Wall clock time and date at job start Tue Mar 31 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 114.00031 * 2 1 4 4 C 1.53005 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47424 * 175.00279 * 4 3 2 6 6 N 1.46907 * 109.46965 * 294.99735 * 4 3 2 7 7 C 1.46895 * 111.00034 * 275.00332 * 6 4 3 8 8 C 1.53006 * 109.46799 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46884 * 55.00215 * 8 7 6 10 10 C 1.52997 * 109.47127 * 294.99463 * 8 7 6 11 11 C 1.52999 * 109.46623 * 174.99527 * 8 7 6 12 12 C 1.50707 * 109.47009 * 184.99986 * 11 8 7 13 13 H 1.07996 * 119.99521 * 359.97438 * 12 11 8 14 14 C 1.37873 * 120.00339 * 180.02562 * 12 11 8 15 15 N 1.31521 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00392 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47090 * 59.99390 * 16 14 12 18 18 H 1.48494 * 109.47443 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46898 * 299.99772 * 16 14 12 20 20 C 1.50696 * 109.47344 * 54.99697 * 4 3 2 21 21 C 1.34507 * 125.78890 * 99.71580 * 20 4 3 22 22 C 1.41386 * 106.84252 * 179.89269 * 21 20 4 23 23 C 1.34519 * 106.83926 * 0.37468 * 22 21 20 24 24 C 1.50699 * 125.78900 * 179.74840 * 23 22 21 25 25 O 1.34304 * 125.78824 * 280.03208 * 20 4 3 26 26 H 1.08996 * 109.47598 * 300.00372 * 1 2 3 27 27 H 1.09000 * 109.46756 * 60.00313 * 1 2 3 28 28 H 1.09002 * 109.47550 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47436 * 59.99960 * 3 2 1 30 30 H 1.09004 * 109.47182 * 299.99599 * 3 2 1 31 31 H 1.00909 * 110.99662 * 38.95444 * 6 4 3 32 32 H 1.09001 * 109.47563 * 59.99604 * 7 6 4 33 33 H 1.09000 * 109.46722 * 299.99217 * 7 6 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 36 36 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 37 37 H 1.08994 * 109.47465 * 305.00017 * 11 8 7 38 38 H 1.08998 * 109.47565 * 65.00449 * 11 8 7 39 39 H 0.96995 * 120.00234 * 180.02562 * 15 14 12 40 40 H 1.08003 * 126.58397 * 0.02799 * 21 20 4 41 41 H 1.07998 * 126.58104 * 180.12357 * 22 21 20 42 42 H 1.08998 * 109.46623 * 179.97438 * 24 23 22 43 43 H 1.08991 * 109.47587 * 300.00211 * 24 23 22 44 44 H 1.09001 * 109.46924 * 60.00135 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9769 0.5627 1.2563 7 6 4.1188 1.5663 2.3194 8 6 4.5782 0.8822 3.6086 9 1 5.4924 0.3207 3.4160 10 6 3.4865 -0.0724 4.0963 11 6 4.8461 1.9409 4.6801 12 6 5.4150 1.2792 5.9089 13 1 5.5695 0.2104 5.9240 14 6 5.7371 2.0381 7.0140 15 7 5.5485 3.3395 6.9957 16 14 6.4429 1.2180 8.5367 17 1 7.7146 0.5355 8.1870 18 1 6.7028 2.2455 9.5768 19 1 5.4728 0.2211 9.0566 20 6 3.9724 0.3322 -1.1628 21 6 4.4461 0.7868 -2.3368 22 6 4.7328 -0.3480 -3.1298 23 6 4.4093 -1.4280 -2.3961 24 6 4.5404 -2.8635 -2.8356 25 8 3.9493 -1.0099 -1.2055 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.3464 -0.1739 1.5361 32 1 3.1589 2.0539 2.4894 33 1 4.8565 2.3108 2.0200 34 1 3.8136 -0.5594 5.0150 35 1 3.2957 -0.8266 3.3328 36 1 2.5723 0.4892 4.2889 37 1 5.5586 2.6720 4.2984 38 1 3.9130 2.4425 4.9367 39 1 5.7754 3.8735 7.7730 40 1 4.5834 1.8203 -2.6187 41 1 5.1310 -0.3477 -4.1338 42 1 4.2033 -3.5210 -2.0342 43 1 3.9297 -3.0291 -3.7230 44 1 5.5836 -3.0788 -3.0671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602563695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:45 Heat of formation + Delta-G solvation = -49.153067 kcal Electronic energy + Delta-G solvation = -22346.327972 eV Core-core repulsion = 19071.955237 eV Total energy + Delta-G solvation = -3274.372736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -42.41156 -38.55035 -36.69856 -34.43379 -33.00572 -32.40025 -31.41664 -29.18101 -27.03374 -26.70433 -25.62430 -25.18666 -22.81205 -21.69874 -21.52236 -19.88590 -19.01396 -16.97715 -16.45269 -16.35117 -16.21783 -15.77570 -15.47027 -14.69217 -14.61874 -14.25255 -13.77648 -13.37979 -13.15682 -13.04410 -12.96977 -12.64253 -12.55536 -12.35762 -12.05955 -11.94799 -11.80066 -11.57952 -11.44016 -11.31273 -10.85391 -10.74002 -10.32238 -10.20453 -9.85430 -9.72019 -9.68453 -9.14039 -8.96573 -8.30766 -8.26300 -8.07042 -5.95763 -3.96698 1.87415 2.69840 3.05755 3.36385 3.40445 3.43374 3.57746 4.35734 4.51275 4.64098 4.82182 4.94393 5.11554 5.14833 5.18358 5.24385 5.28264 5.31609 5.35224 5.40092 5.46164 5.52513 5.61677 5.77032 5.78749 5.90650 6.04717 6.09484 6.23122 6.27088 6.48251 6.58521 6.62579 6.90061 6.99576 7.13583 7.18913 7.29056 7.42950 7.66201 7.71639 7.87779 8.04486 8.48642 9.09362 9.66588 11.15779 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.003439 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.169035 B = 8139.499264 C = 8579.600760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.029 3.971 4 C 0.168 3.832 5 H 0.118 0.882 6 N -0.678 5.678 7 C 0.062 3.938 8 C -0.084 4.084 9 H 0.066 0.934 10 C -0.134 4.134 11 C 0.029 3.971 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.032 3.968 21 C -0.223 4.223 22 C -0.215 4.215 23 C -0.024 4.024 24 C -0.071 4.071 25 O -0.149 6.149 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.354 0.646 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 -6.632 -20.325 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.050 4.050 4 C 0.057 3.943 5 H 0.136 0.864 6 N -0.311 5.311 7 C -0.066 4.066 8 C -0.103 4.103 9 H 0.085 0.915 10 C -0.191 4.191 11 C -0.009 4.009 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.020 4.020 21 C -0.243 4.243 22 C -0.235 4.235 23 C -0.075 4.075 24 C -0.128 4.128 25 O -0.044 6.044 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.260 -6.828 -20.125 22.458 hybrid contribution -0.689 0.354 0.892 1.182 sum -7.950 -6.473 -19.233 21.795 Atomic orbital electron populations 1.22730 0.81113 1.02740 0.99813 1.87933 1.19536 1.26917 1.95324 1.23348 0.94825 0.85736 1.01057 1.20233 0.90656 0.95774 0.87678 0.86418 1.60581 1.54411 1.13597 1.02498 1.22248 0.99195 0.93733 0.91464 1.21217 0.97948 0.98030 0.93056 0.91529 1.21737 0.98343 0.98479 1.00565 1.19102 0.96650 0.93076 0.92023 1.21208 1.41495 0.93896 0.98508 0.92595 1.25013 0.95973 0.94822 0.98718 1.69955 1.48852 1.04811 1.30153 0.86687 0.79673 0.79033 0.82784 1.20256 1.21400 1.20313 1.22084 1.02701 0.80676 0.96555 1.21439 1.08357 0.99920 0.94581 1.21412 1.08790 0.91681 1.01569 1.22383 1.03167 0.96983 0.84923 1.20235 1.03006 0.87950 1.01560 1.84041 1.64593 1.22121 1.33610 0.93992 0.94341 0.89620 0.92060 0.92705 0.82472 0.95660 0.91211 0.91857 0.94807 0.94109 0.96637 0.96774 0.93067 0.83945 0.84065 0.90671 0.90188 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.94 9.44 -35.23 -0.33 -5.27 16 3 C 0.03 0.34 5.60 37.16 0.21 0.55 16 4 C 0.17 2.24 2.87 -68.86 -0.20 2.04 16 5 H 0.12 1.40 7.79 -51.93 -0.40 1.00 16 6 N -0.68 -10.73 6.23 -107.95 -0.67 -11.40 16 7 C 0.06 1.07 4.94 -3.82 -0.02 1.05 16 8 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 9 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 10 C -0.13 -2.57 8.77 37.16 0.33 -2.25 16 11 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 12 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 13 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.03 0.45 5.72 -35.63 -0.20 0.25 16 21 C -0.22 -2.88 10.80 -39.70 -0.43 -3.31 16 22 C -0.22 -2.63 10.81 -39.70 -0.43 -3.06 16 23 C -0.02 -0.30 7.32 -35.62 -0.26 -0.56 16 24 C -0.07 -0.61 10.42 36.01 0.38 -0.24 16 25 O -0.15 -2.28 10.52 5.69 0.06 -2.22 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.71 7.35 -51.93 -0.38 0.33 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.35 5.76 6.19 -39.29 -0.24 5.52 16 32 H 0.03 0.42 7.36 -51.93 -0.38 0.04 16 33 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 34 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 35 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -31.97 360.86 -7.59 -39.56 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.54 Total: 2.09 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -0.26 Total: -18.69 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.06 Total: -37.73 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.27 Total: -7.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.97 -7.59 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.597 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds