Wall clock time and date at job start Tue Mar 31 2020 07:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99689 * 2 1 4 4 C 1.53004 * 109.47226 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46801 * 65.00052 * 4 3 2 6 6 C 1.46499 * 119.99857 * 266.98248 * 5 4 3 7 7 C 1.50697 * 109.47545 * 270.00582 * 6 5 4 8 8 H 1.08001 * 119.99806 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00008 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99653 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47246 * 89.99628 * 11 9 7 13 13 H 1.48503 * 109.47137 * 209.99582 * 11 9 7 14 14 H 1.48499 * 109.47278 * 329.99780 * 11 9 7 15 15 C 1.34770 * 120.00295 * 86.98876 * 5 4 3 16 16 O 1.21617 * 120.00207 * 185.04134 * 15 5 4 17 17 C 1.47107 * 119.99778 * 5.04540 * 15 5 4 18 18 C 1.50701 * 119.99397 * 260.18862 * 17 15 5 19 19 C 1.32989 * 120.00502 * 80.18985 * 17 15 5 20 20 C 1.51446 * 126.34310 * 179.97438 * 19 17 15 21 21 C 1.54286 * 106.84978 * 180.33780 * 20 19 17 22 22 C 1.54984 * 103.75052 * 23.12283 * 21 20 19 23 23 C 1.51846 * 126.33666 * 359.97438 * 19 17 15 24 24 H 1.09006 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47657 * 300.00124 * 1 2 3 26 26 H 1.08997 * 109.46839 * 60.00637 * 1 2 3 27 27 H 1.08999 * 109.47493 * 59.99635 * 3 2 1 28 28 H 1.08997 * 109.47475 * 299.99479 * 3 2 1 29 29 H 1.09000 * 109.46899 * 305.00142 * 4 3 2 30 30 H 1.08999 * 109.47282 * 185.00082 * 4 3 2 31 31 H 1.09001 * 109.47240 * 30.00730 * 6 5 4 32 32 H 1.09007 * 109.46920 * 150.00070 * 6 5 4 33 33 H 0.97003 * 119.99682 * 180.02562 * 10 9 7 34 34 H 1.08996 * 109.47056 * 264.93767 * 18 17 15 35 35 H 1.09002 * 109.47427 * 24.94545 * 18 17 15 36 36 H 1.09010 * 109.46706 * 144.94129 * 18 17 15 37 37 H 1.09000 * 109.98151 * 299.68549 * 20 19 17 38 38 H 1.08992 * 109.98067 * 60.98875 * 20 19 17 39 39 H 1.08995 * 110.56970 * 141.69140 * 21 20 19 40 40 H 1.08995 * 110.56624 * 264.55925 * 21 20 19 41 41 H 1.08997 * 110.83612 * 204.70540 * 22 21 20 42 42 H 1.09002 * 110.83438 * 81.12229 * 22 21 20 43 43 H 1.09002 * 110.44097 * 274.96397 * 23 19 17 44 44 H 1.08997 * 110.44418 * 37.36585 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1699 -0.8864 -1.3208 7 6 5.5906 -1.2225 -0.9472 8 1 6.2807 -0.4344 -0.6844 9 6 6.0097 -2.5361 -0.9420 10 7 5.1694 -3.4956 -1.2625 11 14 7.7710 -2.9526 -0.4795 12 1 7.8578 -3.1787 0.9856 13 1 8.1932 -4.1828 -1.1961 14 1 8.6621 -1.8274 -0.8603 15 6 4.2048 1.3275 -2.3379 16 8 4.4818 0.8051 -3.4006 17 6 4.1189 2.7927 -2.2388 18 6 2.8762 3.5077 -2.7034 19 6 5.1377 3.4864 -1.7393 20 6 5.2035 4.9902 -1.5725 21 6 6.5835 5.3125 -0.9624 22 6 7.4535 4.0909 -1.3533 23 6 6.4503 2.9172 -1.2307 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5687 0.8427 30 1 3.9783 2.1767 0.0902 31 1 3.4862 -1.3778 -0.6286 32 1 3.9697 -1.2311 -2.3354 33 1 5.4642 -4.4198 -1.2584 34 1 3.0144 3.8464 -3.7302 35 1 2.0263 2.8268 -2.6566 36 1 2.6893 4.3670 -2.0593 37 1 5.1020 5.4774 -2.5422 38 1 4.4123 5.3255 -0.9020 39 1 6.9898 6.2263 -1.3957 40 1 6.5118 5.4004 0.1217 41 1 8.2826 3.9666 -0.6567 42 1 7.8163 4.1849 -2.3768 43 1 6.3530 2.6069 -0.1903 44 1 6.7664 2.0775 -1.8496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749304048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:19 Heat of formation + Delta-G solvation = -82.021163 kcal Electronic energy + Delta-G solvation = -23464.430277 eV Core-core repulsion = 20188.632274 eV Total energy + Delta-G solvation = -3275.798003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.51358 -37.78448 -37.28690 -34.69647 -33.31545 -32.39342 -29.51736 -28.92452 -27.52004 -27.14044 -25.92820 -24.18061 -22.62514 -22.29849 -20.67709 -19.33436 -17.31379 -16.48486 -16.29173 -16.12222 -15.70952 -15.38766 -15.04857 -14.81557 -14.26288 -14.16833 -13.51334 -13.31619 -13.12461 -12.88084 -12.46680 -12.32927 -12.21133 -11.87030 -11.72798 -11.61421 -11.49675 -11.17989 -11.07718 -10.93116 -10.83819 -10.83578 -10.80240 -10.58067 -10.37052 -10.07836 -9.52731 -9.38376 -8.86103 -8.40864 -8.30356 -7.53820 -5.93850 -3.98039 2.08535 3.34763 3.40919 3.43835 3.49729 4.02233 4.11928 4.49812 4.60069 4.77381 5.00584 5.07240 5.19462 5.31234 5.39856 5.40952 5.47687 5.50778 5.55964 5.60055 5.64223 5.65387 5.72538 5.77150 5.81280 5.86199 5.87867 5.89830 6.00903 6.07055 6.10960 6.28411 6.34853 6.36878 6.61447 6.97054 7.32522 7.45076 7.63478 7.68833 8.04515 8.36248 8.55695 9.00137 9.19325 9.65843 11.14163 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.007404 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.138459 B = 3780.710543 C = 5478.709094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.044 3.956 4 C 0.114 3.886 5 N -0.581 5.581 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.550 3.450 16 O -0.541 6.541 17 C -0.153 4.153 18 C -0.098 4.098 19 C -0.098 4.098 20 C -0.089 4.089 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.099 4.099 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 17.463 4.145 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.034 4.034 4 C -0.011 4.011 5 N -0.312 5.312 6 C 0.130 3.870 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.337 3.663 16 O -0.419 6.419 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.136 4.136 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.781 16.774 3.570 17.804 hybrid contribution 0.695 -0.118 0.318 0.773 sum -4.086 16.656 3.888 17.585 Atomic orbital electron populations 1.22690 0.82138 1.02542 0.99070 1.88096 1.18648 1.27113 1.95135 1.23156 0.95427 0.85283 0.99543 1.21476 0.91074 0.99167 0.89364 1.48132 1.63965 1.10203 1.08853 1.19308 0.96317 0.72481 0.98941 1.21472 0.96521 0.92279 1.46080 0.92605 1.24913 0.97458 0.96255 0.95429 1.69949 1.34793 0.99959 1.48498 0.86565 0.85045 0.77926 0.78271 1.20724 1.21174 1.19968 1.18212 0.77656 0.86073 0.84377 1.90768 1.48680 1.74297 1.28199 1.20985 0.97195 0.94105 1.03304 1.20601 0.94396 0.99244 1.01246 1.22336 0.94840 0.95204 0.97495 1.21142 0.97758 0.92672 1.00983 1.22360 0.95008 0.98114 1.00541 1.22480 0.97473 0.94413 1.01531 1.21496 0.92051 0.98242 1.01826 0.89811 0.94722 0.94642 0.93265 0.93519 0.89202 0.90021 0.93838 0.94216 0.92872 0.91148 0.91989 0.91579 0.90865 0.90837 0.91627 0.91452 0.91326 0.91405 0.90076 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.59 9.84 -35.23 -0.35 -6.93 16 3 C 0.04 0.66 6.27 37.16 0.23 0.89 16 4 C 0.11 1.97 5.63 -4.04 -0.02 1.94 16 5 N -0.58 -12.85 2.41 -176.45 -0.43 -13.28 16 6 C 0.25 6.80 5.04 -5.20 -0.03 6.77 16 7 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 11 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.55 12.17 6.17 -12.67 -0.08 12.09 16 16 O -0.54 -14.65 16.66 5.26 0.09 -14.56 16 17 C -0.15 -2.53 4.30 -102.84 -0.44 -2.97 16 18 C -0.10 -1.27 9.38 36.01 0.34 -0.93 16 19 C -0.10 -1.42 5.20 -100.24 -0.52 -1.94 16 20 C -0.09 -0.95 5.60 -26.84 -0.15 -1.10 16 21 C -0.12 -1.21 6.87 -25.01 -0.17 -1.38 16 22 C -0.12 -1.46 6.95 -24.69 -0.17 -1.63 16 23 C -0.10 -1.53 6.09 -26.33 -0.16 -1.69 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.67 6.60 -51.93 -0.34 0.33 16 29 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 30 H 0.08 1.20 6.22 -51.93 -0.32 0.88 16 31 H 0.04 1.24 7.40 -51.93 -0.38 0.85 16 32 H 0.04 1.24 7.36 -51.92 -0.38 0.86 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.82 6.89 -51.93 -0.36 0.46 16 36 H 0.07 0.66 7.35 -51.92 -0.38 0.28 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.52 7.80 -51.93 -0.41 1.11 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -34.73 357.67 -7.66 -42.39 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.60 Total: -1.46 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.48 Total: -2.23 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.31 Total: -39.86 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.26 Total: -21.49 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.73 -7.66 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749304048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.632 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds