Wall clock time and date at job start Tue Mar 31 2020 07:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33454 * 118.46053 * 2 1 4 4 C 1.41802 * 118.78439 * 0.43644 * 3 2 1 5 5 O 1.21737 * 120.00172 * 263.99119 * 4 3 2 6 6 N 1.34782 * 119.99322 * 84.27278 * 4 3 2 7 7 C 1.46499 * 120.00434 * 354.16070 * 6 4 3 8 8 C 1.50702 * 109.46908 * 90.00112 * 7 6 4 9 9 H 1.07994 * 120.00248 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99637 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00584 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99751 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46708 * 90.00169 * 12 10 8 14 14 H 1.48498 * 109.46992 * 209.99825 * 12 10 8 15 15 H 1.48492 * 109.47063 * 330.00488 * 12 10 8 16 16 C 1.46497 * 119.99494 * 174.16406 * 6 4 3 17 17 C 1.52999 * 109.47394 * 95.50349 * 16 6 4 18 18 C 1.53002 * 109.47675 * 173.87417 * 17 16 6 19 19 C 1.53008 * 109.46857 * 293.87437 * 17 16 6 20 20 C 1.50415 * 122.43002 * 180.15888 * 3 2 1 21 21 C 1.53212 * 109.56020 * 342.58875 * 20 3 2 22 22 C 1.53485 * 108.26123 * 47.35543 * 21 20 3 23 23 O 1.34349 * 118.45856 * 180.27621 * 2 1 3 24 24 H 1.08999 * 109.47416 * 94.36301 * 1 2 3 25 25 H 1.08996 * 109.46918 * 214.36407 * 1 2 3 26 26 H 1.08996 * 109.47042 * 334.36649 * 1 2 3 27 27 H 1.08993 * 109.47052 * 210.00099 * 7 6 4 28 28 H 1.09004 * 109.47053 * 330.00334 * 7 6 4 29 29 H 0.97000 * 120.00152 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.47014 * 215.50219 * 16 6 4 31 31 H 1.09001 * 109.47302 * 335.50045 * 16 6 4 32 32 H 1.08999 * 109.46979 * 53.86947 * 17 16 6 33 33 H 1.09004 * 109.47217 * 59.99280 * 18 17 16 34 34 H 1.08997 * 109.47317 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.46607 * 300.00096 * 18 17 16 36 36 H 1.09000 * 109.47056 * 185.08464 * 19 17 16 37 37 H 1.09004 * 109.46605 * 305.07828 * 19 17 16 38 38 H 1.08993 * 109.47066 * 65.08230 * 19 17 16 39 39 H 1.08998 * 109.45799 * 102.61528 * 20 3 2 40 40 H 1.08996 * 109.46181 * 222.56189 * 20 3 2 41 41 H 1.09000 * 109.70547 * 167.04354 * 21 20 3 42 42 H 1.09001 * 109.70735 * 287.61951 * 21 20 3 43 43 H 1.09004 * 109.70340 * 56.99068 * 22 21 20 44 44 H 1.08995 * 109.70756 * 177.56149 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1430 1.1733 0.0000 4 6 1.3758 2.3658 0.0095 5 8 1.1322 2.9412 -1.0353 6 7 0.9211 2.8652 1.1759 7 6 1.1084 2.1116 2.4181 8 6 2.4186 2.5042 3.0510 9 1 3.0483 3.2416 2.5757 10 6 2.8131 1.9220 4.2369 11 7 2.0464 1.0236 4.8155 12 14 4.4374 2.4081 5.0211 13 1 4.2192 3.5517 5.9429 14 1 4.9839 1.2561 5.7822 15 1 5.3999 2.8030 3.9616 16 6 0.2393 4.1616 1.2013 17 6 -1.2737 3.9436 1.1379 18 6 -1.9902 5.2834 1.3179 19 6 -1.6462 3.3445 -0.2198 20 6 3.6435 1.2774 -0.0035 21 6 4.2516 -0.0619 0.4252 22 6 3.5561 -1.1803 -0.3630 23 8 2.1472 -1.1811 -0.0057 24 1 -0.3634 -0.0782 -1.0247 25 1 -0.3633 -0.8483 0.5800 26 1 -0.3633 0.9265 0.4446 27 1 0.2920 2.3344 3.1049 28 1 1.1169 1.0441 2.1977 29 1 2.3238 0.6142 5.6500 30 1 0.4924 4.6871 2.1222 31 1 0.5570 4.7561 0.3447 32 1 -1.5759 3.2604 1.9316 33 1 -1.6879 5.9667 0.5242 34 1 -3.0681 5.1280 1.2732 35 1 -1.7248 5.7102 2.2851 36 1 -2.7308 3.2730 -0.3002 37 1 -1.2642 3.9836 -1.0160 38 1 -1.2088 2.3503 -0.3106 39 1 3.9877 1.5278 -1.0070 40 1 3.9551 2.0567 0.6919 41 1 5.3195 -0.0675 0.2065 42 1 4.0945 -0.2118 1.4934 43 1 3.6639 -0.9980 -1.4323 44 1 4.0014 -2.1417 -0.1075 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755698074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:40 Heat of formation + Delta-G solvation = -76.595809 kcal Electronic energy + Delta-G solvation = -24236.737493 eV Core-core repulsion = 20961.174751 eV Total energy + Delta-G solvation = -3275.562742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28745 -38.64535 -35.86246 -34.17212 -33.34623 -32.64940 -32.09141 -27.87981 -27.39770 -26.72708 -26.07288 -24.46067 -23.00126 -22.28661 -20.40764 -19.19389 -17.79150 -16.69136 -16.44320 -15.88768 -15.65010 -15.06341 -14.60317 -14.33401 -14.21749 -13.74918 -13.61090 -13.09270 -12.77503 -12.69513 -12.48916 -12.31321 -12.26475 -11.89073 -11.81928 -11.71138 -11.47644 -11.32005 -11.02327 -10.86073 -10.78127 -10.61683 -10.48074 -10.40982 -10.28057 -10.08373 -10.00619 -9.62357 -8.97938 -8.51348 -7.66506 -7.51007 -6.11840 -4.17327 2.47242 3.22748 3.30322 3.31958 3.40733 3.61970 4.21992 4.39366 5.08239 5.13509 5.21235 5.28583 5.30784 5.35497 5.48668 5.52699 5.64239 5.75483 5.78106 5.86370 5.91734 5.95406 6.05301 6.07100 6.10343 6.18020 6.26071 6.32628 6.38854 6.43220 6.47297 6.59900 6.70127 6.76720 6.82006 6.88271 6.96356 7.29648 7.65929 7.82166 7.86352 8.15447 8.44039 8.86340 9.12321 9.48638 10.95002 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.009159 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.766931 B = 3056.362429 C = 4634.937628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.115 3.885 3 C -0.253 4.253 4 C 0.578 3.422 5 O -0.574 6.574 6 N -0.591 5.591 7 C 0.238 3.762 8 C -0.526 4.526 9 H 0.058 0.942 10 C 0.065 3.935 11 N -0.890 5.890 12 Si 0.889 3.111 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.123 3.877 17 C -0.113 4.113 18 C -0.141 4.141 19 C -0.138 4.138 20 C -0.053 4.053 21 C -0.155 4.155 22 C 0.063 3.937 23 O -0.315 6.315 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -0.899 -7.395 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 C -0.257 4.257 4 C 0.368 3.632 5 O -0.456 6.456 6 N -0.321 5.321 7 C 0.118 3.882 8 C -0.565 4.565 9 H 0.076 0.924 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.717 3.283 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.001 4.001 17 C -0.132 4.132 18 C -0.199 4.199 19 C -0.195 4.195 20 C -0.090 4.090 21 C -0.193 4.193 22 C -0.012 4.012 23 O -0.229 6.229 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.079 -0.922 -7.694 8.023 hybrid contribution 1.214 0.346 0.795 1.491 sum -0.865 -0.576 -6.899 6.977 Atomic orbital electron populations 1.21016 0.88941 1.04463 1.02813 1.20573 0.93166 0.83983 0.95488 1.19620 0.96858 0.93133 1.16079 1.16660 0.78412 0.84707 0.83450 1.90711 1.60318 1.62433 1.32148 1.48344 1.54743 1.19956 1.09039 1.19407 0.96878 0.92228 0.79675 1.21421 1.04699 1.23669 1.06681 0.92383 1.24889 0.97080 0.94895 0.96838 1.69923 1.37301 1.27211 1.18473 0.86632 0.84011 0.78131 0.79518 1.20643 1.21154 1.19840 1.21375 0.90450 0.86075 1.02211 1.21514 0.96141 0.97238 0.98352 1.21747 0.99677 0.96993 1.01463 1.21834 0.99306 1.01599 0.96798 1.20027 0.89902 0.98056 1.01037 1.22158 0.99676 0.95127 1.02316 1.23355 0.78960 1.00260 0.98616 1.86085 1.24481 1.28608 1.83685 0.90694 0.90459 0.89225 0.95049 0.93924 0.92715 0.90820 0.91011 0.91120 0.92896 0.93025 0.92709 0.94024 0.92399 0.92656 0.92016 0.89465 0.90504 0.89416 0.91913 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.12 36.00 0.33 -1.65 16 2 C 0.12 2.20 5.67 -35.98 -0.20 2.00 16 3 C -0.25 -5.12 4.07 -105.07 -0.43 -5.55 16 4 C 0.58 12.37 3.99 -14.89 -0.06 12.31 16 5 O -0.57 -13.09 15.14 5.16 0.08 -13.01 16 6 N -0.59 -12.49 1.85 -178.42 -0.33 -12.82 16 7 C 0.24 5.67 4.52 -5.19 -0.02 5.65 16 8 C -0.53 -13.57 9.14 -34.44 -0.31 -13.89 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 12 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 C 0.12 2.29 4.93 -4.04 -0.02 2.27 16 17 C -0.11 -1.82 3.12 -90.62 -0.28 -2.10 16 18 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 19 C -0.14 -2.21 7.94 37.16 0.30 -1.92 16 20 C -0.05 -0.98 5.89 -27.91 -0.16 -1.14 16 21 C -0.16 -2.47 6.23 -26.37 -0.16 -2.64 16 22 C 0.06 0.90 7.15 37.41 0.27 1.17 16 23 O -0.32 -5.64 10.40 -14.88 -0.15 -5.80 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.09 1.64 3.69 -51.93 -0.19 1.45 16 27 H 0.03 0.79 8.04 -51.93 -0.42 0.37 16 28 H 0.04 1.08 5.60 -51.93 -0.29 0.79 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 31 H 0.07 1.36 7.34 -51.93 -0.38 0.98 16 32 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 38 H 0.05 0.97 4.71 -51.93 -0.24 0.72 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.78 7.92 -51.93 -0.41 1.37 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -29.21 345.10 -7.40 -36.61 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.39 Total: 3.55 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.52 Total: -5.38 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.41 Total: -36.66 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.08 Total: -18.81 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.21 -7.40 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755698074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.981 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds