Wall clock time and date at job start Tue Mar 31 2020 07:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.52392 * 2 1 4 4 O 1.21279 * 119.99660 * 241.54824 * 3 2 1 5 5 N 1.34778 * 119.99968 * 61.54003 * 3 2 1 6 6 C 1.46919 * 120.63118 * 354.66080 * 5 3 2 7 7 C 1.53195 * 108.77662 * 126.43072 * 6 5 3 8 8 C 1.53037 * 109.31338 * 54.63351 * 7 6 5 9 9 C 1.53039 * 109.53562 * 298.63823 * 8 7 6 10 10 H 1.09001 * 109.49691 * 301.37492 * 9 8 7 11 11 C 1.50709 * 109.49350 * 181.31406 * 9 8 7 12 12 H 1.07996 * 120.00041 * 240.05924 * 11 9 8 13 13 C 1.37879 * 120.00095 * 60.06735 * 11 9 8 14 14 N 1.31523 * 119.99804 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00081 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47017 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47020 * 299.99813 * 15 13 11 18 18 H 1.48500 * 109.47237 * 59.99745 * 15 13 11 19 19 C 1.46938 * 120.60395 * 174.67879 * 5 3 2 20 20 C 1.53177 * 109.52456 * 120.12543 * 2 1 3 21 21 C 1.53173 * 109.03851 * 176.95078 * 20 2 1 22 22 C 1.53100 * 109.16225 * 303.01871 * 21 20 2 23 23 O 1.42898 * 109.41381 * 57.60839 * 22 21 20 24 24 C 1.43041 * 114.13273 * 298.83693 * 23 22 21 25 25 H 1.08995 * 109.46922 * 70.68431 * 1 2 3 26 26 H 1.09003 * 109.46800 * 190.68715 * 1 2 3 27 27 H 1.09003 * 109.46914 * 310.68242 * 1 2 3 28 28 H 1.09003 * 109.59077 * 6.64543 * 6 5 3 29 29 H 1.09002 * 109.58758 * 246.21907 * 6 5 3 30 30 H 1.09003 * 109.49477 * 294.68147 * 7 6 5 31 31 H 1.09000 * 109.52378 * 174.60638 * 7 6 5 32 32 H 1.08993 * 109.46330 * 178.61536 * 8 7 6 33 33 H 1.09003 * 109.45785 * 58.65602 * 8 7 6 34 34 H 0.96994 * 119.99571 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.55910 * 113.76583 * 19 5 3 36 36 H 1.09001 * 109.61203 * 353.33948 * 19 5 3 37 37 H 1.09005 * 109.54229 * 296.81639 * 20 2 1 38 38 H 1.09001 * 109.54433 * 57.07706 * 20 2 1 39 39 H 1.08989 * 109.52348 * 62.92244 * 21 20 2 40 40 H 1.08998 * 109.52186 * 183.05300 * 21 20 2 41 41 H 1.08996 * 109.47959 * 177.59666 * 22 21 20 42 42 H 1.09003 * 109.47674 * 297.61702 * 22 21 20 43 43 H 1.08996 * 109.46734 * 301.19318 * 24 23 22 44 44 H 1.09004 * 109.56648 * 181.10774 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7079 1.8246 -0.9235 5 7 1.7346 2.2414 1.0262 6 6 0.8241 1.8048 2.0933 7 6 1.5194 1.9982 3.4446 8 6 1.9852 3.4505 3.5708 9 6 2.9910 3.7637 2.4608 10 1 3.8386 3.0823 2.5350 11 6 3.4734 5.1842 2.6052 12 1 3.3141 5.8925 1.8057 13 6 4.1182 5.5794 3.7581 14 7 4.3118 4.7168 4.7319 15 14 4.7167 7.3398 3.9369 16 1 5.3718 7.5080 5.2590 17 1 5.6916 7.6431 2.8586 18 1 3.5619 8.2680 3.8355 19 6 2.3131 3.5902 1.0981 20 6 2.0420 -0.7246 1.2487 21 6 3.5717 -0.7850 1.1994 22 6 4.0058 -1.4794 -0.0942 23 8 3.4708 -0.7728 -1.2151 24 6 2.0416 -0.7243 -1.2480 25 1 -0.3633 0.3399 -0.9698 26 1 -0.3633 -1.0099 0.1906 27 1 -0.3633 0.6699 0.7793 28 1 0.5786 0.7516 1.9562 29 1 -0.0875 2.4015 2.0627 30 1 2.3806 1.3330 3.5091 31 1 0.8214 1.7687 4.2497 32 1 2.4585 3.5970 4.5416 33 1 1.1267 4.1162 3.4815 34 1 4.7657 4.9948 5.5428 35 1 1.5229 4.3326 0.9858 36 1 3.0501 3.7150 0.3047 37 1 1.7270 -0.1818 2.1400 38 1 1.6376 -1.7365 1.2746 39 1 3.9772 0.2264 1.2236 40 1 3.9419 -1.3465 2.0571 41 1 5.0940 -1.4872 -0.1550 42 1 3.6340 -2.5041 -0.0991 43 1 1.6441 -1.7390 -1.2680 44 1 1.7149 -0.1880 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:22 Heat of formation + Delta-G solvation = -79.318984 kcal Electronic energy + Delta-G solvation = -24345.925702 eV Core-core repulsion = 21070.244874 eV Total energy + Delta-G solvation = -3275.680828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85399 -38.26529 -36.58767 -34.90125 -33.15351 -32.06026 -31.26029 -30.10705 -27.02777 -25.46027 -25.11662 -24.68970 -22.42719 -21.70479 -21.26519 -19.39877 -18.15759 -16.50845 -16.23262 -16.02622 -15.91214 -15.15984 -14.92283 -14.63295 -14.34730 -13.86626 -13.64751 -13.41297 -13.02694 -12.85208 -12.66639 -12.42775 -12.20054 -12.13788 -11.88707 -11.69369 -11.62518 -11.09070 -10.94598 -10.78587 -10.72295 -10.59612 -10.34614 -10.18769 -9.91353 -9.74611 -9.44325 -9.36884 -9.02422 -8.77083 -8.37449 -7.82692 -6.01899 -4.08799 3.15209 3.31601 3.35767 3.38903 3.56496 4.03528 4.42752 4.54589 4.63329 4.77770 4.95247 5.07216 5.20420 5.26875 5.31439 5.41292 5.42664 5.52081 5.54317 5.64704 5.66797 5.76068 5.80043 5.81904 5.91611 6.04827 6.15394 6.19340 6.31313 6.34811 6.42828 6.49740 6.68722 6.83455 7.01620 7.18159 7.34073 7.34704 7.68984 7.92888 8.07210 8.09104 8.38536 8.76619 8.94964 9.56007 11.03541 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.005145 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.031303 B = 5440.422218 C = 5598.367895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C 0.524 3.476 4 O -0.535 6.535 5 N -0.602 5.602 6 C 0.088 3.912 7 C -0.137 4.137 8 C -0.111 4.111 9 C 0.042 3.958 10 H 0.028 0.972 11 C -0.514 4.514 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.118 3.882 20 C -0.123 4.123 21 C -0.160 4.160 22 C 0.060 3.940 23 O -0.364 6.364 24 C 0.091 3.909 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.261 0.739 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 -13.631 -4.490 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.121 4.121 3 C 0.310 3.690 4 O -0.411 6.411 5 N -0.335 5.335 6 C -0.034 4.034 7 C -0.175 4.175 8 C -0.149 4.149 9 C 0.023 3.977 10 H 0.046 0.954 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.721 3.279 16 H -0.213 1.213 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.003 4.003 20 C -0.161 4.161 21 C -0.197 4.197 22 C -0.017 4.017 23 O -0.282 6.282 24 C 0.013 3.987 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.737 -13.320 -4.950 16.180 hybrid contribution 0.115 0.870 0.627 1.079 sum -7.622 -12.450 -4.323 15.224 Atomic orbital electron populations 1.22178 0.92495 1.03117 1.03643 1.21504 0.97363 0.94575 0.98680 1.20077 0.80329 0.86394 0.82177 1.90680 1.39024 1.76302 1.35134 1.48194 1.46525 1.16233 1.22535 1.22317 0.92596 1.00122 0.88389 1.22048 0.99542 1.01306 0.94594 1.21616 0.98227 0.90657 1.04450 1.18946 0.93520 0.96911 0.88337 0.95379 1.21055 1.37007 0.95442 1.01757 0.92576 1.24929 0.95639 0.97370 0.95830 1.69864 1.42360 1.34169 1.06468 0.86643 0.79075 0.85009 0.77204 1.21316 1.20218 1.20271 1.21963 0.97167 0.79706 1.01427 1.22027 0.96194 1.00474 0.97367 1.22205 0.95936 1.03097 0.98482 1.22570 0.99179 0.93919 0.86066 1.88086 1.19542 1.76073 1.44451 1.22379 0.81677 0.98014 0.96616 0.91858 0.91540 0.90160 0.88947 0.92165 0.92338 0.92606 0.88684 0.94663 0.92958 0.92963 0.90462 0.89131 0.91153 0.90414 0.90645 0.89073 0.93666 0.93049 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.10 37.16 0.30 -1.34 16 2 C -0.12 -1.59 0.50 -155.52 -0.08 -1.67 16 3 C 0.52 9.62 5.25 -10.99 -0.06 9.56 16 4 O -0.53 -11.99 14.82 -10.53 -0.16 -12.15 16 5 N -0.60 -11.15 2.97 -172.76 -0.51 -11.66 16 6 C 0.09 1.34 4.00 -3.71 -0.01 1.33 16 7 C -0.14 -2.36 5.75 -26.61 -0.15 -2.52 16 8 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.12 2.60 5.64 -3.71 -0.02 2.58 16 20 C -0.12 -1.50 4.46 -26.55 -0.12 -1.62 16 21 C -0.16 -2.17 5.88 -26.59 -0.16 -2.33 16 22 C 0.06 0.77 6.84 37.21 0.25 1.03 16 23 O -0.36 -5.85 9.87 -51.31 -0.51 -6.36 16 24 C 0.09 1.22 5.07 37.21 0.19 1.41 16 25 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 26 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 27 H 0.08 0.84 4.70 -51.93 -0.24 0.60 16 28 H 0.09 1.14 2.71 -51.93 -0.14 1.00 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.05 7.60 -51.93 -0.39 0.66 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.85 7.04 -51.93 -0.37 1.49 16 37 H 0.09 1.14 4.05 -51.93 -0.21 0.93 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.37 7.39 -51.94 -0.38 0.98 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 1.34 8.02 -51.93 -0.42 0.92 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -31.08 323.62 -8.35 -39.43 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.08 Total: 1.97 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.58 Total: -7.99 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.11 Total: -35.96 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.66 Total: -18.51 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.08 -8.35 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.887 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds