Wall clock time and date at job start Tue Mar 31 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00095 * 2 1 4 4 H 1.48501 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47011 * 299.99813 * 3 2 1 6 6 H 1.48495 * 109.47247 * 59.99890 * 3 2 1 7 7 C 1.37882 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00346 * 184.73001 * 7 2 1 9 9 C 1.50703 * 119.99357 * 4.45932 * 7 2 1 10 10 C 1.52999 * 115.55047 * 63.61072 * 9 7 2 11 11 N 1.46906 * 109.47014 * 60.31976 * 10 9 7 12 12 C 1.47016 * 110.99808 * 285.89096 * 11 10 9 13 13 C 1.53098 * 109.25902 * 177.60629 * 12 11 10 14 14 O 1.43020 * 109.25239 * 56.85040 * 13 12 11 15 15 C 1.43008 * 113.74130 * 301.32908 * 14 13 12 16 16 H 1.09006 * 109.50543 * 298.73563 * 15 14 13 17 17 C 1.53002 * 109.54489 * 178.63125 * 15 14 13 18 18 H 1.09004 * 109.86444 * 299.18912 * 17 15 14 19 19 C 1.54099 * 109.88039 * 60.19084 * 17 15 14 20 20 C 1.54811 * 104.18609 * 121.45481 * 19 17 15 21 21 C 1.54990 * 102.09142 * 20.88545 * 20 19 17 22 22 O 1.43741 * 109.88237 * 178.02747 * 17 15 14 23 23 C 1.47014 * 111.00110 * 162.26172 * 11 10 9 24 24 C 1.53003 * 117.50077 * 277.90218 * 9 7 2 25 25 C 1.53001 * 117.49740 * 209.27720 * 9 7 2 26 26 H 0.97000 * 119.99831 * 6.03828 * 1 2 3 27 27 H 1.09000 * 109.47197 * 180.31537 * 10 9 7 28 28 H 1.08996 * 109.47090 * 300.32027 * 10 9 7 29 29 H 1.08999 * 109.50979 * 297.54542 * 12 11 10 30 30 H 1.08997 * 109.50597 * 57.67339 * 12 11 10 31 31 H 1.08994 * 109.50626 * 296.91613 * 13 12 11 32 32 H 1.08998 * 109.50705 * 176.78022 * 13 12 11 33 33 H 1.08997 * 110.49506 * 240.13943 * 19 17 15 34 34 H 1.09003 * 110.49004 * 2.65004 * 19 17 15 35 35 H 1.09004 * 110.90102 * 139.08268 * 20 19 17 36 36 H 1.08997 * 110.90811 * 262.68301 * 20 19 17 37 37 H 1.09000 * 110.61940 * 81.47271 * 21 20 19 38 38 H 1.09000 * 110.61671 * 204.31637 * 21 20 19 39 39 H 1.09003 * 109.50411 * 302.32641 * 23 11 10 40 40 H 1.09000 * 109.50686 * 62.44995 * 23 11 10 41 41 H 1.09003 * 117.49250 * 359.97438 * 24 9 7 42 42 H 1.08993 * 117.49656 * 145.02179 * 24 9 7 43 43 H 1.08993 * 117.50218 * 214.97813 * 25 9 7 44 44 H 1.09001 * 117.49483 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1956 0.0777 9 6 1.2544 -2.4972 -0.1004 10 6 0.4787 -2.7131 -1.4013 11 7 1.4107 -2.6903 -2.5367 12 6 1.8602 -1.3200 -2.8219 13 6 2.8728 -1.3493 -3.9698 14 8 2.2748 -1.9714 -5.1104 15 6 1.8261 -3.3075 -4.8683 16 1 2.6751 -3.9318 -4.5896 17 6 1.1752 -3.8663 -6.1352 18 1 0.3152 -3.2556 -6.4100 19 6 2.1981 -3.8797 -7.2876 20 6 2.2697 -5.3662 -7.7141 21 6 0.9330 -5.9263 -7.1648 22 8 0.7626 -5.2254 -5.9141 23 6 0.8030 -3.2980 -3.7295 24 6 0.6509 -3.0664 1.1852 25 6 1.8817 -3.7264 0.5603 26 1 -0.4850 0.8354 -0.0884 27 1 -0.0280 -3.6775 -1.3665 28 1 -0.2587 -1.9193 -1.5206 29 1 1.0044 -0.7080 -3.1070 30 1 2.3297 -0.8985 -1.9331 31 1 3.7522 -1.9165 -3.6650 32 1 3.1658 -0.3303 -4.2228 33 1 1.8490 -3.2618 -8.1149 34 1 3.1709 -3.5336 -6.9384 35 1 2.3132 -5.4577 -8.7994 36 1 3.1205 -5.8638 -7.2487 37 1 0.1131 -5.7000 -7.8464 38 1 1.0067 -7.0010 -6.9984 39 1 0.5007 -4.3205 -3.5031 40 1 -0.0698 -2.7178 -4.0290 41 1 0.7968 -2.4984 2.1041 42 1 -0.2990 -3.5946 1.1043 43 1 1.7414 -4.6889 0.0685 44 1 2.8368 -3.5923 1.0683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602789782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:32 Heat of formation + Delta-G solvation = -55.904399 kcal Electronic energy + Delta-G solvation = -23612.518653 eV Core-core repulsion = 20337.853158 eV Total energy + Delta-G solvation = -3274.665495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -39.88458 -38.49863 -36.71991 -34.12033 -32.24143 -32.12368 -31.62877 -28.45470 -27.30364 -25.69044 -23.68564 -23.38926 -21.90438 -21.03276 -20.82126 -19.75803 -18.94722 -16.60571 -16.40425 -15.98714 -15.89429 -15.12980 -14.68147 -14.48584 -14.23180 -14.09812 -13.93089 -13.65758 -13.33110 -12.91895 -12.63329 -12.44146 -11.80168 -11.59880 -11.34901 -11.29503 -11.23244 -11.04126 -10.81738 -10.80471 -10.69108 -10.43834 -10.33999 -10.17854 -10.00684 -9.62804 -9.37942 -9.06710 -8.86643 -8.45757 -8.00735 -7.30479 -6.08270 -4.06237 3.22680 3.33219 3.35285 3.46575 4.33892 4.39217 4.53327 4.60185 4.80552 4.88268 5.08591 5.17166 5.18432 5.40449 5.52585 5.57491 5.57770 5.61076 5.68943 5.79766 5.87810 5.90043 5.97208 5.99477 6.09610 6.15354 6.28604 6.39389 6.43342 6.64005 6.68167 6.83255 6.84967 6.87621 7.04269 7.16481 7.23245 7.46837 7.49141 7.61254 7.83678 8.08449 8.16405 8.47465 8.87873 9.47776 10.98794 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.005069 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.414369 B = 5522.583447 C = 6280.419611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.477 4.477 8 H 0.062 0.938 9 C 0.058 3.942 10 C 0.101 3.899 11 N -0.520 5.520 12 C 0.003 3.997 13 C 0.064 3.936 14 O -0.390 6.390 15 C 0.102 3.898 16 H 0.068 0.932 17 C 0.086 3.914 18 H 0.073 0.927 19 C -0.143 4.143 20 C -0.157 4.157 21 C 0.046 3.954 22 O -0.366 6.366 23 C 0.027 3.973 24 C -0.181 4.181 25 C -0.199 4.199 26 H 0.260 0.740 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.142 0.858 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -7.391 -13.487 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.057 3.943 10 C -0.026 4.026 11 N -0.244 5.244 12 C -0.124 4.124 13 C -0.012 4.012 14 O -0.310 6.310 15 C 0.044 3.956 16 H 0.086 0.914 17 C 0.028 3.972 18 H 0.091 0.909 19 C -0.181 4.181 20 C -0.194 4.194 21 C -0.030 4.030 22 O -0.285 6.285 23 C -0.101 4.101 24 C -0.220 4.220 25 C -0.237 4.237 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.159 0.841 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.940 -7.522 -13.253 15.520 hybrid contribution -0.377 1.380 -0.163 1.440 sum 2.563 -6.143 -13.416 14.976 Atomic orbital electron populations 1.69986 1.05793 1.26764 1.48631 1.24973 0.94794 0.98587 0.95008 0.86800 0.80601 0.84469 0.77955 1.19345 1.20685 1.20893 1.20442 0.92732 0.88958 1.49352 0.91966 1.18740 0.96271 0.91198 0.88045 1.21538 0.93101 0.98194 0.89807 1.62089 1.39540 1.19273 1.03515 1.23453 0.98019 0.89935 1.01032 1.22834 0.95796 0.97021 0.85539 1.87778 1.79394 1.27245 1.36569 1.21954 0.96525 0.84416 0.92732 0.91422 1.22537 0.96539 0.84038 0.94076 0.90949 1.22892 1.00927 0.96295 0.97998 1.23167 0.98748 0.96112 1.01419 1.23542 0.96012 0.97483 0.86001 1.88884 1.86479 1.21194 1.31920 1.22661 0.95401 1.00366 0.91714 1.22728 0.94458 1.04555 1.00222 1.22797 0.96512 0.97472 1.06879 0.93026 0.94491 0.92655 0.95621 0.84074 0.92760 0.89285 0.90714 0.89785 0.90409 0.90484 0.92298 0.88979 0.90264 0.95375 0.90473 0.92106 0.91595 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.82 12.18 55.43 0.67 -23.15 16 2 C 0.07 1.80 4.54 -17.82 -0.08 1.72 16 3 Si 0.87 20.05 29.33 -169.99 -4.99 15.07 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.48 -12.32 5.82 -34.44 -0.20 -12.52 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.06 1.42 1.59 -155.66 -0.25 1.17 16 10 C 0.10 2.35 4.88 -3.82 -0.02 2.34 16 11 N -0.52 -11.11 4.67 -234.31 -1.09 -12.21 16 12 C 0.00 0.06 5.07 -3.71 -0.02 0.04 16 13 C 0.06 1.15 7.01 37.21 0.26 1.41 16 14 O -0.39 -6.83 9.96 -35.23 -0.35 -7.19 16 15 C 0.10 1.70 2.40 -26.68 -0.06 1.63 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 17 C 0.09 1.21 3.20 -26.16 -0.08 1.13 16 18 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.14 -1.62 6.39 -25.20 -0.16 -1.78 16 20 C -0.16 -1.44 7.15 -24.73 -0.18 -1.61 16 21 C 0.05 0.46 7.72 38.21 0.29 0.76 16 22 O -0.37 -5.18 10.69 -35.23 -0.38 -5.55 16 23 C 0.03 0.52 4.73 -3.71 -0.02 0.50 16 24 C -0.18 -4.24 9.94 -26.73 -0.27 -4.50 16 25 C -0.20 -4.43 9.95 -26.73 -0.27 -4.70 16 26 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 27 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 28 H 0.06 1.44 6.93 -51.93 -0.36 1.08 16 29 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.14 3.32 3.84 -51.93 -0.20 3.12 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.01 7.51 -51.93 -0.39 0.62 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -27.57 340.69 -9.69 -37.26 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.65 Total: 5.04 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.04 Total: -14.41 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.42 Total: -35.36 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.73 Total: -12.74 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.99 Total: 15.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.57 -9.69 -37.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.642 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds