Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00133 * 2 1 4 4 H 1.48490 * 109.47272 * 274.99295 * 3 2 1 5 5 H 1.48505 * 109.46733 * 34.99273 * 3 2 1 6 6 H 1.48501 * 109.46891 * 154.99119 * 3 2 1 7 7 C 1.37874 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99782 * 189.54024 * 7 2 1 9 9 C 1.50699 * 120.00120 * 9.53092 * 7 2 1 10 10 H 1.08997 * 109.52640 * 305.50346 * 9 7 2 11 11 C 1.53038 * 109.49827 * 185.42475 * 9 7 2 12 12 C 1.53043 * 109.53961 * 178.68547 * 11 9 7 13 13 C 1.53193 * 109.31160 * 61.36434 * 12 11 9 14 14 N 1.46918 * 108.77479 * 305.36598 * 13 12 11 15 15 C 1.34778 * 120.63302 * 233.62638 * 14 13 12 16 16 O 1.21507 * 120.00397 * 179.97438 * 15 14 13 17 17 O 1.34642 * 119.99540 * 0.02562 * 15 14 13 18 18 C 1.45202 * 116.99787 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47174 * 269.99638 * 18 17 15 20 20 C 1.53001 * 109.46984 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47028 * 60.00328 * 20 19 18 22 22 C 1.52999 * 109.46970 * 299.99680 * 21 20 19 23 23 C 1.52996 * 109.47090 * 149.99244 * 18 17 15 24 24 C 1.46932 * 118.74225 * 53.61232 * 14 13 12 25 25 H 0.97000 * 119.99837 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46114 * 58.66148 * 11 9 7 27 27 H 1.09001 * 109.46085 * 298.70770 * 11 9 7 28 28 H 1.08997 * 109.49585 * 181.31427 * 12 11 9 29 29 H 1.08997 * 109.49763 * 301.38306 * 12 11 9 30 30 H 1.09006 * 109.58672 * 65.15467 * 13 12 11 31 31 H 1.08994 * 109.58509 * 185.57773 * 13 12 11 32 32 H 1.09003 * 109.47079 * 30.00022 * 18 17 15 33 33 H 1.08997 * 109.47103 * 299.99887 * 19 18 17 34 34 H 1.09000 * 109.46792 * 60.00361 * 19 18 17 35 35 H 1.08997 * 109.47300 * 300.00001 * 20 19 18 36 36 H 1.08998 * 109.46975 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47566 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.47408 * 59.99239 * 21 20 19 39 39 H 1.09003 * 109.47431 * 299.99890 * 22 21 20 40 40 H 1.09005 * 109.47137 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47849 * 300.00199 * 23 18 17 42 42 H 1.09003 * 109.46523 * 60.00438 * 23 18 17 43 43 H 1.08998 * 109.58513 * 66.17257 * 24 14 13 44 44 H 1.08994 * 109.58779 * 186.60172 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0734 -1.2006 0.1545 9 6 1.2666 -2.4900 -0.2172 10 1 0.4552 -2.5725 0.5059 11 6 2.2320 -3.6638 -0.0376 12 6 1.4765 -4.9814 -0.2251 13 6 0.9037 -5.0393 -1.6448 14 7 0.0893 -3.8385 -1.8755 15 6 -1.1863 -3.9446 -2.2977 16 8 -1.8497 -2.9439 -2.4844 17 8 -1.7257 -5.1595 -2.5117 18 6 -3.1045 -5.1980 -2.9652 19 6 -4.0383 -5.2533 -1.7545 20 6 -5.4912 -5.2931 -2.2325 21 6 -5.7084 -6.5338 -3.1011 22 6 -4.7746 -6.4785 -4.3119 23 6 -3.3213 -6.4388 -3.8337 24 6 0.6915 -2.5197 -1.6368 25 1 -0.4850 0.8401 0.0004 26 1 2.6615 -3.6308 0.9637 27 1 3.0298 -3.5942 -0.7771 28 1 2.1596 -5.8172 -0.0740 29 1 0.6634 -5.0407 0.4983 30 1 1.7196 -5.0718 -2.3669 31 1 0.2825 -5.9284 -1.7521 32 1 -3.3198 -4.3034 -3.5497 33 1 -3.8230 -6.1478 -1.1702 34 1 -3.8838 -4.3692 -1.1359 35 1 -5.7062 -4.3984 -2.8166 36 1 -6.1564 -5.3330 -1.3700 37 1 -6.7436 -6.5625 -3.4413 38 1 -5.4933 -7.4286 -2.5170 39 1 -4.9897 -5.5837 -4.8961 40 1 -4.9297 -7.3621 -4.9310 41 1 -2.6561 -6.3995 -4.6962 42 1 -3.1060 -7.3333 -3.2492 43 1 1.4900 -2.3468 -2.3582 44 1 -0.0698 -1.7465 -1.7389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704271330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -114.107255 kcal Electronic energy + Delta-G solvation = -23185.110464 eV Core-core repulsion = 19907.921103 eV Total energy + Delta-G solvation = -3277.189361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18548 -38.43823 -37.01176 -35.33709 -33.32662 -31.80307 -30.88723 -30.02552 -29.70069 -25.11060 -24.80269 -22.75718 -22.44976 -21.82958 -20.37632 -19.93815 -18.85007 -17.40759 -16.63287 -16.19868 -15.62238 -15.21431 -14.56648 -14.34680 -14.19090 -14.03665 -13.64451 -13.49502 -13.04224 -12.79276 -12.63905 -12.58955 -12.32151 -12.14140 -11.90653 -11.28655 -11.17622 -11.01100 -10.95964 -10.84393 -10.71644 -10.53533 -10.41320 -10.37211 -10.23855 -9.92894 -9.85934 -9.71329 -9.11696 -9.02096 -8.40274 -7.84087 -6.03109 -4.07938 2.73130 3.31627 3.39286 3.41243 3.51645 4.34614 4.44486 4.60840 4.63070 4.84887 5.10741 5.11876 5.28768 5.30110 5.35678 5.37819 5.47677 5.51677 5.56484 5.65943 5.72848 5.86312 5.90870 5.96140 6.01692 6.07457 6.10616 6.23815 6.25653 6.30700 6.34553 6.55179 6.64754 6.79414 6.87315 6.95812 7.13664 7.19610 7.60648 7.84000 7.96766 8.17651 8.37370 8.95555 9.02133 9.56578 11.04794 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.004293 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.416134 B = 6521.067763 C = 7231.039697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.038 3.962 10 H 0.037 0.963 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.587 5.587 15 C 0.640 3.360 16 O -0.570 6.570 17 O -0.373 6.373 18 C 0.109 3.891 19 C -0.136 4.136 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.115 4.115 24 C 0.131 3.869 25 H 0.263 0.737 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 -14.705 -6.247 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.018 3.982 10 H 0.055 0.945 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.008 4.008 14 N -0.327 5.327 15 C 0.393 3.607 16 O -0.459 6.459 17 O -0.288 6.288 18 C 0.053 3.947 19 C -0.174 4.174 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.152 4.152 24 C 0.012 3.988 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.327 -14.290 -6.326 17.260 hybrid contribution 0.447 1.015 0.033 1.110 sum -6.881 -13.275 -6.293 16.222 Atomic orbital electron populations 1.69988 1.05889 1.26919 1.48590 1.25053 0.94780 0.99295 0.94694 0.86630 0.79985 0.83664 0.78076 1.20595 1.21260 1.19829 1.21044 0.94178 0.90447 1.50473 0.92220 1.19011 0.94513 0.92513 0.92138 0.94473 1.21628 0.98517 0.94082 1.00579 1.21963 1.00025 0.99068 0.96195 1.21590 0.94760 0.87385 0.97065 1.47496 1.08421 1.09751 1.67010 1.18190 0.83120 0.81647 0.77723 1.90968 1.61052 1.36449 1.57447 1.86247 1.29897 1.31627 1.81067 1.22530 0.77320 0.99545 0.95347 1.21944 0.94418 1.03235 0.97826 1.21484 0.95750 0.98362 0.99726 1.21596 0.99192 0.98490 0.96698 1.21509 0.93696 1.02326 0.97758 1.21611 0.96968 0.97379 0.99282 1.22310 0.97474 0.80069 0.98922 0.92693 0.92840 0.93183 0.92116 0.92123 0.92095 0.90373 0.89787 0.91293 0.90860 0.91586 0.91485 0.91843 0.91801 0.91612 0.91300 0.91200 0.90946 0.93319 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 12.22 55.43 0.68 -25.11 16 2 C 0.07 1.81 5.24 -17.82 -0.09 1.72 16 3 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.16 8.48 -34.44 -0.29 -14.45 16 8 H 0.06 1.58 7.77 -52.48 -0.41 1.17 16 9 C 0.04 0.93 2.11 -91.65 -0.19 0.74 16 10 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 11 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 12 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 13 C 0.12 1.94 6.45 -3.71 -0.02 1.91 16 14 N -0.59 -12.38 2.97 -178.56 -0.53 -12.91 16 15 C 0.64 13.80 8.40 54.06 0.45 14.26 16 16 O -0.57 -14.25 15.01 -19.28 -0.29 -14.53 16 17 O -0.37 -6.62 8.52 -40.33 -0.34 -6.97 16 18 C 0.11 1.60 2.46 -26.73 -0.07 1.54 16 19 C -0.14 -1.86 5.56 -26.73 -0.15 -2.01 16 20 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 21 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 22 C -0.12 -1.03 5.92 -26.71 -0.16 -1.19 16 23 C -0.11 -1.26 5.59 -26.71 -0.15 -1.41 16 24 C 0.13 3.19 5.48 -3.71 -0.02 3.17 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.18 6.93 -51.93 -0.36 0.82 16 32 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.11 3.00 5.94 -51.93 -0.31 2.70 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -30.79 342.78 -9.42 -40.21 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.77 Total: 1.05 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.31 Total: -3.11 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.15 Total: -38.02 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.63 Total: -21.50 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.79 -9.42 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704271330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.899 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds