Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47061 * 234.99524 * 3 2 1 5 5 H 1.48510 * 109.47183 * 354.99252 * 3 2 1 6 6 H 1.48494 * 109.47596 * 114.99303 * 3 2 1 7 7 C 1.37879 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00137 * 191.94469 * 7 2 1 9 9 C 1.50697 * 119.99832 * 11.94427 * 7 2 1 10 10 C 1.52997 * 115.56587 * 39.81370 * 9 7 2 11 11 N 1.46905 * 109.47160 * 77.35115 * 10 9 7 12 12 C 1.46846 * 110.99661 * 46.13631 * 11 10 9 13 13 C 1.53033 * 109.52357 * 185.84351 * 12 11 10 14 14 C 1.53119 * 109.27590 * 300.81928 * 13 12 11 15 15 C 1.53115 * 109.16161 * 57.65369 * 14 13 12 16 16 H 1.09001 * 109.50424 * 62.28827 * 15 14 13 17 17 C 1.52998 * 109.50511 * 182.40366 * 15 14 13 18 18 O 1.43748 * 109.63364 * 59.17098 * 17 15 14 19 19 C 1.44783 * 104.81861 * 215.80915 * 18 17 15 20 20 C 1.54913 * 101.71904 * 36.09768 * 19 18 17 21 21 O 1.43365 * 109.63330 * 299.80210 * 17 15 14 22 22 C 1.46847 * 111.00223 * 170.34750 * 11 10 9 23 23 C 1.53005 * 117.49804 * 254.12806 * 9 7 2 24 24 C 1.52997 * 117.50036 * 185.50778 * 9 7 2 25 25 H 0.97001 * 119.99934 * 5.00581 * 1 2 3 26 26 H 1.08999 * 109.47759 * 197.35482 * 10 9 7 27 27 H 1.09003 * 109.46921 * 317.35691 * 10 9 7 28 28 H 1.09007 * 109.46350 * 305.85662 * 12 11 10 29 29 H 1.09003 * 109.46680 * 65.82268 * 12 11 10 30 30 H 1.09002 * 109.50601 * 180.88016 * 13 12 11 31 31 H 1.08993 * 109.54139 * 60.77716 * 13 12 11 32 32 H 1.09007 * 109.52457 * 297.74925 * 14 13 12 33 33 H 1.09003 * 109.57810 * 177.58965 * 14 13 12 34 34 H 1.09005 * 109.62780 * 179.41194 * 17 15 14 35 35 H 1.09003 * 110.97649 * 277.99202 * 19 18 17 36 36 H 1.08996 * 110.97837 * 154.20508 * 19 18 17 37 37 H 1.09003 * 110.69434 * 206.04066 * 20 19 18 38 38 H 1.09008 * 110.69419 * 82.83949 * 20 19 18 39 39 H 1.09004 * 109.45942 * 294.17490 * 22 11 10 40 40 H 1.08997 * 109.46160 * 54.14106 * 22 11 10 41 41 H 1.09001 * 117.49738 * 0.02562 * 23 9 7 42 42 H 1.09000 * 117.49863 * 145.01801 * 23 9 7 43 43 H 1.09000 * 117.50030 * 214.97551 * 24 9 7 44 44 H 1.09000 * 117.49868 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1922 1.6447 -1.1468 5 1 1.2888 2.7438 -0.1222 6 1 3.0090 1.7506 1.2689 7 6 2.0045 -1.1941 0.0005 8 1 3.0670 -1.2041 0.1941 9 6 1.2755 -2.4851 -0.2690 10 6 0.2063 -2.4239 -1.3616 11 7 0.8526 -2.4408 -2.6808 12 6 1.8898 -3.4784 -2.7452 13 6 2.6380 -3.3717 -4.0759 14 6 1.6454 -3.5435 -5.2291 15 6 0.5490 -2.4812 -5.1111 16 1 0.9923 -1.4893 -5.1997 17 6 -0.4800 -2.6831 -6.2252 18 8 -1.0536 -3.9970 -6.1205 19 6 -1.2633 -4.4196 -7.4893 20 6 -0.0314 -3.8058 -8.2003 21 8 0.1613 -2.5594 -7.5014 22 6 -0.1386 -2.6136 -3.7504 23 6 1.0177 -3.4124 0.9204 24 6 2.0675 -3.7865 -0.1278 25 1 -0.4850 0.8369 -0.0733 26 1 -0.4562 -3.2847 -1.2706 27 1 -0.3726 -1.5068 -1.2525 28 1 2.5914 -3.3422 -1.9222 29 1 1.4254 -4.4615 -2.6674 30 1 3.3973 -4.1518 -4.1301 31 1 3.1146 -2.3942 -4.1488 32 1 1.1976 -4.5361 -5.1795 33 1 2.1658 -3.4258 -6.1796 34 1 -1.2671 -1.9342 -6.1367 35 1 -2.1899 -4.0063 -7.8877 36 1 -1.2574 -5.5067 -7.5673 37 1 -0.2442 -3.6275 -9.2544 38 1 0.8402 -4.4504 -8.0859 39 1 -0.5935 -3.6008 -3.6679 40 1 -0.9102 -1.8495 -3.6573 41 1 1.3750 -3.0885 1.8979 42 1 0.0864 -3.9788 0.9244 43 1 1.8269 -4.5990 -0.8134 44 1 3.1161 -3.7088 0.1596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719110680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = -49.840347 kcal Electronic energy + Delta-G solvation = -23732.482443 eV Core-core repulsion = 20458.079905 eV Total energy + Delta-G solvation = -3274.402538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = -0.90 seconds Orbital eigenvalues (eV) -40.59976 -38.56533 -36.16724 -35.03797 -32.45494 -32.12250 -31.35218 -29.13080 -26.21728 -25.20505 -24.79835 -23.35234 -22.40670 -21.58827 -20.67600 -19.07904 -18.87666 -17.31607 -16.73485 -16.07436 -15.92379 -15.09585 -14.63234 -14.35053 -14.04682 -14.01541 -13.73188 -13.65611 -13.28918 -12.83071 -12.76193 -12.56123 -12.33426 -11.94714 -11.65215 -11.36922 -11.22175 -10.87932 -10.80908 -10.57533 -10.48152 -10.34305 -10.26159 -10.11505 -9.98693 -9.75866 -9.49106 -9.08342 -9.01934 -8.38627 -7.93216 -7.19617 -5.95315 -3.96743 3.35070 3.37472 3.42597 3.47764 3.93883 4.41114 4.48765 4.69071 4.72322 4.85263 5.02467 5.11730 5.18816 5.25790 5.36902 5.39593 5.52368 5.65660 5.73512 5.77637 5.89121 5.92807 6.09406 6.13497 6.24731 6.27586 6.36481 6.43660 6.47657 6.55700 6.63932 6.68656 6.74461 6.85984 6.93150 7.00710 7.03320 7.25973 7.39767 7.74370 8.08525 8.18593 8.24914 8.55161 8.97661 9.63152 11.08042 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.005030 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.537210 B = 5565.619749 C = 6031.865178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.472 4.472 8 H 0.056 0.944 9 C 0.062 3.938 10 C 0.085 3.915 11 N -0.516 5.516 12 C 0.044 3.956 13 C -0.118 4.118 14 C -0.106 4.106 15 C -0.094 4.094 16 H 0.095 0.905 17 C 0.238 3.762 18 O -0.370 6.370 19 C 0.014 3.986 20 C 0.021 3.979 21 O -0.382 6.382 22 C 0.069 3.931 23 C -0.204 4.204 24 C -0.218 4.218 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.013 0.987 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 -7.982 -14.790 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.126 4.126 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.061 3.939 10 C -0.041 4.041 11 N -0.239 5.239 12 C -0.084 4.084 13 C -0.155 4.155 14 C -0.143 4.143 15 C -0.113 4.113 16 H 0.113 0.887 17 C 0.143 3.857 18 O -0.291 6.291 19 C -0.062 4.062 20 C -0.055 4.055 21 O -0.303 6.303 22 C -0.060 4.060 23 C -0.242 4.242 24 C -0.256 4.256 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.147 0.853 28 H 0.124 0.876 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.503 -7.309 -14.650 16.441 hybrid contribution -0.092 -0.138 -0.042 0.171 sum -1.596 -7.446 -14.691 16.548 Atomic orbital electron populations 1.69779 1.06016 1.26744 1.49225 1.24816 0.94651 0.98807 0.94279 0.86704 0.79834 0.83219 0.78484 1.20029 1.21365 1.20613 1.20378 0.93816 0.89583 1.47086 0.92541 1.18969 0.94339 0.88522 0.92036 1.22041 0.95236 1.01734 0.85114 1.61856 1.12396 1.46333 1.03350 1.22664 0.95994 0.91701 0.98031 1.21634 0.97338 1.01765 0.94804 1.21474 0.96260 0.98205 0.98396 1.21634 0.95197 1.01307 0.93155 0.88708 1.24182 0.91879 0.85224 0.84455 1.89295 1.82280 1.32758 1.24728 1.24346 0.97978 1.01734 0.82171 1.24149 0.97835 0.86012 0.97511 1.88890 1.77982 1.34525 1.28888 1.21849 0.94355 0.99498 0.90309 1.23065 0.97969 1.07322 0.95891 1.23133 0.96431 1.02100 1.03901 0.92931 0.99075 0.85289 0.87587 0.96883 0.92581 0.91258 0.92412 0.92538 0.89843 0.90857 0.87679 0.88592 0.90775 0.95358 0.91373 0.90507 0.92039 0.91004 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 10.83 55.43 0.60 -23.90 16 2 C 0.08 2.08 5.23 -17.82 -0.09 1.98 16 3 Si 0.89 21.32 29.56 -169.99 -5.02 16.29 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.47 -12.86 9.01 -34.44 -0.31 -13.17 16 8 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 9 C 0.06 1.54 1.35 -155.66 -0.21 1.33 16 10 C 0.09 2.05 5.03 -3.82 -0.02 2.03 16 11 N -0.52 -11.06 4.80 -234.67 -1.13 -12.19 16 12 C 0.04 0.85 3.89 -3.84 -0.01 0.84 16 13 C -0.12 -1.95 6.09 -26.65 -0.16 -2.11 16 14 C -0.11 -1.61 4.99 -26.61 -0.13 -1.74 16 15 C -0.09 -1.51 2.46 -90.54 -0.22 -1.73 16 16 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.24 3.32 3.65 37.16 0.14 3.46 16 18 O -0.37 -5.05 9.97 -59.04 -0.59 -5.64 16 19 C 0.01 0.13 7.95 38.17 0.30 0.44 16 20 C 0.02 0.20 8.07 38.17 0.31 0.51 16 21 O -0.38 -5.06 10.61 -59.04 -0.63 -5.68 16 22 C 0.07 1.27 4.58 -3.84 -0.02 1.26 16 23 C -0.20 -4.76 9.88 -26.73 -0.26 -5.02 16 24 C -0.22 -4.77 7.11 -26.73 -0.19 -4.96 16 25 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 26 H -0.01 -0.21 7.92 -51.93 -0.41 -0.62 16 27 H 0.13 3.46 5.31 -51.93 -0.28 3.18 16 28 H 0.11 2.24 4.51 -51.93 -0.23 2.00 16 29 H 0.01 0.26 7.31 -51.93 -0.38 -0.12 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.89 7.60 -51.93 -0.39 0.50 16 33 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.03 0.54 7.68 -51.93 -0.40 0.14 16 40 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 41 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.06 1.37 8.11 -51.93 -0.42 0.95 16 43 H 0.07 1.46 6.02 -51.93 -0.31 1.15 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -29.04 334.33 -10.05 -39.08 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.43 Total: 3.89 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.89 Total: -16.89 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.53 Total: -36.09 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.21 Total: -11.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.04 -10.05 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719110680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.757 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.90 seconds