Wall clock time and date at job start Tue Mar 31 2020 07:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00206 * 2 1 4 4 C 1.53000 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46945 * 184.99908 * 4 3 2 6 6 N 1.46905 * 109.46838 * 65.00199 * 4 3 2 7 7 C 1.46898 * 111.00294 * 85.00100 * 6 4 3 8 8 C 1.52995 * 109.47322 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.46727 * 55.00186 * 8 7 6 10 10 C 1.52995 * 109.47276 * 295.00147 * 8 7 6 11 11 C 1.52998 * 109.47195 * 174.99890 * 8 7 6 12 12 C 1.50703 * 109.47072 * 185.00265 * 11 8 7 13 13 H 1.07995 * 119.99824 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99871 * 180.02562 * 12 11 8 15 15 N 1.31518 * 119.99809 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99864 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46824 * 89.99911 * 16 14 12 18 18 H 1.48493 * 109.47245 * 209.99910 * 16 14 12 19 19 H 1.48502 * 109.47409 * 330.00193 * 16 14 12 20 20 C 1.50695 * 109.47301 * 305.00183 * 4 3 2 21 21 C 1.34515 * 125.78599 * 259.99929 * 20 4 3 22 22 C 1.41388 * 106.83843 * 180.02562 * 21 20 4 23 23 C 1.34506 * 106.83998 * 359.97438 * 22 21 20 24 24 C 1.50708 * 125.79179 * 179.97438 * 23 22 21 25 25 O 1.34304 * 125.79068 * 80.03916 * 20 4 3 26 26 H 1.08993 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46916 * 300.00229 * 1 2 3 28 28 H 1.09000 * 109.47183 * 59.99603 * 1 2 3 29 29 H 1.09005 * 109.47160 * 60.00160 * 3 2 1 30 30 H 1.08996 * 109.47195 * 300.00230 * 3 2 1 31 31 H 1.00902 * 110.99666 * 208.95318 * 6 4 3 32 32 H 1.09007 * 109.47030 * 300.00077 * 7 6 4 33 33 H 1.09002 * 109.47059 * 59.99713 * 7 6 4 34 34 H 1.08997 * 109.47226 * 180.02562 * 10 8 7 35 35 H 1.09011 * 109.46958 * 299.99880 * 10 8 7 36 36 H 1.08995 * 109.47234 * 59.99382 * 10 8 7 37 37 H 1.09007 * 109.47409 * 304.99958 * 11 8 7 38 38 H 1.08999 * 109.47136 * 64.99767 * 11 8 7 39 39 H 0.96998 * 119.99871 * 179.97438 * 15 14 12 40 40 H 1.08001 * 126.58408 * 359.77293 * 21 20 4 41 41 H 1.08000 * 126.57885 * 180.02562 * 22 21 20 42 42 H 1.08990 * 109.47315 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.46860 * 300.01835 * 24 23 22 44 44 H 1.09000 * 109.47092 * 60.01199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2544 7 6 4.1207 1.5656 -2.3178 8 6 4.5824 0.8812 -3.6060 9 1 3.8915 0.0766 -3.8575 10 6 5.9847 0.3043 -3.4026 11 6 4.6114 1.9031 -4.7442 12 6 4.9468 1.2054 -6.0372 13 1 5.1221 0.1398 -6.0461 14 6 5.0307 1.9277 -7.2087 15 7 4.8176 3.2255 -7.1978 16 14 5.4472 1.0630 -8.8113 17 1 4.1950 0.6122 -9.4703 18 1 6.1679 2.0022 -9.7077 19 1 6.3095 -0.1128 -8.5298 20 6 3.9714 0.3328 1.1648 21 6 4.4492 0.7878 2.3370 22 6 4.7314 -0.3467 3.1323 23 6 4.4086 -1.4269 2.3987 24 6 4.5413 -2.8624 2.8380 25 8 3.9495 -1.0094 1.2076 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 4.8378 0.0515 -1.1212 32 1 3.1609 2.0531 -2.4888 33 1 4.8581 2.3102 -2.0181 34 1 6.3138 -0.1829 -4.3205 35 1 6.6757 1.1090 -3.1510 36 1 5.9641 -0.4237 -2.5917 37 1 3.6342 2.3785 -4.8308 38 1 5.3664 2.6604 -4.5335 39 1 4.8771 3.7337 -8.0218 40 1 4.5938 1.8212 2.6156 41 1 5.1289 -0.3460 4.1364 42 1 4.2045 -3.5201 2.0369 43 1 5.5847 -3.0766 3.0693 44 1 3.9309 -3.0286 3.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602563697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:59 Heat of formation + Delta-G solvation = -66.780303 kcal Electronic energy + Delta-G solvation = -22312.648983 eV Core-core repulsion = 19037.511873 eV Total energy + Delta-G solvation = -3275.137110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.47126 -39.34946 -38.05753 -35.96278 -34.26665 -33.99597 -32.52146 -30.43711 -28.66879 -27.81966 -26.74573 -26.45356 -24.54918 -22.63834 -22.55774 -20.94313 -20.62932 -18.59441 -18.06010 -17.45018 -17.21578 -16.58830 -16.49680 -16.14768 -15.85711 -15.49322 -15.31634 -14.66907 -14.43596 -14.25638 -13.89617 -13.82834 -13.64448 -13.60092 -13.35309 -13.22650 -12.98999 -12.86641 -12.76842 -12.55383 -12.50266 -12.24649 -12.06472 -11.87435 -11.51229 -11.07356 -10.96552 -10.73763 -10.53333 -10.52331 -9.39824 -9.16631 -8.16918 -6.25499 0.81872 1.40528 1.41365 1.52359 1.70076 2.05531 2.42591 2.85728 3.12690 3.16584 3.63420 4.02392 4.06888 4.17349 4.19817 4.26451 4.32187 4.43193 4.46575 4.50147 4.56597 4.60180 4.63841 4.74756 4.75769 4.84818 4.85581 4.90194 4.93718 5.03065 5.08973 5.23425 5.31408 5.37341 5.47143 5.55591 5.68864 5.79601 5.89799 5.97951 6.26985 6.30839 6.35926 6.46640 6.89968 7.42455 8.95071 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003444 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.809963 B = 8127.153002 C = 8605.681377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.072 3.928 4 C 0.167 3.833 5 H 0.101 0.899 6 N -0.678 5.678 7 C 0.076 3.924 8 C -0.074 4.074 9 H 0.052 0.948 10 C -0.126 4.126 11 C 0.035 3.965 12 C -0.529 4.529 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.960 3.040 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.018 4.018 21 C -0.213 4.213 22 C -0.225 4.225 23 C -0.030 4.030 24 C -0.072 4.072 25 O -0.172 6.172 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.345 0.655 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.059 0.941 37 H -0.012 1.012 38 H -0.007 1.007 39 H 0.262 0.738 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -7.128 23.043 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C -0.005 4.005 4 C 0.057 3.943 5 H 0.119 0.881 6 N -0.311 5.311 7 C -0.052 4.052 8 C -0.093 4.093 9 H 0.071 0.929 10 C -0.183 4.183 11 C -0.002 4.002 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.785 3.215 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.069 4.069 21 C -0.233 4.233 22 C -0.244 4.244 23 C -0.080 4.080 24 C -0.128 4.128 25 O -0.068 6.068 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.007 0.993 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.181 0.819 41 H 0.185 0.815 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.896 -7.529 22.512 24.056 hybrid contribution 0.690 0.892 -0.821 1.395 sum -3.206 -6.637 21.691 22.909 Atomic orbital electron populations 1.22841 0.80529 1.03262 1.00284 1.87998 1.20296 1.27544 1.95362 1.22645 0.91841 0.85341 1.00700 1.20310 0.94791 0.94599 0.84584 0.88120 1.60489 1.38322 1.27211 1.05067 1.21967 0.99721 0.92688 0.90869 1.20988 0.96889 0.97855 0.93581 0.92929 1.21636 0.96054 0.99897 1.00735 1.18980 0.94584 0.93834 0.92825 1.21639 1.46628 0.94721 0.93771 0.92344 1.25921 0.95479 0.95531 1.02901 1.70093 1.51307 1.07612 1.28494 0.85527 0.78491 0.78475 0.79053 1.20003 1.20814 1.18851 1.22235 1.05463 0.80981 0.98219 1.21857 1.06232 1.01288 0.93900 1.21799 1.08864 0.91086 1.02645 1.23256 1.01715 0.99007 0.84058 1.20443 1.04647 0.85490 1.02239 1.84072 1.65292 1.22452 1.35021 0.89208 0.93117 0.94087 0.91307 0.92733 0.83509 0.91826 0.94929 0.93604 0.93739 0.92238 0.99326 0.98859 0.92933 0.81930 0.81481 0.90916 0.88108 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.83 16 2 O -0.39 -11.39 10.03 -148.98 -1.49 -12.89 16 3 C 0.07 1.82 5.68 71.98 0.41 2.23 16 4 C 0.17 4.36 2.87 44.17 0.13 4.49 16 5 H 0.10 2.27 7.79 -2.38 -0.02 2.25 16 6 N -0.68 -21.11 6.24 -495.44 -3.09 -24.21 16 7 C 0.08 2.65 4.94 86.30 0.43 3.08 16 8 C -0.07 -3.12 2.54 -10.80 -0.03 -3.15 16 9 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 10 C -0.13 -4.78 8.77 71.98 0.63 -4.15 16 11 C 0.04 1.87 4.45 29.85 0.13 2.00 16 12 C -0.53 -30.36 8.41 25.60 0.22 -30.15 16 13 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 14 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 16 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.02 -0.48 5.36 24.83 0.13 -0.35 16 21 C -0.21 -4.80 10.80 22.19 0.24 -4.56 16 22 C -0.23 -4.67 10.81 22.19 0.24 -4.43 16 23 C -0.03 -0.67 7.32 24.83 0.18 -0.49 16 24 C -0.07 -1.02 10.42 71.24 0.74 -0.28 16 25 O -0.17 -5.00 10.52 -2.51 -0.03 -5.02 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.05 1.41 7.36 -2.39 -0.02 1.40 16 31 H 0.34 10.70 6.60 -89.69 -0.59 10.11 16 32 H 0.06 2.26 7.36 -2.38 -0.02 2.24 16 33 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 34 H 0.04 1.88 6.95 -2.39 -0.02 1.87 16 35 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.06 1.93 6.68 -2.39 -0.02 1.91 16 37 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.53 361.61 3.23 -66.30 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.37 Total: 19.33 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 5.16 Total: -33.53 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.81 Total: -81.24 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.52 Total: -17.91 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.53 3.23 -66.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.479 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds