Wall clock time and date at job start Tue Mar 31 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00279 * 2 1 4 4 H 1.48498 * 109.46971 * 239.99850 * 3 2 1 5 5 H 1.48501 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47238 * 119.99638 * 3 2 1 7 7 C 1.37876 * 119.99459 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99705 * 173.13010 * 7 2 1 9 9 C 1.50694 * 120.00581 * 353.13560 * 7 2 1 10 10 C 1.53001 * 115.54982 * 294.69896 * 9 7 2 11 11 N 1.46899 * 109.47233 * 268.60601 * 10 9 7 12 12 C 1.47009 * 111.00040 * 52.51129 * 11 10 9 13 13 C 1.53100 * 109.25796 * 182.39778 * 12 11 10 14 14 O 1.43018 * 109.29055 * 303.16914 * 13 12 11 15 15 C 1.43016 * 113.73272 * 58.60593 * 14 13 12 16 16 H 1.08994 * 109.51337 * 61.35562 * 15 14 13 17 17 C 1.53010 * 109.50469 * 181.44127 * 15 14 13 18 18 H 1.09003 * 109.82324 * 184.34467 * 17 15 14 19 19 C 1.54384 * 109.82883 * 305.32512 * 17 15 14 20 20 C 1.55563 * 102.27392 * 140.87004 * 19 17 15 21 21 C 1.54943 * 100.82743 * 325.87827 * 20 19 17 22 22 O 1.43240 * 109.82994 * 63.45792 * 17 15 14 23 23 C 1.47014 * 111.00339 * 176.14863 * 11 10 9 24 24 C 1.53009 * 117.51935 * 80.39676 * 9 7 2 25 25 C 1.52998 * 59.99783 * 107.48278 * 24 9 7 26 26 H 0.96997 * 119.99802 * 5.06957 * 1 2 3 27 27 H 1.09003 * 109.46965 * 148.60358 * 10 9 7 28 28 H 1.09003 * 109.47316 * 28.60553 * 10 9 7 29 29 H 1.09000 * 109.50554 * 302.32593 * 12 11 10 30 30 H 1.08999 * 109.50790 * 62.41616 * 12 11 10 31 31 H 1.08999 * 109.51027 * 63.08477 * 13 12 11 32 32 H 1.09005 * 109.50695 * 183.17485 * 13 12 11 33 33 H 1.08998 * 110.84265 * 259.06015 * 19 17 15 34 34 H 1.08995 * 110.84608 * 22.47131 * 19 17 15 35 35 H 1.08999 * 111.22247 * 207.98347 * 20 19 17 36 36 H 1.09006 * 111.13551 * 83.74100 * 20 19 17 37 37 H 1.08998 * 110.31087 * 277.48261 * 21 20 19 38 38 H 1.08995 * 110.31015 * 155.40190 * 21 20 19 39 39 H 1.09005 * 109.50454 * 57.66916 * 23 11 10 40 40 H 1.08997 * 109.53742 * 297.56353 * 23 11 10 41 41 H 1.09001 * 117.49716 * 214.97730 * 24 9 7 42 42 H 1.09003 * 117.49373 * 359.97438 * 24 9 7 43 43 H 1.08997 * 117.50526 * 252.50850 * 25 24 9 44 44 H 1.09004 * 117.49811 * 107.49143 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0787 -1.1976 -0.1113 9 6 1.2591 -2.4944 0.1571 10 6 0.5648 -2.6989 1.5051 11 7 1.4768 -3.3908 2.4257 12 6 2.7718 -2.6994 2.5031 13 6 3.7093 -3.4848 3.4241 14 8 3.0965 -3.6318 4.7079 15 6 1.8331 -4.3009 4.6694 16 1 1.9670 -5.3096 4.2789 17 6 1.2501 -4.3734 6.0823 18 1 0.3247 -4.9492 6.0712 19 6 2.2689 -5.0338 7.0359 20 6 2.1019 -4.1914 8.3330 21 6 1.7943 -2.7952 7.7357 22 8 0.9940 -3.0514 6.5706 23 6 0.8766 -3.5238 3.7611 24 6 0.5756 -3.0714 -1.0843 25 6 1.8414 -3.7300 -0.5322 26 1 -0.4850 0.8367 -0.0742 27 1 -0.3336 -3.2998 1.3636 28 1 0.2918 -1.7302 1.9238 29 1 3.2100 -2.6349 1.5071 30 1 2.6253 -1.6957 2.9020 31 1 3.8985 -4.4696 2.9968 32 1 4.6513 -2.9466 3.5292 33 1 2.0116 -6.0776 7.2156 34 1 3.2814 -4.9479 6.6416 35 1 3.0237 -4.1754 8.9145 36 1 1.2674 -4.5546 8.9329 37 1 2.7194 -2.2912 7.4559 38 1 1.2370 -2.1917 8.4521 39 1 -0.0687 -4.0609 3.6834 40 1 0.6993 -2.5338 4.1813 41 1 -0.3687 -3.5965 -0.9406 42 1 0.6647 -2.5101 -2.0145 43 1 2.7635 -3.6023 -1.0992 44 1 1.7300 -4.6885 -0.0254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602789781.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:24 Heat of formation + Delta-G solvation = -60.131310 kcal Electronic energy + Delta-G solvation = -23663.135078 eV Core-core repulsion = 20388.286290 eV Total energy + Delta-G solvation = -3274.848788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.93911 -38.41423 -36.71355 -34.06730 -32.15210 -31.97930 -31.73380 -28.58954 -27.33380 -25.61408 -23.78255 -23.50129 -21.78429 -21.00868 -20.91808 -19.71760 -18.71879 -17.00275 -16.41157 -16.13287 -15.39040 -15.27482 -14.74940 -14.51073 -14.29035 -14.16078 -13.70598 -13.48912 -13.21820 -12.97022 -12.83693 -12.42600 -11.79385 -11.56950 -11.40223 -11.27618 -11.09429 -11.04368 -10.89300 -10.81701 -10.77979 -10.51478 -10.41440 -10.12939 -10.06524 -9.46302 -9.31325 -9.04812 -8.81318 -8.45183 -8.09440 -7.41264 -6.02757 -4.07410 3.29564 3.35115 3.37353 3.85049 4.00639 4.39606 4.48165 4.53523 4.81867 4.89958 5.15749 5.20045 5.22413 5.43893 5.50910 5.52182 5.61352 5.62934 5.68910 5.74609 5.81553 5.83232 5.85711 5.99260 6.02895 6.16403 6.26454 6.40159 6.52042 6.58323 6.65735 6.80067 6.87275 6.94825 7.07017 7.10013 7.17011 7.48589 7.52835 7.58892 7.83536 7.97432 8.01239 8.46538 8.91843 9.55733 11.05104 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.005047 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.486362 B = 5547.036732 C = 6067.904478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.052 3.948 10 C 0.104 3.896 11 N -0.533 5.533 12 C 0.030 3.970 13 C 0.062 3.938 14 O -0.382 6.382 15 C 0.087 3.913 16 H 0.068 0.932 17 C 0.090 3.910 18 H 0.090 0.910 19 C -0.147 4.147 20 C -0.154 4.154 21 C 0.054 3.946 22 O -0.368 6.368 23 C 0.028 3.972 24 C -0.175 4.175 25 C -0.195 4.195 26 H 0.261 0.739 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -9.310 13.350 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.051 3.949 10 C -0.023 4.023 11 N -0.258 5.258 12 C -0.098 4.098 13 C -0.015 4.015 14 O -0.301 6.301 15 C 0.029 3.971 16 H 0.086 0.914 17 C 0.031 3.969 18 H 0.108 0.892 19 C -0.185 4.185 20 C -0.192 4.192 21 C -0.023 4.023 22 O -0.287 6.287 23 C -0.101 4.101 24 C -0.214 4.214 25 C -0.232 4.232 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.621 -9.421 13.303 16.698 hybrid contribution 0.199 1.570 -0.030 1.582 sum 3.820 -7.851 13.273 15.887 Atomic orbital electron populations 1.69967 1.05860 1.26808 1.48773 1.24963 0.94765 0.98776 0.94671 0.86766 0.79773 0.83469 0.78695 1.20248 1.21298 1.20150 1.20456 0.92824 0.89002 1.50878 0.92369 1.18774 0.97051 0.91025 0.88059 1.21636 0.92483 0.95685 0.92497 1.62373 1.04344 1.51790 1.07308 1.22706 0.90537 0.95230 1.01373 1.22776 0.95736 0.99606 0.83334 1.87884 1.33470 1.79251 1.29505 1.22465 0.84556 0.95701 0.94376 0.91448 1.22809 0.97397 0.84446 0.92224 0.89219 1.23145 1.01302 0.99497 0.94545 1.23274 1.02333 0.95893 0.97704 1.23311 0.95680 0.96330 0.86972 1.88476 1.64072 1.31581 1.44534 1.22567 0.97160 1.00187 0.90183 1.22729 0.93688 1.04213 1.00741 1.22757 0.96689 0.97660 1.06139 0.92947 0.93725 0.93387 0.87693 0.94347 0.93149 0.89315 0.90496 0.89245 0.90192 0.90780 0.92018 0.90312 0.91074 0.93506 0.92113 0.90601 0.91197 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 12.68 55.43 0.70 -24.14 16 2 C 0.07 1.94 5.20 -17.82 -0.09 1.85 16 3 Si 0.89 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.49 -13.08 7.13 -34.44 -0.25 -13.33 16 8 H 0.06 1.53 7.54 -52.49 -0.40 1.14 16 9 C 0.05 1.26 0.57 -155.66 -0.09 1.17 16 10 C 0.10 2.43 5.02 -3.82 -0.02 2.41 16 11 N -0.53 -10.78 4.60 -234.31 -1.08 -11.85 16 12 C 0.03 0.59 4.79 -3.71 -0.02 0.57 16 13 C 0.06 1.02 7.01 37.21 0.26 1.28 16 14 O -0.38 -6.32 9.32 -40.67 -0.38 -6.69 16 15 C 0.09 1.34 2.70 -26.68 -0.07 1.26 16 16 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 17 C 0.09 1.17 3.42 -26.00 -0.09 1.08 16 18 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 19 C -0.15 -1.53 6.44 -24.64 -0.16 -1.69 16 20 C -0.15 -1.44 7.18 -24.34 -0.17 -1.61 16 21 C 0.05 0.64 7.77 38.18 0.30 0.93 16 22 O -0.37 -5.59 10.12 -40.67 -0.41 -6.00 16 23 C 0.03 0.50 4.82 -3.71 -0.02 0.49 16 24 C -0.18 -4.13 9.88 -26.73 -0.26 -4.40 16 25 C -0.20 -4.26 9.27 -26.73 -0.25 -4.51 16 26 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 27 H 0.04 1.03 7.87 -51.93 -0.41 0.62 16 28 H 0.05 1.27 7.32 -51.93 -0.38 0.89 16 29 H 0.10 2.25 5.39 -51.93 -0.28 1.97 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.03 7.03 -51.93 -0.37 0.66 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.96 7.51 -51.93 -0.39 0.57 16 41 H 0.06 1.36 8.03 -51.93 -0.42 0.95 16 42 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -28.88 341.78 -9.66 -38.54 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.69 Total: 3.43 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.93 Total: -14.50 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.38 Total: -35.99 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.79 Total: -12.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.88 -9.66 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789781.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.595 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds