Wall clock time and date at job start Tue Mar 31 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99646 * 2 1 4 4 H 1.48497 * 109.47422 * 269.99902 * 3 2 1 5 5 H 1.48495 * 109.47581 * 30.00275 * 3 2 1 6 6 H 1.48503 * 109.46891 * 150.00145 * 3 2 1 7 7 C 1.37875 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99513 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.52940 * 299.91675 * 9 7 2 11 11 C 1.53042 * 109.49909 * 60.00100 * 9 7 2 12 12 C 1.53041 * 109.53960 * 181.31298 * 11 9 7 13 13 C 1.53188 * 109.31323 * 298.64003 * 12 11 9 14 14 N 1.46923 * 108.78248 * 54.63155 * 13 12 11 15 15 C 1.34777 * 120.63273 * 126.36632 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.28271 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 O 1.42894 * 112.85130 * 53.80499 * 19 18 17 21 21 C 1.53777 * 113.61704 * 282.49289 * 19 18 17 22 22 C 1.53779 * 87.08562 * 220.02154 * 21 19 18 23 23 C 1.53781 * 87.07801 * 25.43324 * 22 21 19 24 24 C 1.46929 * 118.73574 * 306.64745 * 14 13 12 25 25 H 0.97000 * 120.00560 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46026 * 61.29711 * 11 9 7 27 27 H 1.08996 * 109.46226 * 301.33387 * 11 9 7 28 28 H 1.08997 * 109.50165 * 178.68366 * 12 11 9 29 29 H 1.09004 * 109.49546 * 58.58311 * 12 11 9 30 30 H 1.09001 * 109.58188 * 294.84012 * 13 12 11 31 31 H 1.09008 * 109.70486 * 174.49517 * 13 12 11 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 34 34 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 35 35 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 36 36 H 0.96702 * 114.00252 * 309.66366 * 20 19 18 37 37 H 1.09001 * 113.61498 * 334.57460 * 21 19 18 38 38 H 1.09005 * 113.61225 * 105.46982 * 21 19 18 39 39 H 1.09000 * 113.61529 * 270.88664 * 22 21 19 40 40 H 1.08994 * 113.61682 * 139.98025 * 22 21 19 41 41 H 1.09008 * 113.60885 * 220.01972 * 23 22 21 42 42 H 1.09003 * 113.61743 * 89.11925 * 23 22 21 43 43 H 1.09003 * 109.58730 * 173.14184 * 24 14 13 44 44 H 1.09003 * 109.58586 * 293.56783 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6255 -2.5586 0.8901 11 6 0.3705 -2.5805 -1.2496 12 6 -0.4198 -3.8910 -1.2341 13 6 0.5562 -5.0715 -1.2527 14 7 1.4998 -4.9228 -0.1364 15 6 1.6772 -5.9218 0.7507 16 8 2.4588 -5.7865 1.6681 17 6 0.9085 -7.2092 0.5992 18 6 1.2974 -8.1707 1.7240 19 6 0.5166 -9.4774 1.5707 20 8 0.6621 -10.0620 0.2749 21 6 -0.9431 -9.3822 2.0452 22 6 -0.7585 -10.7875 2.6416 23 6 0.7439 -10.4698 2.7233 24 6 2.2419 -3.6618 -0.0020 25 1 -0.4851 0.8400 0.0004 26 1 0.9988 -2.5459 -2.1397 27 1 -0.3220 -1.7390 -1.2612 28 1 -1.0641 -3.9377 -2.1120 29 1 -1.0296 -3.9374 -0.3318 30 1 1.1034 -5.0783 -2.1954 31 1 0.0052 -6.0057 -1.1434 32 1 -0.1605 -7.0024 0.6514 33 1 1.1444 -7.6621 -0.3637 34 1 2.3664 -8.3775 1.6719 35 1 1.0616 -7.7177 2.6870 36 1 0.4974 -9.4485 -0.4542 37 1 -1.1090 -8.6082 2.7944 38 1 -1.6657 -9.3453 1.2299 39 1 -0.9974 -11.5920 1.9460 40 1 -1.2315 -10.9142 3.6154 41 1 1.3833 -11.3110 2.4554 42 1 1.0393 -9.9931 3.6580 43 1 2.8011 -3.6648 0.9337 44 1 2.9294 -3.5513 -0.8406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:17 Heat of formation + Delta-G solvation = -103.434281 kcal Electronic energy + Delta-G solvation = -22737.414326 eV Core-core repulsion = 19460.687780 eV Total energy + Delta-G solvation = -3276.726546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.31440 -40.40769 -38.39781 -35.60718 -35.37703 -33.71271 -32.92978 -31.87397 -27.88694 -26.88073 -26.58796 -25.55744 -23.40360 -22.93375 -21.31572 -20.56711 -19.71474 -18.70312 -18.11796 -17.10949 -16.89716 -16.65820 -16.57508 -15.89681 -15.80374 -15.12043 -15.02307 -14.77344 -14.52269 -14.44247 -14.12952 -13.66430 -13.58098 -13.37714 -12.90113 -12.88165 -12.82114 -12.64930 -12.57868 -12.05510 -12.03513 -11.87808 -11.85018 -11.70247 -11.60456 -11.27031 -11.06299 -10.87045 -10.69508 -10.50637 -10.42486 -9.47755 -8.12206 -6.27495 1.39468 1.40827 1.50792 1.68310 2.13496 2.42803 3.14138 3.16606 3.50507 3.56353 3.71042 3.93654 4.03544 4.09717 4.16341 4.25794 4.28162 4.37757 4.52996 4.55414 4.62195 4.72801 4.82581 4.84739 4.87594 4.88401 4.93258 4.99743 5.07501 5.09349 5.13151 5.23323 5.30039 5.38521 5.48511 5.50671 5.57777 5.60370 5.92527 6.13717 6.33798 6.60042 6.82176 6.85887 7.25230 7.40767 8.91267 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034943 B = 0.003410 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.107407 B = 8208.916158 C = 8412.058759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.041 3.959 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.109 3.891 14 N -0.609 5.609 15 C 0.500 3.500 16 O -0.600 6.600 17 C -0.130 4.130 18 C -0.114 4.114 19 C 0.111 3.889 20 O -0.554 6.554 21 C -0.163 4.163 22 C -0.132 4.132 23 C -0.135 4.135 24 C 0.129 3.871 25 H 0.262 0.738 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -19.412 -2.186 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.003 0.997 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.013 4.013 14 N -0.340 5.340 15 C 0.290 3.710 16 O -0.482 6.482 17 C -0.170 4.170 18 C -0.153 4.153 19 C 0.070 3.930 20 O -0.363 6.363 21 C -0.201 4.201 22 C -0.169 4.169 23 C -0.173 4.173 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.030 -19.746 -1.383 20.201 hybrid contribution 0.492 2.078 -0.012 2.135 sum -3.538 -17.669 -1.396 18.073 Atomic orbital electron populations 1.70000 1.07037 1.27222 1.50859 1.25679 0.95713 1.02237 0.94549 0.85611 0.78592 0.79349 0.78443 1.19610 1.20857 1.19780 1.21449 0.93028 0.92049 1.51322 0.93141 1.18791 0.93205 0.91615 0.94176 0.99689 1.21430 0.98771 0.97331 0.96989 1.21917 0.97868 0.94914 1.01943 1.22026 0.90585 0.99895 0.88778 1.48415 1.42469 1.14706 1.28427 1.21489 0.82510 0.86353 0.80633 1.90644 1.40083 1.82855 1.34580 1.21696 1.01674 0.91114 1.02484 1.21800 1.00545 0.94185 0.98741 1.22195 0.94895 0.91495 0.84417 1.86457 1.93124 1.41753 1.14953 1.23629 0.96609 0.98142 1.01704 1.22733 0.95415 0.97157 1.01600 1.23108 0.98089 0.98902 0.97165 1.21425 0.94619 0.83208 1.00120 0.92907 0.94512 0.92020 0.89107 0.93630 0.90034 0.86187 0.86501 0.85806 0.92353 0.91398 0.75825 0.89243 0.89940 0.89965 0.90477 0.91206 0.88532 0.93279 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.09 11.31 21.45 0.24 -51.85 16 2 C 0.02 0.97 5.30 84.65 0.45 1.41 16 3 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.12 8.56 25.60 0.22 -29.91 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.04 2.08 2.24 -11.60 -0.03 2.06 16 10 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 11 C -0.11 -4.73 4.96 30.62 0.15 -4.58 16 12 C -0.13 -4.09 6.08 30.67 0.19 -3.91 16 13 C 0.11 2.76 6.34 86.36 0.55 3.31 16 14 N -0.61 -21.09 2.98 -819.71 -2.44 -23.53 16 15 C 0.50 16.75 7.70 87.66 0.67 17.43 16 16 O -0.60 -25.91 15.40 -3.04 -0.05 -25.95 16 17 C -0.13 -2.65 3.61 29.85 0.11 -2.54 16 18 C -0.11 -2.50 4.14 30.59 0.13 -2.38 16 19 C 0.11 1.96 1.38 -10.27 -0.01 1.94 16 20 O -0.55 -9.54 13.39 -148.98 -1.99 -11.53 16 21 C -0.16 -2.47 7.32 31.12 0.23 -2.24 16 22 C -0.13 -1.96 8.02 31.12 0.25 -1.71 16 23 C -0.14 -2.34 7.47 31.12 0.23 -2.11 16 24 C 0.13 5.69 5.63 86.22 0.49 6.18 16 25 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.12 1.91 5.94 -2.38 -0.01 1.90 16 32 H 0.12 1.89 7.61 -2.38 -0.02 1.87 16 33 H 0.12 1.66 6.55 -2.39 -0.02 1.64 16 34 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 35 H 0.07 1.68 8.01 -2.39 -0.02 1.67 16 36 H 0.39 3.85 7.18 -74.06 -0.53 3.32 16 37 H 0.09 1.37 8.03 -2.39 -0.02 1.36 16 38 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 43 H 0.05 2.41 7.01 -2.39 -0.02 2.40 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -71.04 342.72 1.85 -69.19 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.45 Total: 14.99 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 3.62 Total: -17.04 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.20 Total: -75.38 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -2.04 Total: -37.49 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.04 1.85 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.245 kcal (2) G-P(sol) polarization free energy of solvation -71.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds