Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99773 * 2 1 4 4 H 1.48499 * 109.47332 * 264.79168 * 3 2 1 5 5 H 1.48500 * 109.47006 * 24.78989 * 3 2 1 6 6 H 1.48497 * 109.47256 * 144.78924 * 3 2 1 7 7 C 1.37873 * 120.00553 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99667 * 4.94777 * 7 2 1 9 9 C 1.50700 * 120.00110 * 184.95549 * 7 2 1 10 10 H 1.08996 * 109.49866 * 335.12716 * 9 7 2 11 11 C 1.53048 * 109.52047 * 215.04708 * 9 7 2 12 12 C 1.53034 * 109.53729 * 178.66439 * 11 9 7 13 13 C 1.53192 * 109.31240 * 61.36582 * 12 11 9 14 14 N 1.46925 * 108.77883 * 305.36781 * 13 12 11 15 15 C 1.34773 * 120.62983 * 233.62860 * 14 13 12 16 16 O 1.21285 * 119.99966 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00084 * 359.97438 * 15 14 13 18 18 O 1.42903 * 109.47462 * 179.97438 * 17 15 14 19 19 C 1.42897 * 114.00465 * 180.02562 * 18 17 15 20 20 C 1.54267 * 110.03124 * 267.91224 * 19 18 17 21 21 C 1.54969 * 104.15826 * 217.13442 * 20 19 18 22 22 C 1.54895 * 102.77743 * 37.88559 * 21 20 19 23 23 C 1.53866 * 110.03511 * 150.69007 * 19 18 17 24 24 C 1.46926 * 118.73872 * 53.60036 * 14 13 12 25 25 H 0.96996 * 120.00334 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46287 * 298.69167 * 11 9 7 27 27 H 1.09002 * 109.45870 * 58.66160 * 11 9 7 28 28 H 1.08999 * 109.50040 * 301.41984 * 12 11 9 29 29 H 1.09003 * 109.50125 * 181.31932 * 12 11 9 30 30 H 1.09001 * 109.59111 * 185.57264 * 13 12 11 31 31 H 1.09009 * 109.58271 * 65.15120 * 13 12 11 32 32 H 1.09001 * 109.47202 * 300.00012 * 17 15 14 33 33 H 1.09004 * 109.47299 * 59.99827 * 17 15 14 34 34 H 1.09005 * 110.01627 * 29.29614 * 19 18 17 35 35 H 1.09000 * 110.48580 * 335.77678 * 20 19 18 36 36 H 1.08997 * 110.49046 * 98.42370 * 20 19 18 37 37 H 1.09001 * 110.71820 * 279.57732 * 21 20 19 38 38 H 1.09000 * 110.92563 * 156.29026 * 21 20 19 39 39 H 1.08998 * 110.48648 * 203.41008 * 22 21 20 40 40 H 1.08997 * 110.59758 * 80.81178 * 22 21 20 41 41 H 1.09003 * 110.03556 * 238.57377 * 23 19 18 42 42 H 1.09004 * 110.03226 * 359.97438 * 23 19 18 43 43 H 1.09005 * 109.58051 * 66.18501 * 24 14 13 44 44 H 1.08998 * 109.58896 * 186.46423 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6067 1.9830 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4873 1.4746 0.8072 7 6 2.0046 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0816 9 6 3.5074 -1.1963 0.1122 10 1 3.9010 -0.2468 -0.2504 11 6 4.0813 -2.3408 -0.7263 12 6 5.6091 -2.3232 -0.6388 13 6 6.0355 -2.5301 0.8180 14 7 5.3715 -1.5200 1.6532 15 6 6.0896 -0.7269 2.4728 16 8 5.5298 0.1035 3.1569 17 6 7.5881 -0.8719 2.5392 18 8 8.1173 0.0730 3.4716 19 6 9.5385 0.0194 3.6103 20 6 9.9215 -0.9332 4.7617 21 6 11.1445 -0.2520 5.4264 22 6 10.7796 1.2517 5.3552 23 6 10.0841 1.4078 3.9870 24 6 3.9100 -1.3905 1.5774 25 1 -0.4850 0.8400 0.0004 26 1 3.7068 -3.2918 -0.3476 27 1 3.7759 -2.2182 -1.7655 28 1 5.9829 -1.3630 -0.9943 29 1 6.0181 -3.1240 -1.2549 30 1 7.1167 -2.4200 0.9014 31 1 5.7412 -3.5269 1.1467 32 1 7.8416 -1.8818 2.8615 33 1 8.0151 -0.6872 1.5534 34 1 9.9918 -0.3198 2.6788 35 1 9.1005 -1.0209 5.4733 36 1 10.1953 -1.9132 4.3710 37 1 12.0539 -0.4559 4.8611 38 1 11.2544 -0.5741 6.4618 39 1 11.6797 1.8651 5.3977 40 1 10.0979 1.5195 6.1624 41 1 10.8028 1.7423 3.2388 42 1 9.2649 2.1228 4.0637 43 1 3.4424 -2.2944 1.9682 44 1 3.5884 -0.5300 2.1640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -100.559136 kcal Electronic energy + Delta-G solvation = -22727.116604 eV Core-core repulsion = 19450.514734 eV Total energy + Delta-G solvation = -3276.601870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88410 -38.87377 -36.96805 -35.77068 -33.41569 -31.90334 -30.65839 -29.07129 -28.73937 -27.09589 -25.19846 -24.16427 -21.89029 -21.00433 -20.53861 -19.88042 -18.57513 -17.30443 -16.97933 -16.59729 -15.93325 -15.58424 -15.35631 -14.73745 -14.26890 -13.95303 -13.84461 -13.57800 -13.49314 -13.18719 -12.74302 -12.51338 -12.32336 -12.22753 -12.02119 -11.64458 -11.36572 -11.34097 -11.27616 -11.07971 -10.87040 -10.74628 -10.72048 -10.57055 -10.07406 -9.70637 -9.67531 -9.58976 -9.25863 -9.05512 -8.57318 -8.05828 -6.11261 -4.12420 2.96043 3.02927 3.32626 3.42625 3.51699 3.93151 4.32142 4.34695 4.43832 4.66698 4.78217 4.94461 5.03275 5.12652 5.15901 5.20710 5.21262 5.27206 5.33120 5.39921 5.44595 5.50348 5.61340 5.65266 5.76141 5.79989 5.89819 5.96907 5.98722 6.07872 6.13061 6.26908 6.40222 6.60521 6.66221 6.78083 6.88169 7.12547 7.25979 7.35782 7.72923 7.87590 8.46822 8.60946 8.93668 9.52262 11.01151 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.004038 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.581505 B = 6932.433934 C = 7600.526977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.034 0.966 11 C -0.105 4.105 12 C -0.138 4.138 13 C 0.109 3.891 14 N -0.609 5.609 15 C 0.507 3.493 16 O -0.525 6.525 17 C 0.046 3.954 18 O -0.354 6.354 19 C 0.081 3.919 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.125 4.125 24 C 0.115 3.885 25 H 0.265 0.735 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.296 -3.855 5.012 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.052 0.948 11 C -0.143 4.143 12 C -0.176 4.176 13 C -0.015 4.015 14 N -0.344 5.344 15 C 0.293 3.707 16 O -0.401 6.401 17 C -0.034 4.034 18 O -0.272 6.272 19 C 0.023 3.977 20 C -0.187 4.187 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.005 4.005 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.691 -3.149 5.496 23.559 hybrid contribution 0.527 0.605 -0.288 0.853 sum 23.219 -2.544 5.208 23.931 Atomic orbital electron populations 1.69896 1.06357 1.27221 1.49755 1.25069 0.94689 0.99059 0.93845 0.86928 0.80853 0.83665 0.78736 1.20257 1.21429 1.18314 1.20883 0.88635 0.94676 1.51119 0.90646 1.19471 0.96904 0.94768 0.90259 0.94758 1.21578 0.91605 1.00066 1.01007 1.22017 0.99196 1.01541 0.94893 1.21704 0.96201 0.91974 0.91573 1.48468 1.09331 1.35682 1.40923 1.20157 0.88364 0.81693 0.80523 1.90711 1.72028 1.34684 1.42654 1.22326 0.93257 0.93904 0.93941 1.88114 1.20232 1.57145 1.61726 1.22871 0.81237 0.96044 0.97548 1.22944 0.98836 0.98383 0.98538 1.22436 0.97484 0.95394 1.00705 1.22335 1.00082 0.96328 0.97314 1.22224 1.00229 0.96462 0.97311 1.22444 0.74886 1.02108 1.01084 0.92492 0.92676 0.92133 0.92126 0.91650 0.91165 0.91376 0.90779 0.90724 0.91880 0.90198 0.91539 0.91496 0.91349 0.91534 0.91241 0.91032 0.90005 0.92013 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 22.42 26.99 -169.99 -4.59 17.83 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.26 -6.79 6.82 56.52 0.39 -6.40 16 7 C -0.52 -14.14 8.87 -34.44 -0.31 -14.45 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 9 C 0.01 0.13 1.92 -91.65 -0.18 -0.05 16 10 H 0.03 0.83 5.29 -51.93 -0.27 0.56 16 11 C -0.10 -1.94 5.15 -26.69 -0.14 -2.08 16 12 C -0.14 -1.97 6.08 -26.61 -0.16 -2.13 16 13 C 0.11 1.45 6.34 -3.71 -0.02 1.43 16 14 N -0.61 -11.05 2.97 -172.77 -0.51 -11.57 16 15 C 0.51 9.59 7.77 -10.99 -0.09 9.50 16 16 O -0.53 -12.55 15.91 -14.36 -0.23 -12.77 16 17 C 0.05 0.63 4.61 36.00 0.17 0.79 16 18 O -0.35 -5.36 9.43 -55.14 -0.52 -5.88 16 19 C 0.08 0.87 3.38 -25.62 -0.09 0.79 16 20 C -0.15 -1.38 6.56 -25.03 -0.16 -1.55 16 21 C -0.12 -0.93 6.91 -24.69 -0.17 -1.10 16 22 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 23 C -0.12 -1.23 6.61 -25.62 -0.17 -1.40 16 24 C 0.12 2.53 5.70 -3.71 -0.02 2.51 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 31 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 33 H 0.07 0.85 7.65 -51.93 -0.40 0.46 16 34 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 35 H 0.08 0.86 8.08 -51.93 -0.42 0.45 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 2.07 7.00 -51.93 -0.36 1.71 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -33.70 344.22 -9.13 -42.84 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.64 Total: -2.24 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.60 Total: -6.81 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.26 Total: -38.15 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.75 Total: -18.65 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.59 Total: 17.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.70 -9.13 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.722 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds