Wall clock time and date at job start Tue Mar 31 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.52392 * 2 1 4 4 O 1.21279 * 119.99660 * 241.54824 * 3 2 1 5 5 N 1.34778 * 119.99968 * 61.54003 * 3 2 1 6 6 C 1.46919 * 120.63118 * 354.66080 * 5 3 2 7 7 C 1.53195 * 108.77662 * 126.43072 * 6 5 3 8 8 C 1.53037 * 109.31338 * 54.63351 * 7 6 5 9 9 C 1.53039 * 109.53562 * 298.63823 * 8 7 6 10 10 H 1.09001 * 109.49691 * 301.37492 * 9 8 7 11 11 C 1.50709 * 109.49350 * 181.31406 * 9 8 7 12 12 H 1.07996 * 120.00041 * 240.05924 * 11 9 8 13 13 C 1.37879 * 120.00095 * 60.06735 * 11 9 8 14 14 N 1.31523 * 119.99804 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00081 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47017 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47020 * 299.99813 * 15 13 11 18 18 H 1.48500 * 109.47237 * 59.99745 * 15 13 11 19 19 C 1.46938 * 120.60395 * 174.67879 * 5 3 2 20 20 C 1.53177 * 109.52456 * 120.12543 * 2 1 3 21 21 C 1.53173 * 109.03851 * 176.95078 * 20 2 1 22 22 C 1.53100 * 109.16225 * 303.01871 * 21 20 2 23 23 O 1.42898 * 109.41381 * 57.60839 * 22 21 20 24 24 C 1.43041 * 114.13273 * 298.83693 * 23 22 21 25 25 H 1.08995 * 109.46922 * 70.68431 * 1 2 3 26 26 H 1.09003 * 109.46800 * 190.68715 * 1 2 3 27 27 H 1.09003 * 109.46914 * 310.68242 * 1 2 3 28 28 H 1.09003 * 109.59077 * 6.64543 * 6 5 3 29 29 H 1.09002 * 109.58758 * 246.21907 * 6 5 3 30 30 H 1.09003 * 109.49477 * 294.68147 * 7 6 5 31 31 H 1.09000 * 109.52378 * 174.60638 * 7 6 5 32 32 H 1.08993 * 109.46330 * 178.61536 * 8 7 6 33 33 H 1.09003 * 109.45785 * 58.65602 * 8 7 6 34 34 H 0.96994 * 119.99571 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.55910 * 113.76583 * 19 5 3 36 36 H 1.09001 * 109.61203 * 353.33948 * 19 5 3 37 37 H 1.09005 * 109.54229 * 296.81639 * 20 2 1 38 38 H 1.09001 * 109.54433 * 57.07706 * 20 2 1 39 39 H 1.08989 * 109.52348 * 62.92244 * 21 20 2 40 40 H 1.08998 * 109.52186 * 183.05300 * 21 20 2 41 41 H 1.08996 * 109.47959 * 177.59666 * 22 21 20 42 42 H 1.09003 * 109.47674 * 297.61702 * 22 21 20 43 43 H 1.08996 * 109.46734 * 301.19318 * 24 23 22 44 44 H 1.09004 * 109.56648 * 181.10774 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7079 1.8246 -0.9235 5 7 1.7346 2.2414 1.0262 6 6 0.8241 1.8048 2.0933 7 6 1.5194 1.9982 3.4446 8 6 1.9852 3.4505 3.5708 9 6 2.9910 3.7637 2.4608 10 1 3.8386 3.0823 2.5350 11 6 3.4734 5.1842 2.6052 12 1 3.3141 5.8925 1.8057 13 6 4.1182 5.5794 3.7581 14 7 4.3118 4.7168 4.7319 15 14 4.7167 7.3398 3.9369 16 1 5.3718 7.5080 5.2590 17 1 5.6916 7.6431 2.8586 18 1 3.5619 8.2680 3.8355 19 6 2.3131 3.5902 1.0981 20 6 2.0420 -0.7246 1.2487 21 6 3.5717 -0.7850 1.1994 22 6 4.0058 -1.4794 -0.0942 23 8 3.4708 -0.7728 -1.2151 24 6 2.0416 -0.7243 -1.2480 25 1 -0.3633 0.3399 -0.9698 26 1 -0.3633 -1.0099 0.1906 27 1 -0.3633 0.6699 0.7793 28 1 0.5786 0.7516 1.9562 29 1 -0.0875 2.4015 2.0627 30 1 2.3806 1.3330 3.5091 31 1 0.8214 1.7687 4.2497 32 1 2.4585 3.5970 4.5416 33 1 1.1267 4.1162 3.4815 34 1 4.7657 4.9948 5.5428 35 1 1.5229 4.3326 0.9858 36 1 3.0501 3.7150 0.3047 37 1 1.7270 -0.1818 2.1400 38 1 1.6376 -1.7365 1.2746 39 1 3.9772 0.2264 1.2236 40 1 3.9419 -1.3465 2.0571 41 1 5.0940 -1.4872 -0.1550 42 1 3.6340 -2.5041 -0.0991 43 1 1.6441 -1.7390 -1.2680 44 1 1.7149 -0.1880 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:20 Heat of formation + Delta-G solvation = -98.854563 kcal Electronic energy + Delta-G solvation = -24346.772828 eV Core-core repulsion = 21070.244874 eV Total energy + Delta-G solvation = -3276.527954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.11573 -39.58156 -38.18221 -36.21607 -34.91870 -33.10757 -32.89416 -31.87169 -27.95690 -27.16886 -26.63301 -25.94583 -23.62947 -23.35208 -22.51462 -20.96152 -19.63099 -18.42799 -17.49173 -17.36574 -17.07685 -16.70801 -16.23904 -16.20343 -15.52472 -15.35104 -15.04435 -14.73794 -14.60383 -14.48398 -13.91934 -13.77198 -13.52525 -13.26563 -13.15194 -12.94819 -12.88592 -12.79237 -12.60622 -12.47350 -12.13005 -11.88398 -11.80659 -11.61306 -11.55258 -11.30670 -11.11045 -10.85926 -10.57019 -10.45609 -10.18470 -9.44296 -8.12733 -6.28109 1.39015 1.40668 1.48119 1.74781 2.14587 2.42109 3.02689 3.13308 3.42024 3.64207 3.79150 3.91139 4.01585 4.09319 4.22212 4.26736 4.31293 4.46712 4.51146 4.53798 4.61247 4.66554 4.73133 4.75355 4.77259 4.85684 4.87623 4.91989 4.94817 5.01137 5.09711 5.19186 5.24363 5.31763 5.34360 5.48476 5.57838 5.59361 5.91739 6.12367 6.33105 6.36437 6.63525 6.80849 7.32329 7.39877 8.90602 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.005145 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.031303 B = 5440.422218 C = 5598.367895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.514 3.486 4 O -0.588 6.588 5 N -0.606 5.606 6 C 0.089 3.911 7 C -0.128 4.128 8 C -0.105 4.105 9 C 0.046 3.954 10 H -0.017 1.017 11 C -0.542 4.542 12 H 0.049 0.951 13 C 0.019 3.981 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.280 1.280 17 H -0.278 1.278 18 H -0.268 1.268 19 C 0.131 3.869 20 C -0.121 4.121 21 C -0.161 4.161 22 C 0.057 3.943 23 O -0.403 6.403 24 C 0.085 3.915 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.021 0.979 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 -15.981 -3.880 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C 0.304 3.696 4 O -0.468 6.468 5 N -0.338 5.338 6 C -0.032 4.032 7 C -0.166 4.166 8 C -0.143 4.143 9 C 0.027 3.973 10 H 0.001 0.999 11 C -0.580 4.580 12 H 0.067 0.933 13 C -0.181 4.181 14 N -0.551 5.551 15 Si 0.780 3.220 16 H -0.205 1.205 17 H -0.203 1.203 18 H -0.192 1.192 19 C 0.008 3.992 20 C -0.158 4.158 21 C -0.198 4.198 22 C -0.020 4.020 23 O -0.322 6.322 24 C 0.008 3.992 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.040 0.960 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.294 -15.689 -4.322 19.256 hybrid contribution 0.982 1.607 0.414 1.928 sum -9.312 -14.081 -3.908 17.329 Atomic orbital electron populations 1.22218 0.89341 1.05697 1.03859 1.21578 0.99680 0.90417 0.99728 1.21192 0.79170 0.88343 0.80943 1.90646 1.41278 1.77664 1.37183 1.48262 1.46826 1.14852 1.23814 1.22621 0.91892 1.02936 0.85733 1.21957 1.00150 0.97196 0.97345 1.21405 0.97104 0.94389 1.01381 1.18819 0.92985 0.94661 0.90856 0.99868 1.21418 1.37965 0.96754 1.01877 0.93311 1.25671 0.95660 1.01257 0.95464 1.69996 1.42567 1.35771 1.06721 0.85674 0.78699 0.80464 0.77202 1.20496 1.20343 1.19245 1.21485 0.96477 0.82498 0.98697 1.22100 0.94747 1.02746 0.96159 1.22201 0.97493 1.00232 0.99913 1.22720 0.99191 0.95332 0.84726 1.88038 1.21340 1.77037 1.45737 1.22572 0.80612 1.00090 0.95925 0.91862 0.87480 0.90058 0.84879 0.90304 0.93460 0.89013 0.91864 0.94600 0.92866 0.92545 0.93808 0.89410 0.86483 0.95998 0.88615 0.89614 0.89782 0.88683 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.10 71.98 0.58 -1.91 16 2 C -0.11 -2.70 0.50 -52.84 -0.03 -2.73 16 3 C 0.51 19.09 5.25 87.66 0.46 19.55 16 4 O -0.59 -27.81 14.82 12.35 0.18 -27.63 16 5 N -0.61 -22.63 2.97 -818.89 -2.43 -25.06 16 6 C 0.09 2.49 4.00 86.36 0.35 2.84 16 7 C -0.13 -4.26 5.75 30.67 0.18 -4.08 16 8 C -0.10 -4.74 4.96 30.62 0.15 -4.59 16 9 C 0.05 2.39 2.25 -11.46 -0.03 2.36 16 10 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 11 C -0.54 -30.91 8.56 25.60 0.22 -30.69 16 12 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 13 C 0.02 1.06 5.30 84.65 0.45 1.50 16 14 N -0.91 -52.68 11.32 21.45 0.24 -52.44 16 15 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.13 6.10 5.64 86.36 0.49 6.58 16 20 C -0.12 -2.49 4.46 30.71 0.14 -2.35 16 21 C -0.16 -4.20 5.88 30.69 0.18 -4.02 16 22 C 0.06 1.38 6.84 72.02 0.49 1.87 16 23 O -0.40 -12.75 9.87 -133.60 -1.32 -14.07 16 24 C 0.08 2.09 5.07 72.01 0.36 2.45 16 25 H 0.06 1.06 8.11 -2.39 -0.02 1.04 16 26 H 0.11 0.94 8.11 -2.39 -0.02 0.92 16 27 H 0.08 1.31 4.70 -2.39 -0.01 1.29 16 28 H 0.13 2.70 2.71 -2.39 -0.01 2.69 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.68 7.60 -2.39 -0.02 1.66 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.04 2.28 7.04 -2.39 -0.02 2.27 16 37 H 0.09 1.87 4.05 -2.38 -0.01 1.86 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.02 0.80 7.39 -2.39 -0.02 0.78 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 2.19 8.02 -2.38 -0.02 2.18 16 Total: -1.00 -74.87 323.62 3.68 -71.19 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.98 Total: 14.80 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.99 Total: -13.19 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.19 Total: -77.50 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.14 Total: -41.70 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -74.87 3.68 -71.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.667 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds