Wall clock time and date at job start Tue Mar 31 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99835 * 2 1 4 4 H 1.48498 * 109.46809 * 274.98487 * 3 2 1 5 5 H 1.48498 * 109.47080 * 34.98484 * 3 2 1 6 6 H 1.48500 * 109.47041 * 154.98193 * 3 2 1 7 7 C 1.37874 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00338 * 161.14177 * 7 2 1 9 9 C 1.50699 * 119.99772 * 341.14507 * 7 2 1 10 10 C 1.53001 * 115.55317 * 323.61669 * 9 7 2 11 11 N 1.46900 * 109.46865 * 279.65583 * 10 9 7 12 12 C 1.47014 * 111.00146 * 64.39482 * 11 10 9 13 13 C 1.53097 * 109.25922 * 177.60595 * 12 11 10 14 14 O 1.43017 * 109.25698 * 56.84601 * 13 12 11 15 15 C 1.43015 * 113.73977 * 301.33035 * 14 13 12 16 16 H 1.09007 * 109.50528 * 298.69566 * 15 14 13 17 17 C 1.52995 * 109.51017 * 178.60783 * 15 14 13 18 18 H 1.08999 * 109.82664 * 177.63710 * 17 15 14 19 19 C 1.54384 * 109.90599 * 56.70072 * 17 15 14 20 20 C 1.55307 * 102.25481 * 219.08999 * 19 17 15 21 21 C 1.54947 * 100.94056 * 34.13517 * 20 19 17 22 22 O 1.43244 * 109.82638 * 298.52787 * 17 15 14 23 23 C 1.47005 * 111.00007 * 300.75425 * 11 10 9 24 24 C 1.53008 * 117.51731 * 109.31845 * 9 7 2 25 25 C 1.53002 * 60.00016 * 107.48304 * 24 9 7 26 26 H 0.97004 * 120.00197 * 5.04070 * 1 2 3 27 27 H 1.08994 * 109.47385 * 159.65367 * 10 9 7 28 28 H 1.09001 * 109.46903 * 39.65250 * 10 9 7 29 29 H 1.08997 * 109.51019 * 57.66688 * 12 11 10 30 30 H 1.09000 * 109.54015 * 297.56238 * 12 11 10 31 31 H 1.08997 * 109.50290 * 296.91157 * 13 12 11 32 32 H 1.08996 * 109.53873 * 176.80035 * 13 12 11 33 33 H 1.09001 * 110.84641 * 337.28587 * 19 17 15 34 34 H 1.08993 * 110.84707 * 100.89751 * 19 17 15 35 35 H 1.08998 * 111.12337 * 276.21575 * 20 19 17 36 36 H 1.09000 * 111.16069 * 152.07059 * 20 19 17 37 37 H 1.09002 * 110.31025 * 204.64195 * 21 20 19 38 38 H 1.09003 * 110.31234 * 82.46975 * 21 20 19 39 39 H 1.08997 * 109.50617 * 62.46268 * 23 11 10 40 40 H 1.08999 * 109.51015 * 302.32817 * 23 11 10 41 41 H 1.08996 * 117.49762 * 214.96672 * 24 9 7 42 42 H 1.09001 * 117.49879 * 359.97438 * 24 9 7 43 43 H 1.09006 * 117.49524 * 252.51144 * 25 24 9 44 44 H 1.08997 * 117.50102 * 107.48828 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5032 2.6200 0.8027 6 1 3.5954 1.4122 0.5921 7 6 2.0046 -1.1940 0.0005 8 1 3.0411 -1.2192 -0.3018 9 6 1.3118 -2.4639 0.4229 10 6 0.3009 -2.3167 1.5620 11 7 1.0127 -2.2798 2.8465 12 6 1.8710 -1.0898 2.9392 13 6 2.5460 -1.0598 4.3130 14 8 3.2792 -2.2726 4.5049 15 6 2.4739 -3.4515 4.4217 16 1 1.7130 -3.4284 5.2020 17 6 3.3568 -4.6874 4.6057 18 1 2.7421 -5.5873 4.5851 19 6 4.1112 -4.5991 5.9498 20 6 5.5096 -5.1651 5.5809 21 6 5.6563 -4.6594 4.1236 22 8 4.3368 -4.7441 3.5624 23 6 1.7982 -3.5057 3.0490 24 6 1.0067 -3.4976 -0.6632 25 6 2.1164 -3.7635 0.3560 26 1 -0.4851 0.8368 -0.0738 27 1 -0.3849 -3.1638 1.5508 28 1 -0.2615 -1.3922 1.4314 29 1 1.2648 -0.1929 2.8118 30 1 2.6325 -1.1280 2.1602 31 1 1.7867 -0.9667 5.0895 32 1 3.2270 -0.2104 4.3661 33 1 4.1873 -3.5646 6.2847 34 1 3.6293 -5.2183 6.7064 35 1 5.5156 -6.2543 5.6212 36 1 6.2852 -4.7464 6.2221 37 1 6.3448 -5.2973 3.5693 38 1 6.0056 -3.6269 4.1148 39 1 2.5585 -3.5833 2.2719 40 1 1.1389 -4.3724 3.0019 41 1 0.0860 -4.0727 -0.5661 42 1 1.3068 -3.2590 -1.6836 43 1 3.1468 -3.7000 0.0061 44 1 1.9257 -4.5136 1.1235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602789784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:51 Heat of formation + Delta-G solvation = -61.254526 kcal Electronic energy + Delta-G solvation = -24414.312241 eV Core-core repulsion = 21139.414747 eV Total energy + Delta-G solvation = -3274.897494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.23175 -39.87123 -38.37336 -35.25569 -34.39511 -33.13939 -32.75592 -29.82497 -28.87141 -27.61567 -25.21236 -24.86162 -23.14837 -22.65678 -22.01434 -20.97507 -20.70576 -18.24176 -17.99516 -17.23287 -16.93127 -16.63054 -16.33112 -15.92331 -15.87285 -15.69100 -15.26277 -14.71428 -14.55987 -14.10072 -13.90019 -13.84637 -13.35873 -13.16329 -12.94596 -12.65966 -12.55726 -12.43716 -12.38126 -12.25161 -12.03794 -11.86643 -11.71252 -11.64624 -11.55842 -11.27247 -10.91701 -10.63141 -10.45395 -10.34089 -9.93161 -8.89420 -8.13930 -6.12340 1.33096 1.39358 1.48688 2.37425 2.82356 2.91169 2.98722 3.24327 3.63487 3.72323 3.85662 4.04455 4.15516 4.25820 4.26719 4.35481 4.39897 4.44081 4.50901 4.55269 4.60072 4.68063 4.71908 4.74161 4.85902 4.89145 4.90142 4.97529 5.00569 5.05890 5.07281 5.14642 5.30792 5.37972 5.40726 5.49861 5.54153 5.57884 5.96505 6.17969 6.29315 6.30308 6.36692 6.53658 6.79477 7.40627 8.87477 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.006180 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.177344 B = 4529.807607 C = 4911.701590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.048 3.952 3 Si 0.925 3.075 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.502 4.502 8 H 0.038 0.962 9 C 0.006 3.994 10 C 0.086 3.914 11 N -0.525 5.525 12 C 0.027 3.973 13 C 0.068 3.932 14 O -0.385 6.385 15 C 0.085 3.915 16 H 0.076 0.924 17 C 0.086 3.914 18 H 0.105 0.895 19 C -0.142 4.142 20 C -0.143 4.143 21 C 0.044 3.956 22 O -0.396 6.396 23 C 0.009 3.991 24 C -0.207 4.207 25 C -0.188 4.188 26 H 0.265 0.735 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -7.965 13.669 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.154 4.154 3 Si 0.751 3.249 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.004 3.996 10 C -0.042 4.042 11 N -0.248 5.248 12 C -0.101 4.101 13 C -0.009 4.009 14 O -0.304 6.304 15 C 0.027 3.973 16 H 0.093 0.907 17 C 0.028 3.972 18 H 0.122 0.878 19 C -0.179 4.179 20 C -0.180 4.180 21 C -0.033 4.033 22 O -0.315 6.315 23 C -0.119 4.119 24 C -0.246 4.246 25 C -0.225 4.225 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.339 -7.808 13.947 17.195 hybrid contribution 0.553 1.066 -1.396 1.841 sum 6.892 -6.742 12.551 15.826 Atomic orbital electron populations 1.69917 1.06905 1.27506 1.48341 1.25350 0.95120 1.00912 0.94023 0.86049 0.79687 0.80942 0.78251 1.20658 1.19749 1.19464 1.20495 0.96161 0.91829 1.45383 0.94402 1.19729 0.96826 0.87998 0.95043 1.21805 0.94639 1.02586 0.85148 1.62720 1.27743 1.02107 1.32256 1.22652 0.96368 0.93431 0.97662 1.22731 0.95790 0.87207 0.95204 1.87889 1.35970 1.14065 1.92435 1.22671 0.92597 0.86039 0.96013 0.90672 1.22956 0.90753 0.95348 0.88176 0.87781 1.23091 0.95648 1.03021 0.96154 1.23212 0.97378 1.02045 0.95355 1.23477 0.84709 1.00266 0.94813 1.88469 1.15811 1.94567 1.32683 1.23167 0.97193 0.93133 0.98409 1.22962 0.98618 1.07691 0.95339 1.23033 0.94885 1.02416 1.02207 0.92505 0.94075 0.88191 0.92606 0.93570 0.91993 0.88003 0.90517 0.87880 0.89153 0.88550 0.89171 0.93655 0.91961 0.91003 0.90571 0.92014 0.92046 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.71 10.99 21.45 0.24 -48.48 16 2 C 0.05 2.54 4.28 84.65 0.36 2.90 16 3 Si 0.93 42.35 29.58 68.60 2.03 44.38 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.50 -27.52 6.52 25.60 0.17 -27.36 16 8 H 0.04 2.17 7.89 -2.91 -0.02 2.15 16 9 C 0.01 0.29 1.41 -52.92 -0.07 0.22 16 10 C 0.09 4.11 5.29 86.30 0.46 4.56 16 11 N -0.53 -22.23 4.94 -895.25 -4.42 -26.65 16 12 C 0.03 1.18 4.45 86.31 0.38 1.56 16 13 C 0.07 2.32 7.01 72.01 0.50 2.82 16 14 O -0.38 -13.23 9.40 -141.90 -1.33 -14.56 16 15 C 0.08 2.66 2.67 30.63 0.08 2.74 16 16 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 17 C 0.09 2.22 3.39 31.06 0.11 2.33 16 18 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 19 C -0.14 -2.74 6.44 31.86 0.21 -2.54 16 20 C -0.14 -2.43 7.16 32.05 0.23 -2.20 16 21 C 0.04 1.06 7.78 72.65 0.56 1.62 16 22 O -0.40 -12.42 10.17 -141.90 -1.44 -13.86 16 23 C 0.01 0.34 3.25 86.32 0.28 0.62 16 24 C -0.21 -9.84 9.88 30.60 0.30 -9.54 16 25 C -0.19 -8.56 7.58 30.60 0.23 -8.33 16 26 H 0.27 13.82 8.32 -92.71 -0.77 13.05 16 27 H 0.04 1.88 7.94 -2.39 -0.02 1.86 16 28 H 0.10 5.34 5.32 -2.39 -0.01 5.33 16 29 H 0.06 2.55 7.91 -2.39 -0.02 2.53 16 30 H 0.05 2.30 5.67 -2.39 -0.01 2.28 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.08 1.68 7.12 -2.39 -0.02 1.66 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 2.69 4.00 -2.39 -0.01 2.68 16 40 H 0.07 2.55 7.82 -2.39 -0.02 2.53 16 41 H 0.08 3.35 8.08 -2.39 -0.02 3.33 16 42 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 44 H 0.10 4.00 5.63 -2.39 -0.01 3.98 16 Total: -1.00 -60.77 328.75 -0.16 -60.93 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.97 Total: 28.83 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.80 Total: -30.60 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -4.18 Total: -75.13 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -2.78 Total: -28.42 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -60.77 -0.16 -60.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -60.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds