Wall clock time and date at job start Tue Mar 31 2020 07:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.54279 * 2 1 4 4 O 1.21281 * 120.00195 * 114.50371 * 3 2 1 5 5 N 1.34777 * 120.00256 * 294.50653 * 3 2 1 6 6 C 1.47203 * 120.81416 * 5.53033 * 5 3 2 7 7 C 1.53190 * 108.85562 * 126.33690 * 6 5 3 8 8 C 1.53042 * 109.31350 * 54.65221 * 7 6 5 9 9 C 1.53041 * 109.53560 * 298.63667 * 8 7 6 10 10 H 1.08995 * 109.49700 * 301.40941 * 9 8 7 11 11 C 1.50707 * 109.52517 * 181.33130 * 9 8 7 12 12 H 1.07999 * 119.99667 * 275.31216 * 11 9 8 13 13 C 1.37871 * 119.99903 * 95.30027 * 11 9 8 14 14 N 1.31523 * 119.99997 * 185.47133 * 13 11 9 15 15 Si 1.86799 * 120.00194 * 5.47154 * 13 11 9 16 16 H 1.48504 * 109.46927 * 85.08957 * 15 13 11 17 17 H 1.48502 * 109.47153 * 205.08304 * 15 13 11 18 18 H 1.48496 * 109.47247 * 325.08766 * 15 13 11 19 19 C 1.46925 * 120.63226 * 185.38814 * 5 3 2 20 20 C 1.53174 * 109.54556 * 120.17953 * 2 1 3 21 21 C 1.53276 * 109.06596 * 176.85259 * 20 2 1 22 22 O 1.42906 * 109.46204 * 302.44177 * 21 20 2 23 23 C 1.42907 * 114.09300 * 61.15969 * 22 21 20 24 24 C 1.53094 * 109.41430 * 298.84169 * 23 22 21 25 25 H 1.09000 * 109.47376 * 44.72437 * 1 2 3 26 26 H 1.09001 * 109.47041 * 164.72366 * 1 2 3 27 27 H 1.08993 * 109.47152 * 284.72073 * 1 2 3 28 28 H 1.08994 * 109.53425 * 6.53425 * 6 5 3 29 29 H 1.09002 * 109.55997 * 246.15746 * 6 5 3 30 30 H 1.09002 * 109.49779 * 294.69824 * 7 6 5 31 31 H 1.08997 * 109.52449 * 174.61835 * 7 6 5 32 32 H 1.08991 * 109.46290 * 178.61646 * 8 7 6 33 33 H 1.09000 * 109.44705 * 58.64757 * 8 7 6 34 34 H 0.97001 * 120.00029 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.59170 * 113.82016 * 19 5 3 36 36 H 1.09002 * 109.59004 * 353.53503 * 19 5 3 37 37 H 1.08994 * 109.52309 * 296.84607 * 20 2 1 38 38 H 1.09007 * 109.51929 * 57.02835 * 20 2 1 39 39 H 1.09006 * 109.45864 * 182.45154 * 21 20 2 40 40 H 1.08998 * 109.46210 * 62.44048 * 21 20 2 41 41 H 1.08994 * 109.48109 * 178.86075 * 23 22 21 42 42 H 1.09005 * 109.48382 * 58.82394 * 23 22 21 43 43 H 1.09000 * 109.52161 * 297.70416 * 24 23 22 44 44 H 1.09003 * 109.52153 * 177.51716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4201 0.0000 4 8 2.6475 1.8459 0.9557 5 7 1.8033 2.2172 -1.0620 6 6 0.9592 1.7606 -2.1782 7 6 -0.1443 2.7953 -2.4199 8 6 0.4903 4.1711 -2.6356 9 6 1.2680 4.5781 -1.3819 10 1 0.5937 4.5973 -0.5258 11 6 1.8656 5.9471 -1.5822 12 1 2.8154 6.0532 -2.0853 13 6 1.1997 7.0638 -1.1236 14 7 1.6660 8.2639 -1.3919 15 14 -0.3648 6.8723 -0.1211 16 1 -0.0153 6.6711 1.3082 17 1 -1.1947 8.0959 -0.2601 18 1 -1.1281 5.6978 -0.6141 19 6 2.3875 3.5636 -1.1285 20 6 2.0425 -0.7256 1.2478 21 6 3.5731 -0.7883 1.1974 22 8 3.9834 -1.4477 -0.0023 23 6 3.5714 -0.7876 -1.2009 24 6 2.0424 -0.7256 -1.2479 25 1 -0.3634 0.7301 -0.7231 26 1 -0.3633 -0.9914 -0.2708 27 1 -0.3633 0.2611 0.9939 28 1 0.5103 0.7998 -1.9264 29 1 1.5670 1.6578 -3.0772 30 1 -0.8054 2.8312 -1.5540 31 1 -0.7177 2.5165 -3.3040 32 1 -0.2914 4.9048 -2.8322 33 1 1.1701 4.1278 -3.4865 34 1 1.1977 9.0496 -1.0689 35 1 3.1118 3.6080 -1.9418 36 1 2.8827 3.7941 -0.1852 37 1 1.7271 -0.1839 2.1395 38 1 1.6374 -1.7374 1.2729 39 1 3.9425 -1.3417 2.0608 40 1 3.9787 0.2233 1.2130 41 1 3.9394 -1.3404 -2.0652 42 1 3.9769 0.2240 -1.2166 43 1 1.6374 -1.7372 -1.2731 44 1 1.7271 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:56 Heat of formation + Delta-G solvation = -81.572715 kcal Electronic energy + Delta-G solvation = -24261.381649 eV Core-core repulsion = 20985.603092 eV Total energy + Delta-G solvation = -3275.778557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10122 -38.44560 -36.90687 -35.14910 -33.28038 -31.89481 -31.05424 -30.50251 -28.52559 -25.53029 -25.34809 -23.67796 -23.09454 -21.77688 -21.50790 -19.42942 -18.40251 -16.97393 -16.38970 -16.24436 -16.02201 -15.46971 -15.09636 -14.70945 -14.37085 -14.12205 -13.95565 -13.61100 -13.21914 -12.84609 -12.82960 -12.63353 -12.40227 -12.29645 -12.12072 -11.94876 -11.74971 -11.44837 -11.17069 -11.05969 -10.79498 -10.57551 -10.47666 -10.38073 -10.02943 -9.88549 -9.65514 -9.50696 -9.22581 -8.97898 -8.58102 -8.10310 -6.13606 -4.13570 2.88016 3.25959 3.34211 3.35622 3.35858 3.86874 4.37680 4.39404 4.45561 4.68824 4.89570 4.91748 5.08290 5.16969 5.19958 5.26014 5.36106 5.42282 5.48413 5.53231 5.57046 5.63424 5.69643 5.78835 5.81216 5.90384 5.95947 5.99550 6.06035 6.09427 6.13053 6.22486 6.36506 6.54917 6.66528 6.79396 6.86452 7.18288 7.22451 7.36381 7.69942 7.82492 8.43108 8.50684 8.90871 9.49494 10.99374 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.005311 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.756593 B = 5270.893174 C = 5398.345807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 C 0.518 3.482 4 O -0.543 6.543 5 N -0.604 5.604 6 C 0.089 3.911 7 C -0.141 4.141 8 C -0.111 4.111 9 C 0.006 3.994 10 H 0.034 0.966 11 C -0.513 4.513 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.897 5.897 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.266 1.266 19 C 0.121 3.879 20 C -0.126 4.126 21 C 0.051 3.949 22 O -0.386 6.386 23 C 0.059 3.941 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -19.675 -0.688 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 C 0.306 3.694 4 O -0.421 6.421 5 N -0.336 5.336 6 C -0.033 4.033 7 C -0.179 4.179 8 C -0.149 4.149 9 C -0.013 4.013 10 H 0.052 0.948 11 C -0.551 4.551 12 H 0.093 0.907 13 C -0.127 4.127 14 N -0.534 5.534 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.191 1.191 19 C 0.000 4.000 20 C -0.164 4.164 21 C -0.026 4.026 22 O -0.305 6.305 23 C -0.018 4.018 24 C -0.195 4.195 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.615 -19.389 -0.162 19.566 hybrid contribution -1.170 0.419 0.445 1.320 sum -3.785 -18.971 0.284 19.347 Atomic orbital electron populations 1.22173 0.92482 1.03019 1.03518 1.20843 0.97324 0.92960 0.97508 1.20366 0.79795 0.86972 0.82298 1.90638 1.42142 1.75578 1.33750 1.48394 1.49273 1.16792 1.19167 1.22329 0.92902 0.98391 0.89699 1.22062 0.97294 0.97438 1.01120 1.21832 0.99377 0.93227 1.00510 1.19453 0.93444 0.94621 0.93816 0.94793 1.20859 1.07762 0.88103 1.38398 0.90732 1.25027 0.97122 0.95149 0.95451 1.69903 1.40359 0.97720 1.45454 0.86867 0.83964 0.77404 0.81335 1.20161 1.21583 1.19059 1.21981 0.96875 0.78709 1.02391 1.22040 0.97111 1.00141 0.97105 1.22817 0.93732 0.99099 0.86930 1.87873 1.77239 1.51470 1.13894 1.22551 0.93344 0.97910 0.87958 1.22663 0.97498 1.01612 0.97735 0.90489 0.91416 0.91756 0.88649 0.91590 0.92303 0.91766 0.92577 0.92620 0.92560 0.92254 0.89669 0.90073 0.90850 0.89193 0.90841 0.88772 0.93084 0.90118 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.09 37.16 0.30 -1.34 16 2 C -0.08 -1.03 0.50 -155.48 -0.08 -1.11 16 3 C 0.52 8.64 5.05 -10.99 -0.06 8.58 16 4 O -0.54 -10.97 13.48 5.56 0.07 -10.90 16 5 N -0.60 -10.11 2.97 -172.55 -0.51 -10.62 16 6 C 0.09 1.18 3.84 -3.56 -0.01 1.16 16 7 C -0.14 -2.09 5.89 -26.61 -0.16 -2.24 16 8 C -0.11 -2.14 5.15 -26.69 -0.14 -2.28 16 9 C 0.01 0.14 1.93 -91.65 -0.18 -0.03 16 10 H 0.03 0.82 5.25 -51.93 -0.27 0.54 16 11 C -0.51 -13.94 8.86 -34.44 -0.31 -14.25 16 12 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 15 Si 0.88 21.56 27.02 -169.99 -4.59 16.97 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.20 6.78 56.52 0.38 -5.82 16 19 C 0.12 2.47 5.70 -3.71 -0.02 2.45 16 20 C -0.13 -1.53 4.52 -26.50 -0.12 -1.65 16 21 C 0.05 0.67 6.56 37.30 0.24 0.91 16 22 O -0.39 -5.23 10.77 -35.23 -0.38 -5.61 16 23 C 0.06 0.70 6.62 37.21 0.25 0.95 16 24 C -0.16 -1.64 4.53 -26.59 -0.12 -1.77 16 25 H 0.08 0.84 4.72 -51.93 -0.24 0.60 16 26 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 27 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 28 H 0.10 1.01 2.87 -51.93 -0.15 0.86 16 29 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 30 H 0.06 0.92 7.93 -51.93 -0.41 0.50 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.93 7.00 -51.93 -0.36 1.57 16 37 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.16 6.02 -51.93 -0.31 0.85 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 43 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 44 H 0.09 0.87 4.57 -51.93 -0.24 0.63 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -31.40 321.13 -7.28 -38.69 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.99 Total: 1.46 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.49 Total: -8.59 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.26 Total: -36.86 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.30 Total: -16.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.59 Total: 16.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.40 -7.28 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.887 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds