Wall clock time and date at job start Tue Mar 31 2020 08:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46786 * 2 1 4 4 C 1.52999 * 109.47663 * 240.00243 * 2 1 3 5 5 C 1.53000 * 109.47443 * 119.99510 * 2 1 3 6 6 N 1.46501 * 109.46470 * 64.34701 * 5 2 1 7 7 C 1.46500 * 120.00346 * 268.03771 * 6 5 2 8 8 C 1.50698 * 109.47192 * 262.15604 * 7 6 5 9 9 H 1.08003 * 120.00328 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99662 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99975 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00129 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47112 * 89.99824 * 12 10 8 14 14 H 1.48500 * 109.46868 * 209.99680 * 12 10 8 15 15 H 1.48500 * 109.47111 * 329.99783 * 12 10 8 16 16 C 1.34781 * 119.99879 * 88.04471 * 6 5 2 17 17 O 1.21601 * 120.00143 * 3.01830 * 16 6 5 18 18 C 1.47487 * 120.00139 * 183.01965 * 16 6 5 19 19 C 1.32399 * 118.48092 * 172.96249 * 18 16 6 20 20 C 1.50464 * 122.29281 * 180.38663 * 19 18 16 21 21 C 1.53235 * 109.44914 * 342.43050 * 20 19 18 22 22 C 1.53472 * 108.27659 * 47.14522 * 21 20 19 23 23 O 1.35502 * 118.48271 * 352.94209 * 18 16 6 24 24 H 1.09000 * 109.47290 * 299.99787 * 1 2 3 25 25 H 1.09002 * 109.47226 * 60.00090 * 1 2 3 26 26 H 1.08998 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46764 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47165 * 299.99948 * 3 2 1 29 29 H 1.09000 * 109.47032 * 60.00055 * 3 2 1 30 30 H 1.09002 * 109.46677 * 305.11608 * 4 2 1 31 31 H 1.09001 * 109.47133 * 65.10901 * 4 2 1 32 32 H 1.08999 * 109.47740 * 185.11552 * 4 2 1 33 33 H 1.09000 * 109.47195 * 304.35437 * 5 2 1 34 34 H 1.08998 * 109.47247 * 184.34983 * 5 2 1 35 35 H 1.08995 * 109.46835 * 22.16072 * 7 6 5 36 36 H 1.08999 * 109.46633 * 142.15512 * 7 6 5 37 37 H 0.96991 * 120.00382 * 179.97438 * 11 10 8 38 38 H 1.08000 * 118.85489 * 0.36540 * 19 18 16 39 39 H 1.09003 * 109.46887 * 222.43870 * 20 19 18 40 40 H 1.08997 * 109.47350 * 102.42878 * 20 19 18 41 41 H 1.08998 * 109.70424 * 166.84747 * 21 20 19 42 42 H 1.08997 * 109.71020 * 287.43370 * 21 20 19 43 43 H 1.08996 * 109.69958 * 56.76935 * 22 21 20 44 44 H 1.08997 * 109.69090 * 177.35785 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 7 1.6390 -2.1293 1.1981 7 6 0.3805 -2.5554 1.8151 8 6 0.6583 -3.1204 3.1842 9 1 1.6710 -3.1578 3.5577 10 6 -0.3806 -3.5885 3.9605 11 7 -0.1382 -4.0820 5.1553 12 14 -2.1322 -3.5231 3.3149 13 1 -2.4385 -4.7803 2.5864 14 1 -3.0737 -3.3684 4.4528 15 1 -2.2768 -2.3685 2.3922 16 6 2.4281 -3.0327 0.5834 17 8 3.4984 -2.6894 0.1195 18 6 1.9933 -4.4378 0.4735 19 6 2.7213 -5.2686 -0.2564 20 6 2.3526 -6.7166 -0.4340 21 6 1.3540 -7.1259 0.6538 22 6 0.2600 -6.0522 0.7315 23 8 0.8677 -4.8187 1.1245 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6039 -1.7190 -1.2962 31 1 1.7535 -0.1572 -2.1369 32 1 3.1262 -0.8012 -1.2046 33 1 1.6145 -0.2543 2.1375 34 1 3.1273 -0.6541 1.2891 35 1 -0.2886 -1.6996 1.9039 36 1 -0.0876 -3.3197 1.1947 37 1 -0.8690 -4.4110 5.7016 38 1 3.6104 -4.8939 -0.7416 39 1 3.2488 -7.3320 -0.3547 40 1 1.8998 -6.8585 -1.4152 41 1 0.9078 -8.0875 0.4000 42 1 1.8654 -7.1997 1.6134 43 1 -0.2094 -5.9346 -0.2452 44 1 -0.4894 -6.3441 1.4671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742230405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:55 Heat of formation + Delta-G solvation = -57.966404 kcal Electronic energy + Delta-G solvation = -24332.249439 eV Core-core repulsion = 21057.494528 eV Total energy + Delta-G solvation = -3274.754911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21746 -38.74040 -36.70895 -34.59594 -33.27965 -32.21465 -31.05334 -28.21449 -27.01498 -26.90867 -26.28291 -25.09263 -23.30234 -22.27797 -20.09450 -18.37953 -18.19833 -17.00194 -16.58442 -16.13150 -15.27818 -15.20864 -14.75485 -14.33480 -14.12012 -13.81262 -13.51219 -13.37664 -13.26624 -12.90295 -12.77116 -12.34514 -12.24708 -12.06284 -11.88992 -11.47142 -11.35550 -11.17115 -11.06453 -10.84032 -10.75970 -10.58393 -10.43578 -10.37843 -10.25250 -10.10072 -9.95124 -9.46687 -9.16128 -8.54585 -8.02282 -7.52642 -6.04860 -4.00024 2.01604 3.22847 3.31779 3.32509 3.64351 3.89766 4.11153 4.39247 5.01263 5.06516 5.11638 5.13821 5.20205 5.26226 5.28728 5.46618 5.58027 5.78904 5.79963 5.80619 5.84391 5.87161 6.02958 6.07728 6.09481 6.11914 6.14784 6.24836 6.27780 6.37652 6.40938 6.47571 6.50827 6.53573 6.70380 6.73724 6.77155 7.06573 7.38891 7.62937 7.98011 8.20544 8.53775 8.87996 9.01060 9.55784 11.09038 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.009345 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.698413 B = 2995.489140 C = 4518.266104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.127 3.873 6 N -0.573 5.573 7 C 0.199 3.801 8 C -0.507 4.507 9 H 0.073 0.927 10 C 0.076 3.924 11 N -0.900 5.900 12 Si 0.867 3.133 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.569 3.431 17 O -0.556 6.556 18 C 0.059 3.941 19 C -0.231 4.231 20 C -0.076 4.076 21 C -0.160 4.160 22 C 0.046 3.954 23 O -0.255 6.255 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.262 0.738 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 1.044 -11.682 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.004 3.996 6 N -0.300 5.300 7 C 0.079 3.921 8 C -0.545 4.545 9 H 0.091 0.909 10 C -0.125 4.125 11 N -0.540 5.540 12 Si 0.695 3.305 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.191 1.191 16 C 0.357 3.643 17 O -0.438 6.438 18 C 0.011 3.989 19 C -0.253 4.253 20 C -0.113 4.113 21 C -0.197 4.197 22 C -0.029 4.029 23 O -0.167 6.167 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.349 1.279 -11.562 11.638 hybrid contribution -1.054 -0.393 -0.165 1.137 sum -0.705 0.885 -11.727 11.782 Atomic orbital electron populations 1.21951 0.94697 1.02324 1.00966 1.20976 0.95932 0.95316 0.96436 1.21780 1.00957 0.95155 1.01430 1.21855 1.01930 0.99506 0.95638 1.21469 1.00394 0.80998 0.96753 1.47843 1.23028 1.06734 1.52439 1.20312 0.81205 0.95664 0.94940 1.21223 0.95925 1.39492 0.97901 0.90937 1.24732 0.98273 0.94880 0.94632 1.69896 1.31984 1.42081 1.10004 0.87008 0.85684 0.79058 0.78776 1.20103 1.21425 1.19092 1.17820 0.83886 0.84154 0.78441 1.90705 1.22500 1.79689 1.50924 1.20446 0.89494 0.93353 0.95642 1.22786 1.02018 0.94858 1.05633 1.20352 0.99150 0.93389 0.98447 1.22218 0.97963 0.98943 1.00594 1.23000 0.95247 0.84156 1.00513 1.86890 1.36110 1.36709 1.57020 0.92666 0.93405 0.92033 0.92634 0.92869 0.92651 0.93239 0.93933 0.91598 0.90220 0.90630 0.95060 0.92426 0.92813 0.85315 0.90628 0.91267 0.90775 0.90245 0.92795 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.50 37.16 0.28 -1.85 16 2 C -0.09 -1.30 0.85 -154.51 -0.13 -1.43 16 3 C -0.14 -1.70 8.47 37.16 0.31 -1.38 16 4 C -0.13 -2.07 7.04 37.16 0.26 -1.81 16 5 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 6 N -0.57 -11.96 2.02 -176.31 -0.36 -12.32 16 7 C 0.20 4.50 2.65 -5.19 -0.01 4.48 16 8 C -0.51 -13.61 8.42 -34.44 -0.29 -13.90 16 9 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 10 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.90 -26.61 13.96 55.43 0.77 -25.83 16 12 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 16 C 0.57 12.14 5.79 -12.49 -0.07 12.07 16 17 O -0.56 -12.25 13.66 5.28 0.07 -12.18 16 18 C 0.06 1.19 6.41 -37.74 -0.24 0.95 16 19 C -0.23 -4.02 9.54 -36.35 -0.35 -4.37 16 20 C -0.08 -1.05 6.23 -27.88 -0.17 -1.22 16 21 C -0.16 -2.28 6.23 -26.36 -0.16 -2.44 16 22 C 0.05 0.77 7.08 37.40 0.26 1.03 16 23 O -0.25 -5.28 4.98 -18.20 -0.09 -5.37 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.03 6.19 -51.93 -0.32 0.71 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.86 6.57 -51.93 -0.34 0.52 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.11 7.09 -51.93 -0.37 0.74 16 33 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 34 H 0.08 1.40 7.44 -51.93 -0.39 1.02 16 35 H 0.03 0.70 5.64 -51.93 -0.29 0.41 16 36 H 0.06 1.31 4.76 -52.16 -0.25 1.06 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 38 H 0.13 2.25 7.30 -52.49 -0.38 1.87 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -30.01 336.17 -7.06 -37.06 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.42 Total: 3.63 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.43 Total: -5.59 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.42 Total: -38.15 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.02 Total: -17.55 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.01 -7.06 -37.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742230405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.903 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds