Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47098 * 239.99523 * 3 2 1 5 5 H 1.48505 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47468 * 119.99677 * 3 2 1 7 7 C 1.37879 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99802 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99944 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49748 * 299.92962 * 9 7 2 11 11 C 1.53030 * 109.49997 * 60.00349 * 9 7 2 12 12 C 1.53043 * 109.54071 * 181.35048 * 11 9 7 13 13 C 1.53197 * 109.30915 * 298.62937 * 12 11 9 14 14 N 1.46925 * 108.77368 * 54.63573 * 13 12 11 15 15 C 1.34777 * 120.62850 * 126.36823 * 14 13 12 16 16 O 1.21283 * 119.99973 * 175.91040 * 15 14 13 17 17 C 1.50692 * 120.00019 * 356.18498 * 15 14 13 18 18 O 1.42902 * 109.47390 * 56.99531 * 17 15 14 19 19 C 1.52995 * 109.47535 * 296.99263 * 17 15 14 20 20 C 1.52999 * 109.47802 * 179.97438 * 19 17 15 21 21 C 1.53009 * 109.46677 * 60.00106 * 20 19 17 22 22 C 1.52995 * 109.46919 * 300.00435 * 21 20 19 23 23 C 1.52999 * 109.47802 * 60.00254 * 22 21 20 24 24 C 1.46930 * 118.73831 * 306.64236 * 14 13 12 25 25 H 0.96997 * 119.99805 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46367 * 61.32126 * 11 9 7 27 27 H 1.09006 * 109.46047 * 301.36303 * 11 9 7 28 28 H 1.09001 * 109.49975 * 178.68368 * 12 11 9 29 29 H 1.08995 * 109.49772 * 58.58374 * 12 11 9 30 30 H 1.09001 * 109.58733 * 294.84937 * 13 12 11 31 31 H 1.08999 * 109.69933 * 174.49444 * 13 12 11 32 32 H 0.96704 * 113.99637 * 316.02077 * 18 17 15 33 33 H 1.09005 * 109.47421 * 300.00446 * 19 17 15 34 34 H 1.09003 * 109.46693 * 59.99944 * 19 17 15 35 35 H 1.09005 * 109.47197 * 300.00828 * 20 19 17 36 36 H 1.09001 * 109.47630 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.46973 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.47048 * 60.00176 * 21 20 19 39 39 H 1.09005 * 109.47421 * 299.99562 * 22 21 20 40 40 H 1.09003 * 109.46693 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47630 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.46885 * 59.98909 * 23 22 21 43 43 H 1.09003 * 109.58198 * 173.14615 * 24 14 13 44 44 H 1.08994 * 109.58770 * 293.56800 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5576 0.8907 11 6 0.3715 -2.5812 -1.2491 12 6 -0.4196 -3.8912 -1.2332 13 6 0.5559 -5.0723 -1.2502 14 7 1.4987 -4.9230 -0.1333 15 6 1.6749 -5.9215 0.7547 16 8 2.5092 -5.8157 1.6286 17 6 0.8395 -7.1720 0.6580 18 8 1.0051 -7.7566 -0.6354 19 6 -0.6336 -6.8192 0.8734 20 6 -1.4819 -8.0887 0.7745 21 6 -1.0343 -9.0857 1.8455 22 6 0.4387 -9.4384 1.6300 23 6 1.2870 -8.1690 1.7289 24 6 2.2413 -3.6623 0.0007 25 1 -0.4850 0.8400 -0.0004 26 1 1.0005 -2.5475 -2.1387 27 1 -0.3207 -1.7392 -1.2619 28 1 -1.0632 -3.9383 -2.1116 29 1 -1.0301 -3.9365 -0.3314 30 1 1.1040 -5.0800 -2.1924 31 1 0.0044 -6.0060 -1.1406 32 1 0.9789 -7.1187 -1.3617 33 1 -0.7599 -6.3732 1.8600 34 1 -0.9525 -6.1093 0.1102 35 1 -1.3554 -8.5343 -0.2122 36 1 -2.5313 -7.8374 0.9285 37 1 -1.6384 -9.9903 1.7748 38 1 -1.1607 -8.6401 2.8322 39 1 0.5652 -9.8840 0.6433 40 1 0.7574 -10.1490 2.3927 41 1 2.3365 -8.4202 1.5750 42 1 1.1605 -7.7234 2.7156 43 1 2.7997 -3.6650 0.9369 44 1 2.9296 -3.5528 -0.8373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = -96.721690 kcal Electronic energy + Delta-G solvation = -23957.136808 eV Core-core repulsion = 20680.701342 eV Total energy + Delta-G solvation = -3276.435466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86739 -38.07788 -36.89201 -35.36746 -33.47558 -31.42528 -30.98715 -30.41602 -29.72424 -25.28900 -25.18996 -22.79870 -22.69762 -21.85761 -20.26262 -19.85017 -18.81378 -17.10596 -16.32716 -16.23218 -16.05993 -14.86966 -14.79315 -14.47857 -14.31990 -14.07398 -13.64537 -13.31458 -13.06554 -12.84108 -12.75035 -12.40898 -12.18412 -12.12000 -12.05264 -11.92619 -11.35357 -11.00159 -10.92615 -10.88776 -10.80375 -10.61801 -10.51782 -10.39575 -10.05833 -9.96527 -9.72633 -9.51617 -9.12777 -8.86050 -8.43986 -8.02227 -6.07065 -4.14410 2.80848 3.28430 3.31972 3.33083 3.38708 4.17910 4.38491 4.46636 4.63599 4.71057 4.96440 5.09480 5.16936 5.18496 5.23281 5.38731 5.44066 5.48470 5.55405 5.64165 5.73919 5.90160 5.93567 6.02707 6.05696 6.14613 6.20326 6.22621 6.25506 6.29676 6.38620 6.43950 6.57954 6.70863 6.85463 7.07000 7.23976 7.43180 7.62727 7.80945 7.89470 8.00786 8.30278 8.47640 8.88771 9.50870 10.98475 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.004499 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.442705 B = 6222.502465 C = 6490.092122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.082 3.918 14 N -0.599 5.599 15 C 0.485 3.515 16 O -0.539 6.539 17 C 0.127 3.873 18 O -0.552 6.552 19 C -0.152 4.152 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.090 4.090 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.377 0.623 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -15.441 -1.804 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.041 4.041 14 N -0.332 5.332 15 C 0.272 3.728 16 O -0.416 6.416 17 C 0.084 3.916 18 O -0.363 6.363 19 C -0.190 4.190 20 C -0.148 4.148 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.128 4.128 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.715 -15.780 -1.003 16.242 hybrid contribution 0.341 1.641 -0.430 1.730 sum -3.373 -14.138 -1.433 14.606 Atomic orbital electron populations 1.69855 1.05902 1.26663 1.50340 1.24927 0.94863 0.99093 0.94823 0.86628 0.79593 0.82908 0.78713 1.20231 1.21274 1.20200 1.21024 0.92974 0.90229 1.51217 0.92510 1.18883 0.92982 0.91175 0.94803 0.95329 1.21637 0.99489 0.95284 0.98637 1.22005 0.97513 0.96452 1.01215 1.22261 0.92101 1.00016 0.89711 1.48376 1.41941 1.16110 1.26796 1.21312 0.84238 0.85208 0.82088 1.90663 1.34972 1.80712 1.35267 1.21409 0.94046 0.90767 0.85408 1.86595 1.95743 1.39094 1.14861 1.22421 0.93705 0.98926 1.03934 1.21420 0.98490 0.94997 0.99934 1.21565 0.96305 0.98919 0.99041 1.21478 0.94562 0.96910 1.02274 1.21342 1.00344 0.94399 0.96724 1.21957 0.95196 0.81667 1.01645 0.92872 0.94466 0.88470 0.92184 0.92149 0.91248 0.89797 0.77051 0.90538 0.89924 0.91137 0.91870 0.92076 0.92104 0.91096 0.92022 0.90814 0.90124 0.90279 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.31 55.43 0.63 -23.86 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.74 8.57 -34.44 -0.30 -14.04 16 8 H 0.06 1.50 7.75 -52.48 -0.41 1.09 16 9 C 0.04 0.97 2.24 -91.88 -0.21 0.77 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.42 4.96 -26.69 -0.13 -2.55 16 12 C -0.13 -2.22 5.82 -26.61 -0.15 -2.37 16 13 C 0.08 1.17 4.13 -3.71 -0.02 1.16 16 14 N -0.60 -10.74 2.98 -173.03 -0.52 -11.25 16 15 C 0.49 8.82 6.71 -10.99 -0.07 8.75 16 16 O -0.54 -11.67 15.42 5.56 0.09 -11.58 16 17 C 0.13 1.82 0.66 -91.77 -0.06 1.76 16 18 O -0.55 -7.27 11.49 -35.23 -0.40 -7.67 16 19 C -0.15 -1.93 4.56 -26.73 -0.12 -2.05 16 20 C -0.11 -1.16 5.78 -26.73 -0.15 -1.31 16 21 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 22 C -0.11 -1.25 5.78 -26.73 -0.15 -1.41 16 23 C -0.09 -1.23 4.24 -26.73 -0.11 -1.34 16 24 C 0.12 2.47 5.62 -3.93 -0.02 2.45 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.99 2.98 -51.93 -0.15 0.84 16 32 H 0.38 4.28 5.32 45.56 0.24 4.53 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.04 4.60 -51.93 -0.24 0.80 16 35 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 42 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 43 H 0.08 1.83 7.03 -51.93 -0.37 1.46 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -29.38 325.05 -8.72 -38.11 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.64 Total: 5.45 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.76 Total: -9.92 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.11 Total: -35.11 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.32 Total: -19.25 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.38 -8.72 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.615 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds