Wall clock time and date at job start Tue Mar 31 2020 07:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00206 * 2 1 4 4 C 1.53000 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46945 * 184.99908 * 4 3 2 6 6 N 1.46905 * 109.46838 * 65.00199 * 4 3 2 7 7 C 1.46898 * 111.00294 * 85.00100 * 6 4 3 8 8 C 1.52995 * 109.47322 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.46988 * 304.99983 * 8 7 6 10 10 C 1.53000 * 109.46909 * 64.99917 * 8 7 6 11 11 C 1.52995 * 109.47064 * 184.99672 * 8 7 6 12 12 C 1.50703 * 109.47191 * 174.99961 * 11 8 7 13 13 H 1.08000 * 119.99960 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00268 * 179.97438 * 12 11 8 15 15 N 1.31512 * 119.99783 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99887 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47239 * 90.00752 * 16 14 12 18 18 H 1.48502 * 109.47180 * 210.00349 * 16 14 12 19 19 H 1.48492 * 109.47345 * 330.00282 * 16 14 12 20 20 C 1.50695 * 109.47301 * 305.00183 * 4 3 2 21 21 C 1.34515 * 125.78599 * 259.99929 * 20 4 3 22 22 C 1.41388 * 106.83843 * 180.02562 * 21 20 4 23 23 C 1.34506 * 106.83998 * 359.97438 * 22 21 20 24 24 C 1.50708 * 125.79179 * 179.97438 * 23 22 21 25 25 O 1.34304 * 125.79068 * 80.03916 * 20 4 3 26 26 H 1.09000 * 109.47183 * 59.99603 * 1 2 3 27 27 H 1.08993 * 109.47409 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46916 * 300.00229 * 1 2 3 29 29 H 1.09005 * 109.47160 * 60.00160 * 3 2 1 30 30 H 1.08996 * 109.47195 * 300.00230 * 3 2 1 31 31 H 1.00902 * 110.99666 * 208.95318 * 6 4 3 32 32 H 1.09007 * 109.47030 * 300.00077 * 7 6 4 33 33 H 1.09002 * 109.47059 * 59.99713 * 7 6 4 34 34 H 1.08997 * 109.46939 * 179.97438 * 10 8 7 35 35 H 1.09006 * 109.47274 * 300.00099 * 10 8 7 36 36 H 1.09004 * 109.47242 * 60.00221 * 10 8 7 37 37 H 1.09001 * 109.47927 * 294.99926 * 11 8 7 38 38 H 1.08996 * 109.47385 * 55.00215 * 11 8 7 39 39 H 0.97009 * 119.99773 * 179.97438 * 15 14 12 40 40 H 1.08001 * 126.58408 * 359.77293 * 21 20 4 41 41 H 1.08000 * 126.57885 * 180.02562 * 22 21 20 42 42 H 1.08990 * 109.47315 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.46860 * 300.01835 * 24 23 22 44 44 H 1.09000 * 109.47092 * 60.01199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2544 7 6 4.1207 1.5656 -2.3178 8 6 4.5824 0.8812 -3.6060 9 1 5.4967 0.3203 -3.4118 10 6 3.4920 -0.0743 -4.0948 11 6 4.8510 1.9395 -4.6777 12 6 5.4220 1.2776 -5.9053 13 1 5.5773 0.2090 -5.9198 14 6 5.7451 2.0362 -7.0103 15 7 5.5555 3.3375 -6.9928 16 14 6.4535 1.2159 -8.5316 17 1 5.3478 0.8158 -9.4386 18 1 7.3507 2.1676 -9.2349 19 1 7.2253 0.0121 -8.1310 20 6 3.9714 0.3328 1.1648 21 6 4.4492 0.7878 2.3370 22 6 4.7314 -0.3467 3.1323 23 6 4.4086 -1.4269 2.3987 24 6 4.5413 -2.8624 2.8380 25 8 3.9495 -1.0094 1.2076 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 4.8378 0.0515 -1.1212 32 1 3.1609 2.0531 -2.4888 33 1 4.8581 2.3102 -2.0181 34 1 3.8207 -0.5615 -5.0127 35 1 3.3005 -0.8283 -3.3312 36 1 2.5777 0.4866 -4.2889 37 1 3.9180 2.4404 -4.9358 38 1 5.5625 2.6713 -4.2953 39 1 5.7833 3.8713 -7.7702 40 1 4.5938 1.8212 2.6156 41 1 5.1289 -0.3460 4.1364 42 1 4.2045 -3.5201 2.0369 43 1 5.5847 -3.0766 3.0693 44 1 3.9309 -3.0286 3.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602563694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:29 Heat of formation + Delta-G solvation = -46.606544 kcal Electronic energy + Delta-G solvation = -22330.847343 eV Core-core repulsion = 19056.585033 eV Total energy + Delta-G solvation = -3274.262310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.54054 -38.22642 -36.63242 -34.43921 -33.11101 -32.39778 -31.43533 -29.26019 -26.97855 -26.63239 -25.57161 -25.03846 -22.83038 -21.64536 -21.45152 -19.96425 -19.13102 -16.95545 -16.49770 -16.30423 -16.15384 -15.55987 -15.04120 -14.75544 -14.46414 -14.34204 -14.02171 -13.46500 -13.20268 -13.07534 -12.94971 -12.73871 -12.55840 -12.25080 -12.02191 -11.97482 -11.59886 -11.52621 -11.31266 -11.05891 -10.81292 -10.74011 -10.24914 -10.22270 -9.83403 -9.68470 -9.55328 -9.12178 -8.94142 -8.30737 -8.26739 -8.13713 -5.95695 -3.96408 1.74551 2.58257 2.92540 3.34895 3.41005 3.44722 3.80739 4.27269 4.50974 4.53061 4.87247 5.01590 5.05908 5.17782 5.29375 5.30762 5.34207 5.40214 5.41422 5.43681 5.52385 5.60290 5.68037 5.69596 5.80405 5.87112 5.93927 6.14421 6.18596 6.42579 6.51319 6.57965 6.75220 7.01841 7.16978 7.20803 7.24736 7.27498 7.41964 7.62495 7.71930 7.87680 8.04737 8.49225 9.09930 9.66887 11.15896 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.003440 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.291885 B = 8136.827027 C = 8580.158900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.074 3.926 4 C 0.168 3.832 5 H 0.085 0.915 6 N -0.670 5.670 7 C 0.061 3.939 8 C -0.081 4.081 9 H 0.054 0.946 10 C -0.122 4.122 11 C 0.028 3.972 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.006 3.994 21 C -0.216 4.216 22 C -0.217 4.217 23 C -0.018 4.018 24 C -0.072 4.072 25 O -0.144 6.144 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.345 0.655 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -6.607 21.063 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C -0.003 4.003 4 C 0.058 3.942 5 H 0.103 0.897 6 N -0.302 5.302 7 C -0.067 4.067 8 C -0.100 4.100 9 H 0.072 0.928 10 C -0.179 4.179 11 C -0.010 4.010 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.045 4.045 21 C -0.236 4.236 22 C -0.237 4.237 23 C -0.069 4.069 24 C -0.129 4.129 25 O -0.039 6.039 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.795 -6.995 20.518 22.718 hybrid contribution 1.038 0.660 -0.423 1.300 sum -5.757 -6.335 20.095 21.842 Atomic orbital electron populations 1.22694 0.82027 1.02404 0.99410 1.88045 1.18483 1.26527 1.95158 1.22567 0.92146 0.85671 0.99965 1.20217 0.94348 0.93945 0.85704 0.89748 1.60536 1.38181 1.27429 1.04032 1.22286 1.00008 0.92665 0.91753 1.21182 0.97489 0.98014 0.93294 0.92777 1.21577 0.97687 0.98614 1.00049 1.19120 0.96663 0.93067 0.92130 1.21244 1.41245 0.93922 0.98556 0.92549 1.25017 0.96024 0.94819 0.98717 1.69968 1.48965 1.04830 1.30007 0.86628 0.79035 0.79245 0.83308 1.20725 1.21347 1.19899 1.22183 1.03727 0.81037 0.97562 1.21523 1.07537 1.00047 0.94446 1.21446 1.08953 0.91610 1.01654 1.22463 1.02544 0.97103 0.84810 1.20265 1.03063 0.87820 1.01745 1.84096 1.64448 1.21819 1.33519 0.94150 0.89959 0.94871 0.93464 0.92175 0.83638 0.91442 0.95539 0.92881 0.93641 0.94306 0.96583 0.96942 0.93138 0.83822 0.83906 0.90495 0.89948 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.36 -5.25 10.03 -35.23 -0.35 -5.60 16 3 C 0.07 0.95 5.68 37.16 0.21 1.16 16 4 C 0.17 2.24 2.87 -68.86 -0.20 2.04 16 5 H 0.09 1.01 7.79 -51.93 -0.40 0.60 16 6 N -0.67 -10.37 5.70 -107.95 -0.62 -10.99 16 7 C 0.06 1.05 4.87 -3.83 -0.02 1.03 16 8 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 9 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 10 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 11 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 12 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 13 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 C 0.01 0.09 5.36 -35.63 -0.19 -0.10 16 21 C -0.22 -2.64 10.80 -39.70 -0.43 -3.07 16 22 C -0.22 -2.50 10.81 -39.70 -0.43 -2.93 16 23 C -0.02 -0.22 7.32 -35.62 -0.26 -0.48 16 24 C -0.07 -0.59 10.42 36.01 0.38 -0.21 16 25 O -0.14 -2.12 10.52 5.70 0.06 -2.06 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.77 7.36 -51.93 -0.38 0.39 16 31 H 0.34 5.40 8.35 -39.29 -0.33 5.07 16 32 H 0.07 1.16 7.36 -51.92 -0.38 0.78 16 33 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 35 H 0.04 0.85 7.75 -51.93 -0.40 0.45 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -32.10 363.87 -7.62 -39.73 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.68 Total: 0.76 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -0.23 Total: -17.80 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.12 Total: -37.38 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.29 Total: -7.66 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.10 -7.62 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.881 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds