Wall clock time and date at job start Tue Mar 31 2020 05:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48506 * 109.47438 * 244.72545 * 3 2 1 5 5 H 1.48501 * 109.46923 * 4.72551 * 3 2 1 6 6 H 1.48503 * 109.47334 * 124.72610 * 3 2 1 7 7 C 1.37883 * 120.00109 * 179.72841 * 2 1 3 8 8 H 1.07995 * 119.99959 * 189.95523 * 7 2 1 9 9 C 1.50697 * 119.99831 * 9.95824 * 7 2 1 10 10 C 1.53005 * 115.54999 * 39.47850 * 9 7 2 11 11 N 1.46905 * 109.46914 * 54.09156 * 10 9 7 12 12 C 1.47010 * 111.00014 * 51.03207 * 11 10 9 13 13 C 1.53101 * 109.27686 * 182.43410 * 12 11 10 14 14 O 1.43038 * 109.23673 * 303.08778 * 13 12 11 15 15 C 1.42916 * 113.74860 * 58.54065 * 14 13 12 16 16 C 1.53080 * 109.52569 * 61.66232 * 15 14 13 17 17 C 1.53111 * 109.15654 * 63.04779 * 16 15 14 18 18 O 1.42893 * 109.41074 * 57.48333 * 17 16 15 19 19 C 1.42908 * 114.14330 * 298.84018 * 18 17 16 20 20 C 1.53085 * 109.51790 * 181.38403 * 15 14 13 21 21 C 1.47026 * 110.99680 * 174.66311 * 11 10 9 22 22 C 1.53004 * 117.49669 * 253.77325 * 9 7 2 23 23 C 1.52994 * 117.49909 * 185.15221 * 9 7 2 24 24 H 0.96999 * 119.99958 * 5.22079 * 1 2 3 25 25 H 1.08999 * 109.46944 * 174.08934 * 10 9 7 26 26 H 1.08997 * 109.47438 * 294.09186 * 10 9 7 27 27 H 1.09008 * 109.50533 * 302.37530 * 12 11 10 28 28 H 1.08999 * 109.50691 * 62.49435 * 12 11 10 29 29 H 1.08993 * 109.51282 * 183.15464 * 13 12 11 30 30 H 1.09000 * 109.50893 * 63.01321 * 13 12 11 31 31 H 1.09005 * 109.52339 * 182.94834 * 16 15 14 32 32 H 1.08993 * 109.52783 * 303.14122 * 16 15 14 33 33 H 1.09004 * 109.47721 * 297.50394 * 17 16 15 34 34 H 1.08994 * 109.48487 * 177.47143 * 17 16 15 35 35 H 1.09001 * 109.48151 * 301.19365 * 19 18 17 36 36 H 1.08992 * 109.48846 * 181.14834 * 19 18 17 37 37 H 1.09007 * 109.52115 * 56.86122 * 20 15 14 38 38 H 1.09002 * 109.52460 * 176.99085 * 20 15 14 39 39 H 1.08998 * 109.50968 * 297.70136 * 21 11 10 40 40 H 1.08998 * 109.51078 * 57.82622 * 21 11 10 41 41 H 1.08996 * 117.49847 * 0.02562 * 22 9 7 42 42 H 1.09001 * 117.49303 * 145.02125 * 22 9 7 43 43 H 1.09004 * 117.49854 * 214.98183 * 23 9 7 44 44 H 1.09001 * 117.49902 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0144 1.7476 -1.2661 5 1 1.2883 2.7440 0.1153 6 1 3.1874 1.6476 1.1507 7 6 2.0046 -1.1941 0.0057 8 1 3.0723 -1.2003 0.1674 9 6 1.2681 -2.4904 -0.2139 10 6 0.1612 -2.4499 -1.2695 11 7 0.7088 -1.9404 -2.5338 12 6 1.9263 -2.6718 -2.9134 13 6 2.4964 -2.0705 -4.2009 14 8 1.4980 -2.1151 -5.2242 15 6 0.2978 -1.4159 -4.8882 16 6 0.6127 0.0665 -4.6718 17 6 1.1311 0.6664 -5.9816 18 8 0.1562 0.4777 -7.0091 19 6 -0.1417 -0.8919 -7.2878 20 6 -0.7118 -1.5544 -6.0306 21 6 -0.2942 -2.0060 -3.6068 22 6 1.0537 -3.3955 1.0009 23 6 2.0663 -3.7883 -0.0766 24 1 -0.4850 0.8366 -0.0764 25 1 -0.2317 -3.4550 -1.4226 26 1 -0.6405 -1.7940 -0.9303 27 1 2.6642 -2.5893 -2.1154 28 1 1.6837 -3.7215 -3.0784 29 1 3.3672 -2.6450 -4.5165 30 1 2.7878 -1.0356 -4.0214 31 1 -0.2927 0.5901 -4.3645 32 1 1.3737 0.1681 -3.8982 33 1 2.0595 0.1709 -6.2659 34 1 1.3146 1.7321 -5.8458 35 1 0.7698 -1.4081 -7.5893 36 1 -0.8746 -0.9481 -8.0926 37 1 -0.8966 -2.6105 -6.2273 38 1 -1.6460 -1.0667 -5.7524 39 1 -0.5742 -3.0450 -3.7803 40 1 -1.1758 -1.4346 -3.3165 41 1 1.4449 -3.0532 1.9589 42 1 0.1238 -3.9623 1.0482 43 1 1.8027 -4.6136 -0.7382 44 1 3.1243 -3.7047 0.1720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602785016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:40 Heat of formation + Delta-G solvation = -54.397275 kcal Electronic energy + Delta-G solvation = -24510.999918 eV Core-core repulsion = 21236.399777 eV Total energy + Delta-G solvation = -3274.600142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26938 -37.96992 -36.72880 -34.06249 -32.89338 -32.03742 -30.92914 -28.82773 -27.14538 -25.43440 -23.69005 -23.59574 -23.05228 -21.16414 -20.64038 -18.91753 -18.86174 -16.55498 -16.13416 -15.83036 -15.43774 -15.28441 -14.71596 -14.55225 -14.44603 -14.16767 -13.86646 -13.72622 -12.96922 -12.69957 -12.51298 -12.15851 -12.13217 -11.68471 -11.44374 -11.33775 -11.09564 -10.96072 -10.85295 -10.74180 -10.54849 -10.44906 -10.16411 -10.07573 -9.92557 -9.43241 -9.38708 -9.04803 -8.89191 -8.57946 -8.00008 -7.28819 -5.96112 -3.97785 3.33195 3.38709 3.41495 4.00668 4.07710 4.45390 4.55430 5.00909 5.03359 5.09153 5.14257 5.24033 5.45484 5.57206 5.57497 5.63085 5.72813 5.74417 5.79723 5.85424 5.92048 5.97491 6.03161 6.10664 6.13311 6.24166 6.27208 6.36422 6.49488 6.53420 6.63376 6.65231 6.66527 6.73321 6.93024 7.12837 7.31206 7.36300 7.55097 7.59427 7.97194 8.03856 8.11413 8.48750 8.95865 9.63320 11.08518 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.007093 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.906275 B = 3946.663142 C = 4752.365538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.091 3.909 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.480 4.480 8 H 0.054 0.946 9 C 0.064 3.936 10 C 0.103 3.897 11 N -0.494 5.494 12 C 0.024 3.976 13 C 0.061 3.939 14 O -0.383 6.383 15 C 0.125 3.875 16 C -0.169 4.169 17 C 0.064 3.936 18 O -0.389 6.389 19 C 0.067 3.933 20 C -0.140 4.140 21 C 0.036 3.964 22 C -0.202 4.202 23 C -0.218 4.218 24 H 0.259 0.741 25 H -0.014 1.014 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.019 0.981 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.025 0.975 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -2.517 -10.820 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.113 4.113 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.063 3.937 10 C -0.024 4.024 11 N -0.218 5.218 12 C -0.105 4.105 13 C -0.016 4.016 14 O -0.303 6.303 15 C 0.085 3.915 16 C -0.206 4.206 17 C -0.012 4.012 18 O -0.308 6.308 19 C -0.010 4.010 20 C -0.178 4.178 21 C -0.093 4.093 22 C -0.241 4.241 23 C -0.256 4.256 24 H 0.069 0.931 25 H 0.004 0.996 26 H 0.132 0.868 27 H 0.122 0.878 28 H 0.037 0.963 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.247 -1.823 -10.945 11.098 hybrid contribution 0.346 -0.291 0.480 0.660 sum 0.099 -2.113 -10.464 10.676 Atomic orbital electron populations 1.69831 1.05947 1.26572 1.48410 1.24694 0.94490 0.98310 0.93771 0.86819 0.79793 0.83776 0.78467 1.20248 1.21481 1.20630 1.20217 0.93002 0.89097 1.49334 0.92819 1.18934 0.93953 0.88772 0.92048 1.21752 0.98834 0.94603 0.87184 1.62050 1.03494 1.54645 1.01605 1.22766 0.95769 0.94179 0.97757 1.22728 0.90202 1.01078 0.87576 1.87873 1.25446 1.74884 1.42092 1.21354 0.85331 0.91334 0.93441 1.22599 1.04110 0.95504 0.98435 1.22563 0.90913 1.00689 0.87060 1.87857 1.61239 1.25195 1.56474 1.22453 0.99855 0.82569 0.96077 1.22154 0.98207 1.01975 0.95428 1.22616 0.96367 0.98458 0.91877 1.22953 0.98278 1.07290 0.95543 1.22977 0.96577 1.01635 1.04379 0.93118 0.99568 0.86807 0.87764 0.96283 0.89534 0.92212 0.90464 0.88557 0.93048 0.89337 0.92632 0.89419 0.90555 0.89871 0.95690 0.90329 0.90391 0.92031 0.91931 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.11 10.95 55.43 0.61 -22.50 16 2 C 0.09 2.36 5.26 -17.82 -0.09 2.27 16 3 Si 0.88 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.48 -12.36 8.05 -34.44 -0.28 -12.64 16 8 H 0.05 1.41 7.83 -52.49 -0.41 0.99 16 9 C 0.06 1.50 1.00 -155.66 -0.16 1.34 16 10 C 0.10 2.33 4.38 -3.82 -0.02 2.31 16 11 N -0.49 -10.11 3.97 -234.36 -0.93 -11.04 16 12 C 0.02 0.45 4.77 -3.71 -0.02 0.43 16 13 C 0.06 1.01 6.62 37.21 0.25 1.25 16 14 O -0.38 -6.36 9.24 -35.23 -0.33 -6.69 16 15 C 0.13 2.01 0.69 -90.54 -0.06 1.94 16 16 C -0.17 -2.78 4.52 -26.63 -0.12 -2.90 16 17 C 0.06 0.94 6.70 37.22 0.25 1.19 16 18 O -0.39 -5.81 10.76 -35.23 -0.38 -6.19 16 19 C 0.07 0.86 6.70 37.22 0.25 1.11 16 20 C -0.14 -1.88 5.15 -26.63 -0.14 -2.01 16 21 C 0.04 0.64 4.36 -3.76 -0.02 0.63 16 22 C -0.20 -4.52 9.96 -26.73 -0.27 -4.79 16 23 C -0.22 -4.59 8.25 -26.74 -0.22 -4.81 16 24 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 25 H -0.01 -0.30 8.07 -51.93 -0.42 -0.72 16 26 H 0.11 2.86 6.09 -51.93 -0.32 2.54 16 27 H 0.10 2.14 5.47 -51.92 -0.28 1.86 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.03 6.44 -51.93 -0.33 0.69 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.10 1.80 6.10 -51.93 -0.32 1.49 16 33 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -26.71 331.99 -9.21 -35.92 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.53 Total: 4.63 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.64 Total: -14.68 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.32 Total: -33.54 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.70 Total: -12.88 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.71 -9.21 -35.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602785016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.477 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds