Wall clock time and date at job start Tue Mar 31 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99335 * 2 1 4 4 H 1.48502 * 109.47600 * 269.99734 * 3 2 1 5 5 H 1.48494 * 109.47449 * 30.00267 * 3 2 1 6 6 H 1.48509 * 109.46799 * 150.00203 * 3 2 1 7 7 C 1.37869 * 120.00626 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.53047 * 109.46216 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31332 * 178.62696 * 10 9 7 12 12 N 1.46929 * 108.77378 * 54.63848 * 11 10 9 13 13 C 1.34771 * 120.62839 * 126.37155 * 12 11 10 14 14 O 1.21281 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99679 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47125 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47253 * 180.02562 * 16 15 13 18 18 O 1.42904 * 112.84866 * 311.19767 * 17 16 15 19 19 C 1.53779 * 113.61250 * 180.02562 * 17 16 15 20 20 C 1.53787 * 87.07963 * 220.01477 * 19 17 16 21 21 C 1.53779 * 113.61561 * 82.50311 * 17 16 15 22 22 C 1.46928 * 118.73709 * 306.63914 * 12 11 10 23 23 C 1.52767 * 109.00756 * 53.31266 * 22 12 11 24 24 H 0.96998 * 120.00385 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46490 * 299.97354 * 9 7 2 26 26 H 1.09001 * 109.48959 * 58.67819 * 10 9 7 27 27 H 1.08995 * 109.52076 * 298.59898 * 10 9 7 28 28 H 1.09000 * 109.58479 * 294.84727 * 11 10 9 29 29 H 1.08998 * 109.69970 * 174.49866 * 11 10 9 30 30 H 1.09003 * 109.47035 * 60.00173 * 15 13 12 31 31 H 1.08994 * 109.47228 * 299.99459 * 15 13 12 32 32 H 1.09001 * 109.46840 * 59.99997 * 16 15 13 33 33 H 1.09004 * 109.47171 * 300.00180 * 16 15 13 34 34 H 0.96703 * 113.99856 * 48.80427 * 18 17 16 35 35 H 1.08997 * 113.61646 * 105.47109 * 19 17 16 36 36 H 1.08998 * 113.69354 * 334.57417 * 19 17 16 37 37 H 1.09004 * 113.61202 * 139.98084 * 20 19 17 38 38 H 1.08994 * 113.61447 * 270.88515 * 20 19 17 39 39 H 1.09002 * 113.61557 * 25.43372 * 21 17 16 40 40 H 1.09004 * 113.61501 * 254.52792 * 21 17 16 41 41 H 1.08998 * 109.58370 * 173.14814 * 22 12 11 42 42 H 1.09000 * 109.58476 * 293.57134 * 22 12 11 43 43 H 1.09000 * 109.56150 * 185.55370 * 23 22 12 44 44 H 1.09000 * 109.38399 * 65.51462 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0467 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 6 2.2461 -3.6621 -0.0005 11 6 1.4771 -4.9866 0.0341 12 7 0.5229 -5.0087 -1.0830 13 6 0.5128 -6.0345 -1.9571 14 8 1.2966 -6.9506 -1.8261 15 6 -0.4724 -6.0429 -3.0974 16 6 -0.2734 -7.3085 -3.9340 17 6 -1.2733 -7.3168 -5.0920 18 8 -2.6108 -7.0394 -4.6723 19 6 -1.1563 -8.5539 -5.9979 20 6 -1.3874 -7.6072 -7.1876 21 6 -0.8204 -6.4839 -6.3029 22 6 -0.4160 -3.8885 -1.2323 23 6 0.3705 -2.5790 -1.2495 24 1 -0.4850 0.8400 0.0004 25 1 0.6253 -2.5571 0.8900 26 1 2.8884 -3.5912 0.8773 27 1 2.8565 -3.6192 -0.9025 28 1 0.9375 -5.0712 0.9774 29 1 2.1741 -5.8188 -0.0640 30 1 -0.3113 -5.1651 -3.7233 31 1 -1.4874 -6.0251 -2.7007 32 1 -0.4342 -8.1865 -3.3084 33 1 0.7417 -7.3259 -4.3307 34 1 -2.6910 -6.2626 -4.1021 35 1 -1.9582 -9.2779 -5.8540 36 1 -0.1668 -9.0110 -5.9895 37 1 -0.7672 -7.8358 -8.0544 38 1 -2.4390 -7.4738 -7.4416 39 1 0.2615 -6.3738 -6.3770 40 1 -1.3513 -5.5374 -6.4049 41 1 -0.9662 -3.9951 -2.1672 42 1 -1.1132 -3.8819 -0.3944 43 1 -0.3221 -1.7374 -1.2607 44 1 0.9981 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:53 Heat of formation + Delta-G solvation = -83.859400 kcal Electronic energy + Delta-G solvation = -22735.902101 eV Core-core repulsion = 19460.024386 eV Total energy + Delta-G solvation = -3275.877715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21656 -39.36548 -36.87780 -34.84702 -33.55976 -32.70219 -31.13956 -30.11130 -26.92249 -25.99677 -25.55800 -23.12993 -22.48455 -21.72565 -19.84825 -19.73656 -18.30857 -17.38553 -16.44573 -16.07719 -15.71527 -15.51552 -15.11239 -14.84036 -14.58381 -14.04377 -13.56836 -13.27938 -13.17632 -12.84018 -12.76761 -12.55771 -12.39782 -11.95582 -11.90927 -11.58198 -11.33795 -11.25824 -11.15916 -10.99232 -10.97447 -10.67880 -10.43662 -10.28376 -10.14076 -9.76624 -9.71424 -9.41479 -9.21602 -8.97012 -8.42648 -8.04517 -6.07638 -4.13775 2.94141 3.25201 3.32586 3.35916 3.41964 3.87256 4.34605 4.37313 4.45687 4.59189 4.65371 4.96767 5.02182 5.11723 5.21779 5.39588 5.42749 5.51679 5.56961 5.62939 5.72688 5.76438 5.77438 5.88022 5.91669 6.03314 6.09419 6.11830 6.16606 6.19432 6.25437 6.41444 6.61269 6.85020 6.99046 7.09224 7.22048 7.47951 7.61599 7.86677 7.89262 7.98897 8.35534 8.52325 8.89636 9.51667 10.97892 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.003674 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.695033 B = 7619.339225 C = 8221.844323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.600 5.600 13 C 0.512 3.488 14 O -0.560 6.560 15 C -0.144 4.144 16 C -0.118 4.118 17 C 0.107 3.893 18 O -0.545 6.545 19 C -0.127 4.127 20 C -0.136 4.136 21 C -0.167 4.167 22 C 0.103 3.897 23 C -0.125 4.125 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.378 0.622 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -11.731 -9.536 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.333 5.333 13 C 0.300 3.700 14 O -0.440 6.440 15 C -0.184 4.184 16 C -0.157 4.157 17 C 0.066 3.934 18 O -0.352 6.352 19 C -0.164 4.164 20 C -0.173 4.173 21 C -0.205 4.205 22 C -0.019 4.019 23 C -0.164 4.164 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.259 -12.592 -9.799 16.515 hybrid contribution 0.527 1.685 0.379 1.805 sum -3.732 -10.908 -9.421 14.888 Atomic orbital electron populations 1.69827 1.05842 1.26503 1.50945 1.24954 0.94880 0.99064 0.95041 0.86614 0.79930 0.83483 0.78097 1.20729 1.21226 1.19954 1.21206 0.92966 0.90573 1.50291 0.92709 1.18632 0.92644 0.91744 0.93953 1.22006 0.98921 0.94236 1.00974 1.21692 0.91823 0.99677 0.87943 1.48271 1.36124 1.20979 1.27878 1.20462 0.84639 0.81807 0.83111 1.90637 1.41879 1.36447 1.75039 1.21664 0.99685 1.00486 0.96588 1.21877 0.99746 0.97720 0.96314 1.22260 0.82405 0.96833 0.91922 1.86459 1.26030 1.51742 1.70939 1.23019 1.02605 0.96042 0.94782 1.22759 1.01422 0.96470 0.96662 1.23658 1.01561 0.98439 0.96814 1.21966 0.91734 0.87550 1.00654 1.21954 1.00140 0.94654 0.99625 0.92955 0.95449 0.92152 0.93011 0.92263 0.90394 0.88710 0.89164 0.90492 0.90016 0.77265 0.90729 0.88835 0.91510 0.89963 0.89283 0.90911 0.91496 0.91892 0.87680 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 11.31 55.43 0.63 -23.34 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.43 8.56 -34.44 -0.29 -13.72 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 10 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 11 C 0.11 2.00 6.44 -3.71 -0.02 1.98 16 12 N -0.60 -10.39 2.98 -173.02 -0.52 -10.90 16 13 C 0.51 8.48 7.70 -10.99 -0.08 8.39 16 14 O -0.56 -10.92 15.39 5.56 0.09 -10.84 16 15 C -0.14 -1.74 3.53 -27.88 -0.10 -1.84 16 16 C -0.12 -1.37 4.19 -26.73 -0.11 -1.49 16 17 C 0.11 1.10 1.42 -89.81 -0.13 0.97 16 18 O -0.54 -5.89 13.37 -35.23 -0.47 -6.36 16 19 C -0.13 -1.20 7.47 -25.92 -0.19 -1.40 16 20 C -0.14 -1.21 8.02 -25.90 -0.21 -1.41 16 21 C -0.17 -1.58 7.46 -25.90 -0.19 -1.77 16 22 C 0.10 1.73 6.31 -3.93 -0.02 1.71 16 23 C -0.13 -2.65 5.14 -26.83 -0.14 -2.79 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 30 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 31 H 0.09 0.91 6.52 -51.93 -0.34 0.57 16 32 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 34 H 0.38 3.06 6.99 45.56 0.32 3.38 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.81 7.96 -51.93 -0.41 0.40 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.91 5.93 -51.93 -0.31 0.61 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.11 2.48 6.03 -51.93 -0.31 2.17 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -29.43 342.51 -8.90 -38.32 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.84 Total: 3.94 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.92 Total: -11.52 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.11 Total: -34.24 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.39 Total: -17.20 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.43 -8.90 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.536 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds