Wall clock time and date at job start Tue Mar 31 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47113 * 175.00262 * 4 3 2 6 6 N 1.46900 * 109.47172 * 294.99671 * 4 3 2 7 7 C 1.46899 * 111.00681 * 275.00444 * 6 4 3 8 8 C 1.52994 * 109.47420 * 179.97438 * 7 6 4 9 9 H 1.08997 * 109.46957 * 304.99859 * 8 7 6 10 10 C 1.53000 * 109.47026 * 65.00110 * 8 7 6 11 11 C 1.52999 * 109.46991 * 184.99917 * 8 7 6 12 12 C 1.50708 * 109.47123 * 174.99896 * 11 8 7 13 13 H 1.07993 * 119.99631 * 359.97438 * 12 11 8 14 14 C 1.37872 * 119.99840 * 180.02562 * 12 11 8 15 15 N 1.31515 * 119.99732 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00281 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47247 * 90.00182 * 16 14 12 18 18 H 1.48500 * 109.47405 * 209.99829 * 16 14 12 19 19 H 1.48496 * 109.47555 * 330.00335 * 16 14 12 20 20 C 1.50693 * 109.47251 * 55.00282 * 4 3 2 21 21 C 1.34508 * 125.79304 * 99.71846 * 20 4 3 22 22 C 1.41378 * 106.84334 * 179.88776 * 21 20 4 23 23 C 1.34508 * 106.84202 * 0.37088 * 22 21 20 24 24 C 1.50697 * 125.79399 * 179.75238 * 23 22 21 25 25 O 1.34307 * 108.42038 * 359.76891 * 23 22 21 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 30 30 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 31 31 H 1.00900 * 110.99953 * 151.04100 * 6 4 3 32 32 H 1.09000 * 109.46831 * 300.00297 * 7 6 4 33 33 H 1.09005 * 109.47083 * 59.99320 * 7 6 4 34 34 H 1.08997 * 109.46946 * 299.99357 * 10 8 7 35 35 H 1.08997 * 109.47458 * 60.00055 * 10 8 7 36 36 H 1.08999 * 109.46830 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47185 * 294.99985 * 11 8 7 38 38 H 1.09005 * 109.47486 * 54.99941 * 11 8 7 39 39 H 0.97004 * 119.99754 * 179.97438 * 15 14 12 40 40 H 1.08005 * 126.58148 * 0.02562 * 21 20 4 41 41 H 1.08005 * 126.58247 * 180.12152 * 22 21 20 42 42 H 1.09002 * 109.47378 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47276 * 299.99842 * 24 23 22 44 44 H 1.08995 * 109.47242 * 59.99459 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 -0.0902 6 7 3.9779 0.5623 1.2543 7 6 4.1207 1.5656 2.3178 8 6 4.5812 0.8810 3.6063 9 1 3.8898 0.0768 3.8575 10 6 5.9835 0.3034 3.4037 11 6 4.6102 1.9030 4.7445 12 6 4.9444 1.2051 6.0378 13 1 5.1184 0.1394 6.0469 14 6 5.0271 1.9273 7.2093 15 7 5.3183 1.3183 8.3380 16 14 4.7255 3.7707 7.1936 17 1 3.2827 4.0382 7.4218 18 1 5.5239 4.4122 8.2689 19 1 5.1299 4.3273 5.8776 20 6 3.9714 0.3329 -1.1648 21 6 4.4442 0.7879 -2.3390 22 6 4.7303 -0.3465 -3.1327 23 6 4.4075 -1.4268 -2.3992 24 6 4.5384 -2.8621 -2.8393 25 8 3.9484 -1.0093 -1.2081 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 4.8378 0.0515 1.1211 32 1 4.8581 2.3103 2.0181 33 1 3.1609 2.0530 2.4888 34 1 5.9628 -0.4247 2.5929 35 1 6.6750 1.1076 3.1525 36 1 6.3113 -0.1848 4.3215 37 1 5.3658 2.6598 4.5342 38 1 3.6333 2.3789 4.8305 39 1 5.3769 1.8264 9.1622 40 1 4.5813 1.8216 -2.6206 41 1 5.1277 -0.3458 -4.1370 42 1 4.2011 -3.5200 -2.0382 43 1 3.9268 -3.0274 -3.7263 44 1 5.5813 -3.0772 -3.0718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602563696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:53 Heat of formation + Delta-G solvation = -42.600014 kcal Electronic energy + Delta-G solvation = -22364.450594 eV Core-core repulsion = 19090.362020 eV Total energy + Delta-G solvation = -3274.088574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.58023 -38.29867 -36.79769 -34.52032 -33.14702 -32.39577 -31.51294 -29.40256 -27.32421 -26.91406 -25.59132 -25.29734 -22.59008 -21.67957 -21.36012 -19.98454 -19.05077 -17.27640 -16.62344 -16.49777 -16.26854 -15.61323 -15.14383 -14.84709 -14.54258 -14.22666 -13.89631 -13.54081 -13.26253 -13.20688 -13.02687 -12.79895 -12.72910 -12.41106 -12.09991 -11.97718 -11.91179 -11.71720 -11.59833 -11.14084 -10.97986 -10.68895 -10.37420 -9.89361 -9.87423 -9.64681 -9.60614 -9.44566 -9.03910 -8.49531 -8.31048 -8.24011 -5.99658 -3.96435 1.70635 2.54308 2.88739 3.32466 3.39861 3.43034 3.76447 4.20861 4.48497 4.48739 4.83746 4.97495 5.00744 5.13578 5.26158 5.27988 5.30175 5.33643 5.36015 5.39622 5.49095 5.56626 5.62382 5.66776 5.68289 5.76247 5.88951 5.97580 6.09996 6.14768 6.37651 6.47691 6.48397 6.77768 6.99267 7.07086 7.12277 7.17533 7.31667 7.34190 7.49988 7.58967 7.84994 8.60193 9.06543 9.63159 11.13871 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.003623 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.398692 B = 7726.715251 C = 8197.105700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.074 3.926 4 C 0.168 3.832 5 H 0.085 0.915 6 N -0.672 5.672 7 C 0.059 3.941 8 C -0.074 4.074 9 H 0.073 0.927 10 C -0.136 4.136 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.267 1.267 20 C 0.005 3.995 21 C -0.215 4.215 22 C -0.218 4.218 23 C -0.017 4.017 24 C -0.073 4.073 25 O -0.144 6.144 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.347 0.653 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.014 0.986 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -1.948 -24.511 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.004 4.004 4 C 0.058 3.942 5 H 0.102 0.898 6 N -0.305 5.305 7 C -0.069 4.069 8 C -0.093 4.093 9 H 0.091 0.909 10 C -0.193 4.193 11 C -0.046 4.046 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.047 4.047 21 C -0.235 4.235 22 C -0.237 4.237 23 C -0.068 4.068 24 C -0.129 4.129 25 O -0.039 6.039 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.409 -2.463 -23.886 24.615 hybrid contribution 0.476 1.946 -0.318 2.029 sum -4.933 -0.516 -24.205 24.708 Atomic orbital electron populations 1.22707 0.81923 1.02504 0.99421 1.88050 1.18578 1.26450 1.95159 1.22568 0.92109 0.85755 0.99973 1.20212 0.94399 0.93927 0.85693 0.89780 1.60540 1.38530 1.27303 1.04131 1.22295 0.99888 0.92778 0.91963 1.21008 0.96586 0.99100 0.92600 0.90854 1.21747 0.96877 0.99518 1.01186 1.19603 0.96034 0.94765 0.94173 1.21138 1.47002 0.96525 0.90327 0.90793 1.25030 0.94860 0.98183 0.95549 1.69919 1.49705 1.36001 0.98848 0.86803 0.78376 0.86395 0.77817 1.20400 1.21525 1.19136 1.22160 1.03897 0.81085 0.97539 1.21512 1.07559 1.00037 0.94365 1.21447 1.08981 0.91580 1.01688 1.22479 1.02358 0.97142 0.84796 1.20273 1.03102 0.87791 1.01783 1.84101 1.64400 1.21783 1.33577 0.89875 0.94116 0.94839 0.93414 0.92197 0.83226 0.95599 0.91396 0.94675 0.94083 0.91276 0.96805 0.97158 0.92855 0.83834 0.83869 0.90443 0.89986 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.36 -5.22 10.02 -35.23 -0.35 -5.58 16 3 C 0.07 0.92 5.68 37.16 0.21 1.13 16 4 C 0.17 2.17 2.87 -68.87 -0.20 1.97 16 5 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 6 N -0.67 -10.19 6.24 -107.96 -0.67 -10.87 16 7 C 0.06 0.97 4.94 -3.83 -0.02 0.95 16 8 C -0.07 -1.48 2.55 -90.62 -0.23 -1.71 16 9 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 10 C -0.14 -2.56 8.77 37.16 0.33 -2.23 16 11 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 12 C -0.51 -14.55 8.96 -34.44 -0.31 -14.86 16 13 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 16 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 20 C 0.00 0.06 5.36 -35.63 -0.19 -0.13 16 21 C -0.21 -2.55 10.80 -39.71 -0.43 -2.97 16 22 C -0.22 -2.44 10.81 -39.71 -0.43 -2.87 16 23 C -0.02 -0.20 7.32 -35.63 -0.26 -0.46 16 24 C -0.07 -0.58 10.42 36.00 0.38 -0.20 16 25 O -0.14 -2.10 10.52 5.69 0.06 -2.04 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.74 7.36 -51.93 -0.38 0.35 16 31 H 0.35 5.32 6.60 -39.29 -0.26 5.07 16 32 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.07 1.09 7.36 -51.93 -0.38 0.71 16 34 H 0.03 0.57 6.68 -51.93 -0.35 0.23 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 37 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -32.65 358.01 -7.23 -39.88 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.52 Total: 1.81 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.24 Total: -18.43 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.10 Total: -38.23 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.29 Total: -7.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.65 -7.23 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.721 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds