Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48501 * 109.47113 * 270.00098 * 3 2 1 5 5 H 1.48495 * 109.47247 * 30.00299 * 3 2 1 6 6 H 1.48501 * 109.47283 * 150.00445 * 3 2 1 7 7 C 1.37881 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00119 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.52719 * 60.08341 * 9 7 2 11 11 C 1.53044 * 109.50082 * 299.99925 * 9 7 2 12 12 C 1.53037 * 109.53967 * 178.68130 * 11 9 7 13 13 C 1.53198 * 109.31147 * 61.36560 * 12 11 9 14 14 N 1.46923 * 108.77789 * 305.36642 * 13 12 11 15 15 C 1.34777 * 120.62948 * 233.58558 * 14 13 12 16 16 O 1.21280 * 119.99890 * 185.74887 * 15 14 13 17 17 C 1.50698 * 120.00135 * 5.75628 * 15 14 13 18 18 O 1.42899 * 109.47059 * 45.35405 * 17 15 14 19 19 C 1.52997 * 109.47472 * 165.35394 * 17 15 14 20 20 C 1.53004 * 109.47372 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.46812 * 300.00217 * 20 19 17 22 22 C 1.52992 * 109.47271 * 60.00108 * 21 20 19 23 23 C 1.52998 * 109.47004 * 285.35622 * 17 15 14 24 24 C 1.46927 * 118.74021 * 53.85361 * 14 13 12 25 25 H 0.97005 * 120.00177 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.45993 * 58.66240 * 11 9 7 27 27 H 1.09003 * 109.44827 * 298.69793 * 11 9 7 28 28 H 1.09000 * 109.50296 * 301.41778 * 12 11 9 29 29 H 1.09006 * 109.49692 * 181.31466 * 12 11 9 30 30 H 1.08994 * 109.58739 * 185.57329 * 13 12 11 31 31 H 1.09003 * 109.69955 * 65.21828 * 13 12 11 32 32 H 0.96703 * 114.00256 * 57.66940 * 18 17 15 33 33 H 1.09000 * 109.47048 * 299.99798 * 19 17 15 34 34 H 1.09001 * 109.47045 * 59.99528 * 19 17 15 35 35 H 1.09001 * 109.46673 * 180.02562 * 20 19 17 36 36 H 1.08998 * 109.46442 * 60.00073 * 20 19 17 37 37 H 1.09001 * 109.46865 * 299.99882 * 21 20 19 38 38 H 1.09001 * 109.46681 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46990 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47361 * 60.00077 * 22 21 20 41 41 H 1.08998 * 109.47135 * 300.00041 * 23 17 15 42 42 H 1.09005 * 109.47513 * 59.99818 * 23 17 15 43 43 H 1.09004 * 109.58075 * 65.93226 * 24 14 13 44 44 H 1.08991 * 109.58954 * 186.35367 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8761 -0.6819 0.8893 11 6 4.0218 -0.4725 -1.2505 12 6 5.5519 -0.4432 -1.2355 13 6 6.0863 -1.8788 -1.2541 14 7 5.4860 -2.6214 -0.1374 15 6 6.2629 -3.2750 0.7490 16 8 5.7551 -3.9693 1.6040 17 6 7.7624 -3.1432 0.6778 18 8 8.1118 -1.7690 0.5004 19 6 8.3824 -3.6636 1.9761 20 6 9.9049 -3.5303 1.9035 21 6 10.4326 -4.3477 0.7227 22 6 9.8127 -3.8273 -0.5755 23 6 8.2907 -3.9602 -0.5030 24 6 4.0225 -2.6428 -0.0089 25 1 -0.4850 0.8401 0.0004 26 1 3.6392 0.5480 -1.2622 27 1 3.6774 -0.9997 -2.1403 28 1 5.8973 0.0619 -0.3335 29 1 5.9141 0.0913 -2.1138 30 1 7.1706 -1.8665 -1.1438 31 1 5.8202 -2.3578 -2.1964 32 1 7.7776 -1.1853 1.1952 33 1 8.0061 -3.0814 2.8172 34 1 8.1158 -4.7118 2.1114 35 1 10.3465 -3.9014 2.8283 36 1 10.1717 -2.4821 1.7680 37 1 10.1657 -5.3958 0.8583 38 1 11.5173 -4.2531 0.6713 39 1 10.1890 -4.4094 -1.4167 40 1 10.0796 -2.7792 -0.7111 41 1 8.0241 -5.0084 -0.3678 42 1 7.8490 -3.5894 -1.4281 43 1 3.5896 -3.1814 -0.8519 44 1 3.7448 -3.1348 0.9232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -98.869842 kcal Electronic energy + Delta-G solvation = -23992.892101 eV Core-core repulsion = 20716.363485 eV Total energy + Delta-G solvation = -3276.528617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76377 -38.28440 -36.92360 -35.34502 -33.44099 -31.78628 -31.04454 -30.55155 -29.93281 -25.58153 -25.03118 -22.97812 -22.85606 -21.62627 -20.32090 -19.85737 -18.74765 -17.49734 -16.73791 -16.26314 -15.63611 -15.43002 -14.90154 -14.65073 -14.29414 -13.95702 -13.67161 -13.54992 -13.18668 -13.12782 -12.75015 -12.52270 -12.45850 -12.34559 -12.14124 -12.03642 -11.54113 -11.17971 -11.15927 -11.01097 -10.74544 -10.65996 -10.60254 -10.31523 -10.18104 -10.04282 -9.83295 -9.50961 -9.14244 -8.86276 -8.58293 -8.08545 -6.11318 -4.11498 2.77170 3.22914 3.32535 3.34290 3.36683 4.00203 4.36809 4.41641 4.58531 4.62274 4.91265 5.04353 5.06924 5.18372 5.26150 5.36337 5.38693 5.40461 5.45973 5.60931 5.69028 5.79231 5.85228 5.92531 5.94491 5.98664 6.03964 6.06766 6.11156 6.18048 6.19258 6.30216 6.41931 6.51665 6.68452 6.73661 6.87648 7.10924 7.36074 7.44340 7.70926 7.84319 8.42376 8.48066 8.91854 9.50182 11.01723 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.004810 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.946445 B = 5819.613967 C = 6040.715423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.008 3.992 10 H 0.029 0.971 11 C -0.124 4.124 12 C -0.133 4.133 13 C 0.094 3.906 14 N -0.595 5.595 15 C 0.483 3.517 16 O -0.544 6.544 17 C 0.126 3.874 18 O -0.541 6.541 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.108 4.108 24 C 0.124 3.876 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.381 0.619 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.348 -4.740 -1.496 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.093 0.907 9 C -0.012 4.012 10 H 0.047 0.953 11 C -0.161 4.161 12 C -0.171 4.171 13 C -0.029 4.029 14 N -0.327 5.327 15 C 0.269 3.731 16 O -0.422 6.422 17 C 0.082 3.918 18 O -0.348 6.348 19 C -0.166 4.166 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.145 4.145 24 C 0.003 3.997 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.183 -5.238 -1.580 21.878 hybrid contribution -0.179 1.291 0.352 1.350 sum 21.004 -3.948 -1.227 21.407 Atomic orbital electron populations 1.69893 1.06283 1.27007 1.50479 1.24982 0.94680 0.99015 0.94334 0.86808 0.79855 0.83513 0.77793 1.20578 1.22548 1.19162 1.20921 0.88373 0.94722 1.51370 0.90654 1.19519 0.96780 0.91239 0.93626 0.95329 1.22006 0.92462 1.00549 1.01125 1.21936 0.98058 0.95725 1.01416 1.22166 1.00021 0.92076 0.88613 1.48350 1.08118 1.49295 1.26891 1.21328 0.89822 0.80404 0.81590 1.90682 1.75372 1.39548 1.36628 1.21346 0.89637 0.83539 0.97299 1.86463 1.79147 1.16683 1.52523 1.21937 0.95504 1.03130 0.95986 1.21473 0.94642 1.01011 0.98056 1.21555 0.99731 0.99590 0.94925 1.21430 0.93977 1.02260 0.97352 1.21650 0.96899 0.99342 0.96655 1.21900 0.76093 0.99430 1.02292 0.92586 0.93329 0.92081 0.92192 0.91970 0.87149 0.92381 0.77035 0.91282 0.90156 0.91991 0.91243 0.92143 0.92036 0.91919 0.90788 0.90367 0.90441 0.91982 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 21.77 24.39 -169.99 -4.15 17.62 16 4 H -0.28 -6.59 6.86 56.52 0.39 -6.20 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 7 C -0.52 -14.32 9.15 -34.44 -0.31 -14.63 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.01 0.18 1.85 -91.43 -0.17 0.01 16 10 H 0.03 0.70 7.21 -51.93 -0.37 0.33 16 11 C -0.12 -2.54 4.65 -26.69 -0.12 -2.67 16 12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.09 1.36 4.94 -3.71 -0.02 1.34 16 14 N -0.59 -10.24 2.97 -172.50 -0.51 -10.75 16 15 C 0.48 8.04 6.63 -10.99 -0.07 7.97 16 16 O -0.54 -11.02 15.43 5.56 0.09 -10.93 16 17 C 0.13 1.54 0.54 -91.78 -0.05 1.49 16 18 O -0.54 -6.00 8.89 -35.23 -0.31 -6.31 16 19 C -0.13 -1.46 4.33 -26.73 -0.12 -1.57 16 20 C -0.11 -1.04 5.78 -26.73 -0.15 -1.19 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 22 C -0.11 -0.99 5.78 -26.76 -0.15 -1.15 16 23 C -0.11 -1.16 4.64 -26.76 -0.12 -1.28 16 24 C 0.12 2.57 5.67 -3.48 -0.02 2.55 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.05 1.07 3.25 -51.93 -0.17 0.90 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 1.39 3.65 -51.93 -0.19 1.20 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.38 3.71 9.03 45.56 0.41 4.12 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.83 6.10 -51.93 -0.32 0.51 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.08 1.89 7.04 -51.93 -0.37 1.52 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -31.46 322.97 -7.44 -38.90 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.46 Total: 3.82 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.73 Total: -10.64 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.26 Total: -37.34 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.23 Total: -17.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.62 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.46 -7.44 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.968 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds