Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00122 * 2 1 4 4 H 1.48502 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47226 * 300.00296 * 3 2 1 6 6 H 1.48497 * 109.47290 * 60.00276 * 3 2 1 7 7 C 1.37877 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47412 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47662 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99510 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00169 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00077 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47500 * 180.02562 * 16 15 13 18 18 O 1.20763 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.54894 * 110.48422 * 93.23949 * 19 17 16 21 21 C 1.55238 * 102.58338 * 156.67616 * 20 19 17 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 0.97003 * 119.99988 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47098 * 59.99733 * 9 7 2 26 26 H 1.08997 * 109.47207 * 300.00582 * 9 7 2 27 27 H 1.08992 * 109.47203 * 59.99974 * 10 9 7 28 28 H 1.09002 * 109.46808 * 299.99903 * 10 9 7 29 29 H 1.09003 * 109.47364 * 60.00121 * 11 10 9 30 30 H 1.08997 * 109.47194 * 300.00168 * 11 10 9 31 31 H 1.09003 * 109.47189 * 59.99715 * 12 11 10 32 32 H 1.08997 * 109.47362 * 300.00413 * 12 11 10 33 33 H 0.97006 * 120.00160 * 0.02562 * 15 13 12 34 34 H 1.09003 * 109.47027 * 59.99659 * 16 15 13 35 35 H 1.09002 * 109.47046 * 300.00093 * 16 15 13 36 36 H 1.09002 * 110.43350 * 330.69728 * 19 17 16 37 37 H 1.08996 * 110.75388 * 275.05970 * 20 19 17 38 38 H 1.08993 * 110.76071 * 38.44196 * 20 19 17 39 39 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 40 40 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 41 41 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 42 42 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 43 43 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 44 44 H 1.08995 * 110.03881 * 119.28625 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0018 13 6 1.7208 -7.4552 -0.0031 14 8 0.5079 -7.4551 -0.0039 15 7 2.3946 -8.6223 -0.0033 16 6 1.6621 -9.8911 -0.0040 17 6 2.6413 -11.0366 -0.0035 18 8 3.8286 -10.8159 -0.0031 19 6 2.1390 -12.4573 -0.0046 20 6 2.0370 -12.9951 -1.4536 21 6 2.1185 -14.5320 -1.2505 22 6 3.1465 -14.7104 -0.1142 23 6 3.1595 -13.3914 0.6780 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.8538 -5.0446 -0.8914 30 1 0.8532 -5.0450 0.8885 31 1 3.1010 -6.0928 0.8882 32 1 3.1009 -6.0919 -0.8917 33 1 3.3647 -8.6224 -0.0023 34 1 1.0357 -9.9485 -0.8942 35 1 1.0352 -9.9491 0.8858 36 1 1.1718 -12.5194 0.4943 37 1 1.0858 -12.7124 -1.9045 38 1 2.8725 -12.6403 -2.0570 39 1 2.4679 -15.0188 -2.1610 40 1 1.1486 -14.9313 -0.9537 41 1 4.1344 -14.9051 -0.5317 42 1 2.8471 -15.5331 0.5353 43 1 4.1537 -12.9458 0.6450 44 1 2.8657 -13.5736 1.7116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628989930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -117.285602 kcal Electronic energy + Delta-G solvation = -20887.734109 eV Core-core repulsion = 17610.406925 eV Total energy + Delta-G solvation = -3277.327184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74629 -39.42916 -37.60029 -35.02200 -34.49552 -32.60980 -30.84199 -29.79113 -29.22273 -27.78053 -25.37237 -22.71864 -21.83347 -20.97905 -20.46222 -19.95704 -19.51882 -17.56014 -16.67558 -16.35383 -16.15983 -16.09273 -15.66893 -15.26056 -14.77535 -14.41314 -14.13786 -13.93061 -13.84533 -13.34959 -12.94183 -12.70508 -12.57936 -12.07192 -11.74520 -11.69273 -11.67181 -11.62290 -11.57413 -11.29847 -10.97695 -10.91649 -10.51627 -10.46943 -10.38845 -10.14535 -9.84437 -9.59108 -9.29947 -9.20256 -8.95027 -8.28825 -5.93524 -3.95776 1.38592 2.68707 2.88810 3.34573 3.41690 3.45902 3.52678 3.97290 4.04071 4.35413 4.50717 4.74751 4.83280 4.87000 4.91586 4.94766 5.00454 5.04821 5.14776 5.16239 5.30734 5.36243 5.40106 5.42297 5.42899 5.57603 5.62816 5.74870 5.83382 5.88206 6.16657 6.18052 6.33070 6.57368 6.86718 6.93903 7.04481 7.22580 7.38621 7.76665 7.92484 8.08191 8.20950 8.50239 9.12202 9.67805 11.17835 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.062791 B = 0.002001 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.817834 B =13988.613422 C =14216.635746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.536 6.536 15 N -0.735 5.735 16 C 0.068 3.932 17 C 0.360 3.640 18 O -0.446 6.446 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.408 0.592 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 -31.565 -0.726 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.411 6.411 15 N -0.392 5.392 16 C -0.057 4.057 17 C 0.235 3.765 18 O -0.318 6.318 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.245 0.755 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.204 -31.326 -0.722 31.763 hybrid contribution 0.746 0.891 0.052 1.163 sum 5.950 -30.435 -0.670 31.018 Atomic orbital electron populations 1.69988 1.06037 1.26365 1.51090 1.25048 0.94851 0.99247 0.95502 0.86551 0.80086 0.83917 0.77521 1.19787 1.21069 1.21066 1.21330 0.93041 0.91199 1.50180 0.92688 1.19105 0.94077 0.91291 0.97326 1.21653 0.99089 0.93975 1.00129 1.21455 0.96997 0.92681 1.02966 1.21795 1.00121 0.91667 1.04204 1.21147 0.88412 0.85429 0.74770 1.90708 1.14170 1.87673 1.48579 1.45944 1.11121 1.04679 1.77414 1.21675 0.95460 0.83538 1.05018 1.24713 0.89649 0.92142 0.70001 1.90380 1.19002 1.87004 1.35448 1.22551 1.01611 0.92625 0.99262 1.22529 1.02770 0.95833 0.93683 1.22420 0.99614 0.95253 0.98768 1.22127 0.99682 0.97234 0.97139 1.22168 0.99748 0.94694 0.99053 0.93125 0.96565 0.96576 0.93440 0.93448 0.91778 0.91775 0.88995 0.88999 0.75499 0.87945 0.87970 0.87777 0.90369 0.90848 0.91216 0.91154 0.91590 0.91567 0.90128 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 11 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.26 7.83 -10.98 -0.09 7.17 16 14 O -0.54 -9.55 15.98 5.56 0.09 -9.46 16 15 N -0.74 -7.96 5.53 -61.47 -0.34 -8.30 16 16 C 0.07 0.59 6.09 -5.19 -0.03 0.55 16 17 C 0.36 2.80 6.35 -29.04 -0.18 2.61 16 18 O -0.45 -4.64 14.99 6.00 0.09 -4.55 16 19 C -0.14 -0.79 3.18 -90.11 -0.29 -1.07 16 20 C -0.11 -0.56 6.34 -24.55 -0.16 -0.72 16 21 C -0.12 -0.54 6.84 -24.88 -0.17 -0.71 16 22 C -0.12 -0.61 6.80 -25.62 -0.17 -0.78 16 23 C -0.12 -0.70 6.33 -25.62 -0.16 -0.87 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.41 3.95 7.44 -40.82 -0.30 3.65 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.61 6.84 -51.93 -0.36 0.26 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -34.47 362.01 -9.01 -43.48 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.80 Total: -2.86 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.22 Total: -13.88 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.40 Total: -35.27 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.18 Total: -14.01 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.47 -9.01 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628989930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.803 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds