 N -0.59 -11.57 2.97 -172.77 -0.51 -12.08 16 8 C 0.09 1.62 4.93 -3.71 -0.02 1.61 16 9 C -0.13 -2.49 6.08 -26.62 -0.16 -2.65 16 10 C -0.11 -2.63 4.96 -26.69 -0.13 -2.76 16 11 C 0.04 1.04 2.25 -91.65 -0.21 0.84 16 12 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 16 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.11 2.59 5.66 -3.71 -0.02 2.57 16 22 C -0.18 -2.11 4.46 -90.62 -0.40 -2.52 16 23 C -0.17 -1.66 9.67 -26.70 -0.26 -1.92 16 24 C -0.18 -1.50 7.73 -26.69 -0.21 -1.70 16 25 H 0.05 0.39 5.86 -51.93 -0.30 0.09 16 26 H 0.06 0.46 5.27 -51.93 -0.27 0.19 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.06 6.67 -51.93 -0.35 0.71 16 29 H 0.06 0.61 5.17 -51.93 -0.27 0.34 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.57 4.01 -51.93 -0.21 1.36 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 2.47 6.05 -51.93 -0.31 2.16 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.12 1.43 7.07 -51.93 -0.37 1.07 16 41 H 0.10 0.98 5.98 -51.93 -0.31 0.67 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.76 5.08 -51.93 -0.26 0.49 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -30.95 325.82 -7.74 -38.69 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.79 Total: 2.49 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.77 Total: -8.28 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.11 Total: -36.92 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.18 Total: -17.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.95 -7.74 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.092 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds