Wall clock time and date at job start Tue Mar 31 2020 08:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47729 * 2 1 4 4 C 1.53003 * 109.46932 * 305.00279 * 3 2 1 5 5 C 1.52993 * 109.47578 * 185.00108 * 3 2 1 6 6 N 1.46901 * 109.47692 * 173.50589 * 5 3 2 7 7 C 1.46892 * 111.00083 * 201.88150 * 6 5 3 8 8 C 1.50703 * 109.47167 * 160.83261 * 7 6 5 9 9 H 1.08005 * 119.99925 * 3.17361 * 8 7 6 10 10 C 1.37877 * 120.00163 * 183.18098 * 8 7 6 11 11 N 1.31513 * 120.00001 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00090 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46827 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47054 * 119.99506 * 12 10 8 15 15 H 1.48504 * 109.46709 * 239.99607 * 12 10 8 16 16 C 1.46900 * 111.00136 * 77.92232 * 6 5 3 17 17 C 1.50700 * 109.47165 * 196.02412 * 16 6 5 18 18 C 1.34512 * 125.79201 * 89.99497 * 17 16 6 19 19 C 1.41382 * 106.83839 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.84287 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41783 * 359.73540 * 20 19 18 22 22 O 1.42906 * 109.47046 * 64.99703 * 3 2 1 23 23 C 1.42898 * 113.99599 * 60.00439 * 22 3 2 24 24 H 1.09002 * 109.47123 * 300.00408 * 1 2 3 25 25 H 1.09007 * 109.46757 * 59.99687 * 1 2 3 26 26 H 1.08992 * 109.47756 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46757 * 120.00313 * 2 1 3 28 28 H 1.09002 * 109.47123 * 239.99592 * 2 1 3 29 29 H 1.08995 * 109.47066 * 59.99976 * 4 3 2 30 30 H 1.09005 * 109.46917 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.46978 * 299.99229 * 4 3 2 32 32 H 1.09000 * 109.47210 * 293.50425 * 5 3 2 33 33 H 1.09003 * 109.47401 * 53.50101 * 5 3 2 34 34 H 1.09001 * 109.47428 * 280.82913 * 7 6 5 35 35 H 1.09001 * 109.47556 * 40.82950 * 7 6 5 36 36 H 0.97002 * 120.00077 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.47165 * 316.01902 * 16 6 5 38 38 H 1.08997 * 109.47174 * 76.01983 * 16 6 5 39 39 H 1.07999 * 126.58083 * 0.04576 * 18 17 16 40 40 H 1.08004 * 126.57510 * 179.97438 * 19 18 17 41 41 H 1.07999 * 125.78498 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.47597 * 59.99695 * 23 22 3 43 43 H 1.09003 * 109.47037 * 179.97438 * 23 22 3 44 44 H 1.09002 * 109.47118 * 299.99638 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4301 2.1991 -1.1816 5 6 3.5649 1.4442 -0.1257 6 7 4.0418 2.8248 -0.2820 7 6 5.3701 2.8551 -0.9087 8 6 5.6260 4.2270 -1.4774 9 1 4.8989 5.0135 -1.3383 10 6 6.7881 4.4781 -2.1756 11 7 7.6735 3.5206 -2.3447 12 14 7.1056 6.1789 -2.8800 13 1 5.9641 7.0709 -2.5533 14 1 8.3516 6.7333 -2.2923 15 1 7.2532 6.0842 -4.3546 16 6 4.0521 3.5275 1.0079 17 6 4.1588 5.0118 0.7706 18 6 3.1263 5.8599 0.6153 19 6 3.6789 7.1461 0.4173 20 6 5.0161 7.0069 0.4628 21 8 5.3008 5.7130 0.6825 22 8 1.6621 2.0813 1.2211 23 6 2.1825 1.4500 2.3927 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.3438 2.1978 -1.0920 30 1 1.7932 3.2268 -1.1814 31 1 1.7184 1.7118 -2.1129 32 1 4.0040 1.0075 0.7713 33 1 3.8584 0.8576 -0.9963 34 1 6.1296 2.6240 -0.1618 35 1 5.4112 2.1164 -1.7092 36 1 8.4913 3.6973 -2.8355 37 1 3.1296 3.3111 1.5469 38 1 4.9048 3.1916 1.5979 39 1 2.0766 5.6069 0.6380 40 1 3.1323 8.0640 0.2590 41 1 5.7380 7.8018 0.3474 42 1 3.2718 1.4514 2.3528 43 1 1.8510 1.9949 3.2766 44 1 1.8220 0.4225 2.4423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602433028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:30 Heat of formation + Delta-G solvation = -15.108527 kcal Electronic energy + Delta-G solvation = -24123.149238 eV Core-core repulsion = 20850.252784 eV Total energy + Delta-G solvation = -3272.896454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.63611 -39.47424 -35.96336 -33.82818 -32.48187 -31.98537 -30.25126 -29.16712 -27.58279 -26.21381 -25.82781 -24.38357 -22.83733 -20.89232 -20.67519 -19.58289 -19.27192 -16.76212 -16.51790 -16.02958 -15.76503 -15.08615 -14.86486 -14.54154 -14.39278 -13.90275 -13.89343 -13.35623 -13.20486 -12.48157 -12.17988 -12.06090 -11.95039 -11.90520 -11.76285 -11.56104 -11.50066 -11.27089 -11.13386 -11.08653 -10.87977 -10.74783 -10.54764 -10.38897 -10.14022 -9.81592 -9.36981 -8.99946 -8.91184 -8.33822 -7.51212 -7.27540 -5.93779 -3.90259 2.68195 3.34094 3.40812 3.46779 3.49181 3.94797 4.03821 4.50734 4.75487 5.04549 5.16702 5.24505 5.39383 5.43666 5.44152 5.49517 5.55476 5.71061 5.74635 5.78395 5.82408 5.85290 5.91499 5.97238 6.10002 6.11817 6.17836 6.25863 6.28852 6.32886 6.40747 6.61813 6.74525 6.90678 6.98557 7.18668 7.28501 7.38544 7.50215 7.88647 8.07281 8.13885 8.22020 8.56577 9.15342 9.72051 11.17765 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.006345 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.506146 B = 4411.615318 C = 5191.438217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.122 3.878 4 C -0.127 4.127 5 C 0.031 3.969 6 N -0.521 5.521 7 C 0.189 3.811 8 C -0.484 4.484 9 H 0.071 0.929 10 C 0.056 3.944 11 N -0.905 5.905 12 Si 0.885 3.115 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.287 1.287 16 C 0.124 3.876 17 C 0.048 3.952 18 C -0.222 4.222 19 C -0.225 4.225 20 C -0.051 4.051 21 O -0.145 6.145 22 O -0.369 6.369 23 C 0.017 3.983 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.080 0.920 34 H -0.010 1.010 35 H 0.030 0.970 36 H 0.257 0.743 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.184 0.816 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 -3.532 7.596 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.082 3.918 4 C -0.184 4.184 5 C -0.098 4.098 6 N -0.245 5.245 7 C 0.064 3.936 8 C -0.523 4.523 9 H 0.089 0.911 10 C -0.144 4.144 11 N -0.546 5.546 12 Si 0.714 3.286 13 H -0.192 1.192 14 H -0.213 1.213 15 H -0.214 1.214 16 C -0.003 4.003 17 C -0.004 4.004 18 C -0.242 4.242 19 C -0.245 4.245 20 C -0.120 4.120 21 O -0.039 6.039 22 O -0.288 6.288 23 C -0.080 4.080 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.008 0.992 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.049 0.951 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.201 0.799 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.491 -3.290 7.228 13.969 hybrid contribution 1.120 0.395 -0.112 1.193 sum -10.371 -2.895 7.116 12.907 Atomic orbital electron populations 1.21733 0.95290 1.00819 1.02545 1.22113 0.96980 0.97326 1.02399 1.21646 0.93482 0.91194 0.85464 1.21634 0.99134 1.02863 0.94753 1.22664 0.94531 0.91888 1.00736 1.62060 1.30655 1.11401 1.20377 1.19914 0.81755 0.98502 0.93437 1.21281 1.03193 0.95900 1.31890 0.91051 1.24884 0.96209 0.96681 0.96609 1.69964 1.09786 1.32139 1.42694 0.86608 0.78154 0.85266 0.78609 1.19197 1.21263 1.21370 1.20882 1.01571 0.85888 0.91979 1.21980 0.82886 0.93921 1.01621 1.21263 0.99299 0.92427 1.11172 1.21572 0.94213 0.98541 1.10144 1.23682 0.96650 0.84952 1.06687 1.84274 1.33727 1.17872 1.67994 1.87963 1.73882 1.53495 1.13462 1.22820 0.98785 0.97796 0.88557 0.92397 0.92126 0.93439 0.91963 0.91041 0.93060 0.89779 0.91775 0.95240 0.90192 0.99243 0.95172 0.93303 0.86985 0.95092 0.84563 0.84910 0.79925 0.93739 0.89996 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.32 37.16 0.35 -1.20 16 2 C -0.15 -1.76 4.78 -26.73 -0.13 -1.89 16 3 C 0.12 1.74 0.59 -90.63 -0.05 1.69 16 4 C -0.13 -1.90 8.12 37.16 0.30 -1.60 16 5 C 0.03 0.52 4.06 -3.83 -0.02 0.50 16 6 N -0.52 -10.82 3.35 -237.52 -0.80 -11.61 16 7 C 0.19 4.84 4.75 -4.98 -0.02 4.82 16 8 C -0.48 -13.51 6.97 -34.44 -0.24 -13.75 16 9 H 0.07 2.02 5.12 -52.48 -0.27 1.75 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 12 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 C 0.12 2.44 4.59 -4.98 -0.02 2.41 16 17 C 0.05 1.01 4.57 -35.63 -0.16 0.85 16 18 C -0.22 -4.32 10.80 -39.70 -0.43 -4.75 16 19 C -0.23 -4.20 10.91 -39.70 -0.43 -4.63 16 20 C -0.05 -1.00 11.79 29.42 0.35 -0.65 16 21 O -0.15 -3.31 8.47 5.72 0.05 -3.26 16 22 O -0.37 -5.31 7.91 -35.23 -0.28 -5.59 16 23 C 0.02 0.20 9.03 101.05 0.91 1.11 16 24 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 25 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.68 6.29 -51.93 -0.33 0.36 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 30 H 0.08 1.50 7.44 -51.93 -0.39 1.12 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.48 6.06 -51.93 -0.31 0.16 16 33 H 0.08 1.39 7.56 -51.93 -0.39 1.00 16 34 H -0.01 -0.28 7.79 -51.93 -0.40 -0.69 16 35 H 0.03 0.83 7.59 -51.93 -0.39 0.43 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.11 1.93 3.92 -51.93 -0.20 1.73 16 38 H 0.03 0.63 7.82 -51.93 -0.41 0.22 16 39 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 41 H 0.18 3.03 8.06 -52.49 -0.42 2.61 16 42 H 0.04 0.56 5.37 -51.93 -0.28 0.28 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.43 6.31 -51.93 -0.33 0.10 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -31.12 336.44 -6.80 -37.92 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.86 Total: 2.31 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 0.30 Total: -15.56 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.06 Total: -38.09 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.23 Total: -8.85 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.12 -6.80 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602433028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.816 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds