Wall clock time and date at job start Tue Mar 31 2020 07:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00206 * 2 1 4 4 C 1.53000 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46945 * 184.99908 * 4 3 2 6 6 N 1.46905 * 109.46838 * 65.00199 * 4 3 2 7 7 C 1.46898 * 111.00294 * 85.00100 * 6 4 3 8 8 C 1.52995 * 109.47322 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.46727 * 55.00186 * 8 7 6 10 10 C 1.52995 * 109.47276 * 295.00147 * 8 7 6 11 11 C 1.52998 * 109.47195 * 174.99890 * 8 7 6 12 12 C 1.50703 * 109.47072 * 185.00265 * 11 8 7 13 13 H 1.07995 * 119.99824 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99871 * 180.02562 * 12 11 8 15 15 N 1.31518 * 119.99809 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99864 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46824 * 89.99911 * 16 14 12 18 18 H 1.48493 * 109.47245 * 209.99910 * 16 14 12 19 19 H 1.48502 * 109.47409 * 330.00193 * 16 14 12 20 20 C 1.50695 * 109.47301 * 305.00183 * 4 3 2 21 21 C 1.34515 * 125.78599 * 259.99929 * 20 4 3 22 22 C 1.41388 * 106.83843 * 180.02562 * 21 20 4 23 23 C 1.34506 * 106.83998 * 359.97438 * 22 21 20 24 24 C 1.50708 * 125.79179 * 179.97438 * 23 22 21 25 25 O 1.34304 * 125.79068 * 80.03916 * 20 4 3 26 26 H 1.08993 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46916 * 300.00229 * 1 2 3 28 28 H 1.09000 * 109.47183 * 59.99603 * 1 2 3 29 29 H 1.09005 * 109.47160 * 60.00160 * 3 2 1 30 30 H 1.08996 * 109.47195 * 300.00230 * 3 2 1 31 31 H 1.00902 * 110.99666 * 208.95318 * 6 4 3 32 32 H 1.09007 * 109.47030 * 300.00077 * 7 6 4 33 33 H 1.09002 * 109.47059 * 59.99713 * 7 6 4 34 34 H 1.08997 * 109.47226 * 180.02562 * 10 8 7 35 35 H 1.09011 * 109.46958 * 299.99880 * 10 8 7 36 36 H 1.08995 * 109.47234 * 59.99382 * 10 8 7 37 37 H 1.09007 * 109.47409 * 304.99958 * 11 8 7 38 38 H 1.08999 * 109.47136 * 64.99767 * 11 8 7 39 39 H 0.96998 * 119.99871 * 179.97438 * 15 14 12 40 40 H 1.08001 * 126.58408 * 359.77293 * 21 20 4 41 41 H 1.08000 * 126.57885 * 180.02562 * 22 21 20 42 42 H 1.08990 * 109.47315 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.46860 * 300.01835 * 24 23 22 44 44 H 1.09000 * 109.47092 * 60.01199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2544 7 6 4.1207 1.5656 -2.3178 8 6 4.5824 0.8812 -3.6060 9 1 3.8915 0.0766 -3.8575 10 6 5.9847 0.3043 -3.4026 11 6 4.6114 1.9031 -4.7442 12 6 4.9468 1.2054 -6.0372 13 1 5.1221 0.1398 -6.0461 14 6 5.0307 1.9277 -7.2087 15 7 4.8176 3.2255 -7.1978 16 14 5.4472 1.0630 -8.8113 17 1 4.1950 0.6122 -9.4703 18 1 6.1679 2.0022 -9.7077 19 1 6.3095 -0.1128 -8.5298 20 6 3.9714 0.3328 1.1648 21 6 4.4492 0.7878 2.3370 22 6 4.7314 -0.3467 3.1323 23 6 4.4086 -1.4269 2.3987 24 6 4.5413 -2.8624 2.8380 25 8 3.9495 -1.0094 1.2076 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 4.8378 0.0515 -1.1212 32 1 3.1609 2.0531 -2.4888 33 1 4.8581 2.3102 -2.0181 34 1 6.3138 -0.1829 -4.3205 35 1 6.6757 1.1090 -3.1510 36 1 5.9641 -0.4237 -2.5917 37 1 3.6342 2.3785 -4.8308 38 1 5.3664 2.6604 -4.5335 39 1 4.8771 3.7337 -8.0218 40 1 4.5938 1.8212 2.6156 41 1 5.1289 -0.3460 4.1364 42 1 4.2045 -3.5201 2.0369 43 1 5.5847 -3.0766 3.0693 44 1 3.9309 -3.0286 3.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602563697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:00 Heat of formation + Delta-G solvation = -46.408001 kcal Electronic energy + Delta-G solvation = -22311.765573 eV Core-core repulsion = 19037.511873 eV Total energy + Delta-G solvation = -3274.253701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.54440 -38.23111 -36.69658 -34.42880 -33.11447 -32.41262 -31.43015 -29.22589 -26.95006 -26.72681 -25.54275 -25.23919 -22.80889 -21.64840 -21.44430 -19.94080 -19.00510 -17.13363 -16.45199 -16.32411 -16.17111 -15.56365 -15.05077 -14.81920 -14.51244 -14.17065 -14.08016 -13.42281 -13.20330 -13.16337 -12.88199 -12.74513 -12.61906 -12.33300 -12.06001 -11.94262 -11.68163 -11.59401 -11.33510 -11.07723 -10.87131 -10.71803 -10.31612 -10.17980 -9.83784 -9.70048 -9.55026 -9.13865 -8.95204 -8.30877 -8.27241 -8.15858 -5.95828 -3.96592 1.74229 2.57866 2.92386 3.34939 3.41042 3.44619 3.81865 4.27873 4.50906 4.53090 4.87103 5.01441 5.06554 5.17836 5.29254 5.31368 5.34791 5.40078 5.42424 5.45084 5.52664 5.61134 5.70133 5.74958 5.79695 5.80257 5.93285 6.08671 6.14058 6.25492 6.47379 6.51912 6.58422 6.93257 7.13635 7.18707 7.21016 7.23145 7.42491 7.62918 7.71872 7.88123 8.04638 8.48866 9.09713 9.66700 11.15754 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003444 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.809963 B = 8127.153002 C = 8605.681377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.074 3.926 4 C 0.167 3.833 5 H 0.085 0.915 6 N -0.673 5.673 7 C 0.062 3.938 8 C -0.083 4.083 9 H 0.067 0.933 10 C -0.134 4.134 11 C 0.029 3.971 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.006 3.994 21 C -0.216 4.216 22 C -0.217 4.217 23 C -0.018 4.018 24 C -0.073 4.073 25 O -0.144 6.144 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.346 0.654 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -6.177 21.642 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.004 4.004 4 C 0.057 3.943 5 H 0.103 0.897 6 N -0.306 5.306 7 C -0.067 4.067 8 C -0.102 4.102 9 H 0.085 0.915 10 C -0.192 4.192 11 C -0.009 4.009 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.045 4.045 21 C -0.236 4.236 22 C -0.237 4.237 23 C -0.069 4.069 24 C -0.129 4.129 25 O -0.039 6.039 26 H 0.101 0.899 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.296 -6.570 21.093 22.506 hybrid contribution 0.849 0.606 -0.466 1.142 sum -3.447 -5.964 20.627 21.747 Atomic orbital electron populations 1.22698 0.81981 1.02424 0.99444 1.88042 1.18536 1.26538 1.95167 1.22575 0.92115 0.85690 1.00029 1.20222 0.94396 0.93937 0.85708 0.89740 1.60582 1.38381 1.27470 1.04142 1.22271 0.99970 0.92651 0.91769 1.21202 0.95905 0.99540 0.93520 0.91466 1.21742 0.97366 0.99413 1.00654 1.19108 0.96997 0.93401 0.91383 1.21247 1.46823 0.94425 0.92514 0.92541 1.25019 0.95655 0.94825 0.99067 1.69967 1.50336 1.06065 1.27387 0.86626 0.78463 0.79411 0.83699 1.20727 1.21356 1.19900 1.22195 1.03714 0.81042 0.97583 1.21522 1.07555 1.00052 0.94429 1.21446 1.08961 0.91600 1.01648 1.22468 1.02536 0.97117 0.84810 1.20266 1.03060 0.87814 1.01759 1.84098 1.64442 1.21826 1.33532 0.89948 0.94862 0.94091 0.93429 0.92094 0.83417 0.91354 0.95611 0.91807 0.94040 0.94938 0.96692 0.96747 0.93133 0.83806 0.83890 0.90488 0.89947 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.36 -5.38 10.03 -35.23 -0.35 -5.73 16 3 C 0.07 0.96 5.68 37.16 0.21 1.17 16 4 C 0.17 2.27 2.87 -68.86 -0.20 2.07 16 5 H 0.09 1.01 7.79 -51.93 -0.40 0.61 16 6 N -0.67 -10.65 6.24 -107.95 -0.67 -11.32 16 7 C 0.06 1.07 4.94 -3.83 -0.02 1.05 16 8 C -0.08 -1.72 2.54 -90.63 -0.23 -1.95 16 9 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 10 C -0.13 -2.58 8.77 37.15 0.33 -2.25 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 12 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 13 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.01 0.08 5.36 -35.63 -0.19 -0.11 16 21 C -0.22 -2.64 10.80 -39.70 -0.43 -3.07 16 22 C -0.22 -2.50 10.81 -39.70 -0.43 -2.93 16 23 C -0.02 -0.22 7.32 -35.62 -0.26 -0.48 16 24 C -0.07 -0.59 10.42 36.01 0.38 -0.21 16 25 O -0.14 -2.15 10.52 5.70 0.06 -2.09 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.80 7.36 -51.93 -0.38 0.42 16 31 H 0.35 5.50 6.60 -39.29 -0.26 5.24 16 32 H 0.07 1.20 7.36 -51.92 -0.38 0.82 16 33 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 35 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -32.11 361.61 -7.60 -39.71 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.56 Total: 1.35 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.24 Total: -17.87 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.06 Total: -37.66 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.29 Total: -7.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.11 -7.60 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.696 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds