Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47011 * 300.00314 * 3 2 1 6 6 H 1.48500 * 109.46898 * 59.99961 * 3 2 1 7 7 C 1.37871 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46796 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47023 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47227 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00100 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00083 * 180.02562 * 13 12 11 16 16 C 1.45736 * 117.56720 * 359.97438 * 15 13 12 17 17 C 1.53253 * 109.32394 * 155.81048 * 16 15 13 18 18 O 1.43194 * 107.37513 * 51.81732 * 17 16 15 19 19 C 1.42335 * 113.95208 * 289.70555 * 18 17 16 20 20 H 1.08998 * 109.51461 * 291.34419 * 19 18 17 21 21 C 1.53838 * 109.08921 * 171.50828 * 19 18 17 22 22 C 1.53730 * 106.95222 * 235.14978 * 21 19 18 23 23 C 1.54056 * 105.85265 * 19.15105 * 22 21 19 24 24 C 1.44297 * 117.56826 * 179.74052 * 15 13 12 25 25 H 1.09007 * 108.08543 * 308.57160 * 24 15 13 26 26 H 0.96999 * 119.99798 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46875 * 59.99391 * 9 7 2 28 28 H 1.09000 * 109.46883 * 300.00273 * 9 7 2 29 29 H 1.08999 * 109.47095 * 60.00511 * 10 9 7 30 30 H 1.09002 * 109.47410 * 299.99510 * 10 9 7 31 31 H 1.08999 * 109.46944 * 60.00342 * 11 10 9 32 32 H 1.09003 * 109.47142 * 299.99618 * 11 10 9 33 33 H 1.09004 * 109.46764 * 59.99689 * 12 11 10 34 34 H 1.09000 * 109.47236 * 300.00460 * 12 11 10 35 35 H 1.09004 * 109.49568 * 275.76496 * 16 15 13 36 36 H 1.08998 * 109.49030 * 35.85359 * 16 15 13 37 37 H 1.08995 * 109.87705 * 171.28369 * 17 16 15 38 38 H 1.09001 * 109.87318 * 292.35519 * 17 16 15 39 39 H 1.09011 * 109.96532 * 354.52150 * 21 19 18 40 40 H 1.08999 * 109.96792 * 115.77481 * 21 19 18 41 41 H 1.09005 * 110.17763 * 138.25128 * 22 21 19 42 42 H 1.09001 * 110.17563 * 259.97814 * 22 21 19 43 43 H 1.09009 * 110.33752 * 90.71945 * 23 22 21 44 44 H 1.08995 * 110.34185 * 212.96799 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4747 -6.1500 -0.0008 13 6 1.7213 -7.4550 -0.0008 14 8 0.5085 -7.4551 -0.0008 15 7 2.3952 -8.6222 -0.0008 16 6 3.8512 -8.5603 -0.0013 17 6 4.4142 -9.8567 0.5913 18 8 3.8039 -10.9470 -0.1082 19 6 2.4223 -11.1215 0.1862 20 1 2.3096 -11.4637 1.2149 21 6 1.8324 -12.1707 -0.7718 22 6 0.6313 -11.5140 -1.4713 23 6 0.8233 -9.9951 -1.2997 24 6 1.6214 -9.8401 0.0050 25 1 0.8978 -9.7774 0.8179 26 1 -0.4850 0.8401 0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6042 0.8906 30 1 2.8721 -3.6043 -0.8895 31 1 0.8541 -5.0445 -0.8904 32 1 0.8535 -5.0451 0.8897 33 1 3.1014 -6.0926 0.8893 34 1 3.1014 -6.0917 -0.8907 35 1 4.2099 -8.4420 -1.0238 36 1 4.1794 -7.7127 0.6002 37 1 5.4951 -9.8876 0.4551 38 1 4.1715 -9.9150 1.6524 39 1 2.5795 -12.4622 -1.5102 40 1 1.5035 -13.0447 -0.2097 41 1 0.6239 -11.7748 -2.5297 42 1 -0.2985 -11.8322 -0.9998 43 1 1.3868 -9.5872 -2.1390 44 1 -0.1431 -9.4983 -1.2141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600364403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -104.496215 kcal Electronic energy + Delta-G solvation = -22323.930169 eV Core-core repulsion = 19047.157575 eV Total energy + Delta-G solvation = -3276.772595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -41.11669 -38.85203 -36.43081 -35.16388 -34.87235 -32.61859 -30.29788 -29.89602 -28.55535 -27.52737 -25.41734 -23.55746 -22.57279 -21.11609 -20.48275 -19.98116 -18.79508 -17.55729 -17.36423 -16.25558 -16.17557 -16.02472 -15.26878 -15.00549 -14.71746 -14.45523 -14.39320 -14.11329 -13.45459 -13.19377 -12.66086 -12.52331 -12.23832 -12.21446 -11.78603 -11.63585 -11.56865 -11.54999 -11.44146 -10.99064 -10.94220 -10.77072 -10.52844 -10.47846 -10.40233 -10.21234 -9.64199 -9.60858 -9.21117 -8.96441 -8.77819 -8.30328 -5.94887 -3.97371 2.65026 2.71383 3.33328 3.34929 3.40495 3.44424 4.06979 4.23387 4.40288 4.48830 4.51311 4.69245 4.78946 4.86737 4.92852 5.12890 5.14616 5.19967 5.26415 5.31675 5.33238 5.39238 5.40908 5.44387 5.59656 5.66765 5.74396 5.84356 6.00218 6.04984 6.13775 6.29394 6.42808 6.55529 6.80099 6.84241 7.01350 7.16422 7.23289 7.74908 7.90657 8.06636 8.19102 8.48431 9.10609 9.66357 11.16495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038308 B = 0.002798 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.746638 B =10004.690343 C =10553.695682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.508 3.492 14 O -0.527 6.527 15 N -0.607 5.607 16 C 0.076 3.924 17 C 0.049 3.951 18 O -0.372 6.372 19 C 0.090 3.910 20 H 0.065 0.935 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.129 4.129 24 C 0.119 3.881 25 H 0.078 0.922 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.032 -26.117 0.100 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.297 3.703 14 O -0.402 6.402 15 N -0.342 5.342 16 C -0.047 4.047 17 C -0.028 4.028 18 O -0.290 6.290 19 C 0.031 3.969 20 H 0.083 0.917 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.168 4.168 24 C 0.014 3.986 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.339 -26.152 -0.018 27.163 hybrid contribution 0.404 1.174 0.210 1.259 sum 7.743 -24.979 0.192 26.152 Atomic orbital electron populations 1.69988 1.06049 1.26389 1.51053 1.25047 0.94840 0.99244 0.95481 0.86557 0.80078 0.83936 0.77547 1.19779 1.21047 1.21056 1.21321 0.93011 0.91190 1.50237 0.92707 1.19099 0.94063 0.91285 0.97310 1.21645 0.99068 0.93983 1.00036 1.21466 0.97019 0.92705 1.02944 1.21848 1.00118 0.91963 1.03753 1.21217 0.88385 0.85488 0.75232 1.90688 1.14096 1.87299 1.48135 1.47105 1.06212 1.05645 1.75268 1.22129 0.80213 0.99774 1.02634 1.22994 0.98649 0.85230 0.95893 1.87966 1.22220 1.50739 1.68095 1.22439 0.81479 0.93851 0.99083 0.91721 1.22106 0.97705 0.96957 0.98512 1.22044 0.97820 0.95048 1.01016 1.22505 1.01352 0.95976 0.96969 1.21081 0.92981 0.84724 0.99813 0.90386 0.93102 0.96600 0.96597 0.93502 0.93484 0.91806 0.91826 0.89179 0.89119 0.90800 0.88967 0.87101 0.92145 0.89963 0.90482 0.90989 0.91247 0.91439 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.14 -1.86 4.22 -27.88 -0.12 -1.98 16 13 C 0.51 7.37 7.32 -10.99 -0.08 7.29 16 14 O -0.53 -9.59 14.56 5.56 0.08 -9.51 16 15 N -0.61 -7.03 2.96 -168.19 -0.50 -7.53 16 16 C 0.08 0.64 5.95 -4.32 -0.03 0.61 16 17 C 0.05 0.36 7.01 37.29 0.26 0.62 16 18 O -0.37 -3.52 10.22 -35.23 -0.36 -3.88 16 19 C 0.09 0.80 3.51 -26.71 -0.09 0.71 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 21 C -0.12 -0.87 6.59 -25.92 -0.17 -1.04 16 22 C -0.12 -0.98 6.81 -25.80 -0.18 -1.15 16 23 C -0.13 -1.43 5.69 -25.80 -0.15 -1.57 16 24 C 0.12 1.31 2.66 -69.14 -0.18 1.12 16 25 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.04 7.25 -51.93 -0.38 0.67 16 34 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.64 6.38 -51.93 -0.33 0.31 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.08 0.64 7.92 -51.92 -0.41 0.23 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.81 8.13 -51.92 -0.42 0.39 16 44 H 0.08 1.06 7.49 -51.93 -0.39 0.67 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -33.90 345.72 -9.18 -43.08 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.79 Total: -4.15 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.54 Total: -13.24 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.24 Total: -34.45 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.28 Total: -13.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.90 -9.18 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600364403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.415 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds