Wall clock time and date at job start Tue Mar 31 2020 07:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47089 * 2 1 4 4 C 1.53008 * 109.47019 * 172.85080 * 3 2 1 5 5 C 1.52994 * 109.46889 * 198.55442 * 4 3 2 6 6 C 1.52999 * 109.47189 * 292.85183 * 3 2 1 7 7 N 1.46494 * 109.47016 * 173.19149 * 6 3 2 8 8 C 1.46502 * 120.00075 * 285.77707 * 7 6 3 9 9 C 1.50693 * 109.47124 * 274.76801 * 8 7 6 10 10 H 1.08003 * 120.00451 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00090 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99680 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00211 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47104 * 89.99758 * 13 11 9 15 15 H 1.48497 * 109.47322 * 210.00105 * 13 11 9 16 16 H 1.48504 * 109.47095 * 329.99646 * 13 11 9 17 17 C 1.34774 * 119.99976 * 105.77959 * 7 6 3 18 18 O 1.21748 * 120.00097 * 186.77168 * 17 7 6 19 19 C 1.41793 * 120.00025 * 6.76727 * 17 7 6 20 20 C 1.33750 * 125.96325 * 177.55992 * 19 17 7 21 21 O 1.33802 * 114.15788 * 179.97438 * 20 19 17 22 22 C 1.45610 * 110.35909 * 359.97438 * 21 20 19 23 23 C 1.51443 * 125.96555 * 357.53798 * 19 17 7 24 24 H 1.08999 * 109.46712 * 65.47442 * 1 2 3 25 25 H 1.09002 * 109.46946 * 185.47413 * 1 2 3 26 26 H 1.09002 * 109.46897 * 305.47032 * 1 2 3 27 27 H 1.08999 * 109.47508 * 240.00018 * 2 1 3 28 28 H 1.08999 * 109.47043 * 119.99913 * 2 1 3 29 29 H 1.09004 * 109.46892 * 52.85419 * 3 2 1 30 30 H 1.08994 * 109.46971 * 318.55663 * 4 3 2 31 31 H 1.08999 * 109.46667 * 78.54971 * 4 3 2 32 32 H 1.08999 * 109.46707 * 182.04905 * 5 4 3 33 33 H 1.09004 * 109.47106 * 302.04512 * 5 4 3 34 34 H 1.08998 * 109.47715 * 62.05025 * 5 4 3 35 35 H 1.09001 * 109.46829 * 53.19328 * 6 3 2 36 36 H 1.08998 * 109.47277 * 293.19122 * 6 3 2 37 37 H 1.09001 * 109.47210 * 34.76917 * 8 7 6 38 38 H 1.09000 * 109.46899 * 154.76663 * 8 7 6 39 39 H 0.97004 * 119.99596 * 180.02562 * 12 11 9 40 40 H 1.07999 * 122.91507 * 359.70827 * 20 19 17 41 41 H 1.08991 * 110.49902 * 241.33771 * 22 21 20 42 42 H 1.09007 * 110.61069 * 118.72067 * 22 21 20 43 43 H 1.09003 * 110.66159 * 298.46415 * 23 19 17 44 44 H 1.09007 * 110.66175 * 61.57165 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5595 1.4463 0.1795 5 6 4.0154 2.8328 0.6381 6 6 1.6819 2.1101 -1.3293 7 7 2.0237 3.5333 -1.2686 8 6 1.1923 4.4538 -0.4890 9 6 0.0340 4.9211 -1.3321 10 1 -0.0721 4.5682 -2.3474 11 6 -0.8899 5.8002 -0.8079 12 7 -0.7605 6.2304 0.4282 13 14 -2.3260 6.3790 -1.8527 14 1 -3.4736 5.4538 -1.6728 15 1 -2.7230 7.7473 -1.4341 16 1 -1.9232 6.3960 -3.2820 17 6 3.1030 3.9959 -1.9301 18 8 3.4590 5.1507 -1.7819 19 6 3.8240 3.1376 -2.7984 20 6 4.8790 3.4816 -3.5451 21 8 5.3795 2.4815 -4.2796 22 6 4.6182 1.2602 -4.0582 23 6 3.5342 1.6713 -3.0421 24 1 -0.3633 0.4266 -0.9350 25 1 -0.3633 -1.0230 0.0980 26 1 -0.3633 0.5964 0.8370 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5760 1.9919 0.8192 30 1 3.8386 0.7057 0.9290 31 1 4.0380 1.2015 -0.7688 32 1 5.1014 2.8459 0.7309 33 1 3.7044 3.5781 -0.0940 34 1 3.5655 3.0624 1.6039 35 1 0.6133 2.0006 -1.5145 36 1 2.2409 1.6362 -2.1361 37 1 0.8143 3.9414 0.3957 38 1 1.7896 5.3130 -0.1838 39 1 -1.4107 6.8485 0.7971 40 1 5.2884 4.4809 -3.5574 41 1 5.2576 0.4822 -3.6413 42 1 4.1604 0.9197 -4.9870 43 1 3.6367 1.1004 -2.1191 44 1 2.5389 1.5414 -3.4672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734126366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:04 Heat of formation + Delta-G solvation = -22.350671 kcal Electronic energy + Delta-G solvation = -24075.508609 eV Core-core repulsion = 20802.298112 eV Total energy + Delta-G solvation = -3273.210496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17492 -39.12953 -36.99441 -34.00412 -33.21580 -32.09790 -31.70304 -29.77710 -28.00094 -27.03465 -24.61698 -23.75587 -23.05067 -21.70583 -21.20204 -19.63328 -18.82753 -16.83073 -16.70709 -16.26973 -15.67001 -15.47605 -15.05511 -14.56066 -14.23836 -13.95028 -13.44953 -13.37934 -13.13323 -12.82989 -12.48577 -12.38504 -12.35154 -12.06697 -11.89643 -11.84773 -11.58727 -11.23830 -11.20526 -11.00163 -10.79371 -10.65156 -10.45580 -10.27469 -10.22778 -10.02332 -9.60230 -9.49038 -8.90706 -8.39814 -8.23955 -7.40102 -6.00400 -4.05219 1.73882 3.30777 3.31948 3.37650 3.41661 4.01211 4.12541 4.43613 4.51029 4.77586 4.82134 4.99688 5.07640 5.17267 5.25719 5.32849 5.43606 5.47431 5.56906 5.67215 5.69633 5.71753 5.73483 5.87928 5.91939 6.06694 6.15095 6.19857 6.28796 6.32208 6.35192 6.37039 6.49760 6.60544 6.72604 6.89113 6.99731 7.27070 7.54674 7.65239 7.97186 8.29433 8.55750 8.94861 9.18895 9.59801 11.07101 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.006740 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.154352 B = 4153.153170 C = 5032.755553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.118 4.118 5 C -0.170 4.170 6 C 0.058 3.942 7 N -0.585 5.585 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.582 3.418 18 O -0.561 6.561 19 C -0.310 4.310 20 C 0.130 3.870 21 O -0.307 6.307 22 C 0.038 3.962 23 C -0.127 4.127 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.029 0.971 38 H 0.046 0.954 39 H 0.262 0.738 40 H 0.192 0.808 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 -15.001 -4.580 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.128 4.128 4 C -0.155 4.155 5 C -0.227 4.227 6 C -0.065 4.065 7 N -0.315 5.315 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.373 3.627 18 O -0.444 6.444 19 C -0.315 4.315 20 C 0.062 3.938 21 O -0.218 6.218 22 C -0.036 4.036 23 C -0.162 4.162 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.208 0.792 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.718 -14.305 -4.516 17.350 hybrid contribution -1.263 0.276 -0.230 1.313 sum 7.455 -14.029 -4.746 16.580 Atomic orbital electron populations 1.21831 0.95735 1.00877 1.02793 1.21505 0.96101 0.96153 1.01282 1.21671 0.95553 0.95588 1.00016 1.21713 0.95525 0.97750 1.00544 1.22182 0.99579 0.98144 1.02788 1.22931 1.02492 0.82591 0.98483 1.47989 1.26307 1.08206 1.49020 1.19207 0.89017 0.88587 0.90428 1.21459 1.08640 1.26957 0.99402 0.92575 1.24925 0.98095 0.95976 0.95067 1.69941 1.36285 1.32968 1.14082 0.86541 0.82400 0.78076 0.80660 1.20709 1.21119 1.19953 1.15752 0.80559 0.86425 0.79943 1.90801 1.68697 1.18671 1.66217 1.21065 1.04236 0.96641 1.09565 1.23391 0.90938 0.92703 0.86779 1.86676 1.54079 1.19104 1.61934 1.24227 0.93119 0.86200 1.00105 1.22393 0.99017 0.94710 1.00115 0.92196 0.93388 0.92386 0.92453 0.92288 0.90361 0.92839 0.91942 0.94084 0.89736 0.93140 0.90964 0.86582 0.95295 0.93605 0.92800 0.79159 0.89227 0.89203 0.87408 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.59 37.16 0.36 -1.53 16 2 C -0.11 -1.29 5.36 -26.73 -0.14 -1.44 16 3 C -0.11 -1.58 1.97 -90.61 -0.18 -1.76 16 4 C -0.12 -1.61 5.34 -26.73 -0.14 -1.76 16 5 C -0.17 -2.82 9.54 37.15 0.35 -2.47 16 6 C 0.06 0.95 4.73 -4.05 -0.02 0.93 16 7 N -0.59 -12.37 1.33 -178.43 -0.24 -12.61 16 8 C 0.25 6.48 5.01 -5.20 -0.03 6.46 16 9 C -0.53 -14.95 9.38 -34.44 -0.32 -15.27 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 13 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 17 C 0.58 12.29 4.73 -14.90 -0.07 12.22 16 18 O -0.56 -14.19 15.98 5.15 0.08 -14.11 16 19 C -0.31 -5.00 5.89 -104.47 -0.62 -5.62 16 20 C 0.13 1.85 11.25 29.16 0.33 2.18 16 21 O -0.31 -3.85 11.03 -13.44 -0.15 -4.00 16 22 C 0.04 0.36 8.23 37.77 0.31 0.67 16 23 C -0.13 -1.49 4.40 -26.91 -0.12 -1.61 16 24 H 0.06 0.76 6.75 -51.93 -0.35 0.41 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.63 7.99 -51.93 -0.42 0.21 16 29 H 0.08 1.36 7.04 -51.93 -0.37 1.00 16 30 H 0.05 0.65 7.90 -51.93 -0.41 0.23 16 31 H 0.06 0.77 4.59 -51.93 -0.24 0.54 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.67 3.00 -51.93 -0.16 1.52 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.27 6.48 -51.93 -0.34 0.93 16 36 H 0.12 1.58 1.48 -105.04 -0.16 1.43 16 37 H 0.03 0.78 7.17 -51.93 -0.37 0.41 16 38 H 0.05 1.37 7.21 -51.93 -0.37 1.00 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.19 2.56 7.99 -52.49 -0.42 2.14 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.11 1.17 3.58 -51.93 -0.19 0.99 16 44 H 0.10 1.10 6.91 -51.93 -0.36 0.74 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -33.12 334.55 -6.57 -39.69 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.64 Total: 2.35 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.38 Total: -7.32 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.50 Total: -38.61 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.07 Total: -18.11 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.12 -6.57 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734126366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.344 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds