Wall clock time and date at job start Tue Mar 31 2020 06:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42907 * 112.84969 * 2 1 4 4 C 1.42897 * 113.99718 * 64.42627 * 3 2 1 5 5 C 1.50707 * 109.47245 * 179.52111 * 4 3 2 6 6 O 1.21297 * 119.99193 * 6.03496 * 5 4 3 7 7 N 1.34769 * 120.00152 * 186.03819 * 5 4 3 8 8 C 1.37102 * 120.00276 * 3.36183 * 7 5 4 9 9 H 1.07995 * 119.99800 * 126.93329 * 8 7 5 10 10 C 1.38952 * 119.99840 * 306.93002 * 8 7 5 11 11 N 1.31414 * 120.00159 * 334.85415 * 10 8 7 12 12 Si 1.86801 * 119.99935 * 154.85550 * 10 8 7 13 13 H 1.48501 * 109.46665 * 89.99922 * 12 10 8 14 14 H 1.48496 * 109.46979 * 210.00090 * 12 10 8 15 15 H 1.48498 * 109.47039 * 330.00094 * 12 10 8 16 16 C 1.46504 * 119.99986 * 183.36620 * 7 5 4 17 17 C 1.54959 * 110.92549 * 126.53674 * 16 7 5 18 18 C 1.54270 * 104.16102 * 156.29784 * 17 16 7 19 19 C 1.53874 * 106.63496 * 336.44652 * 18 17 16 20 20 C 1.54263 * 106.60265 * 359.97438 * 19 18 17 21 21 C 1.53783 * 113.61581 * 131.19497 * 2 1 3 22 22 C 1.53949 * 87.01806 * 89.23069 * 21 2 1 23 23 C 1.53775 * 87.11453 * 25.36454 * 22 21 2 24 24 H 1.09006 * 109.47080 * 54.89430 * 1 2 3 25 25 H 1.09000 * 109.47572 * 174.89363 * 1 2 3 26 26 H 1.08997 * 109.47473 * 294.89389 * 1 2 3 27 27 H 1.09004 * 109.47348 * 59.51958 * 4 3 2 28 28 H 1.09000 * 109.47673 * 299.52010 * 4 3 2 29 29 H 0.96997 * 120.00380 * 175.15978 * 11 10 8 30 30 H 1.09007 * 110.67057 * 3.22978 * 16 7 5 31 31 H 1.08995 * 110.47850 * 37.64022 * 17 16 7 32 32 H 1.09002 * 110.52900 * 274.97676 * 17 16 7 33 33 H 1.09001 * 110.03344 * 217.13558 * 18 17 16 34 34 H 1.08996 * 110.02836 * 95.75269 * 18 17 16 35 35 H 1.09002 * 110.03484 * 119.26613 * 19 18 17 36 36 H 1.09007 * 110.03001 * 240.64026 * 19 18 17 37 37 H 1.08994 * 110.48644 * 142.29218 * 20 19 18 38 38 H 1.09008 * 110.48389 * 264.79771 * 20 19 18 39 39 H 1.09003 * 113.61443 * 203.75331 * 21 2 1 40 40 H 1.09006 * 113.61361 * 334.65140 * 21 2 1 41 41 H 1.09001 * 113.53764 * 270.81314 * 22 21 2 42 42 H 1.08997 * 113.74352 * 139.94899 * 22 21 2 43 43 H 1.08995 * 113.61744 * 220.09255 * 23 22 21 44 44 H 1.09004 * 113.61777 * 89.18229 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 1.7912 2.0713 1.1776 5 6 2.4317 3.4316 1.0755 6 8 2.9828 3.7668 0.0482 7 7 2.3923 4.2756 2.1255 8 6 1.8304 3.8716 3.3090 9 1 2.3880 3.9607 4.2296 10 6 0.5436 3.3476 3.3240 11 7 -0.3083 3.6700 2.3767 12 14 0.0245 2.1849 4.6908 13 1 -0.5483 2.9675 5.8154 14 1 -0.9975 1.2393 4.1746 15 1 1.2066 1.4238 5.1688 16 6 2.9497 5.6248 2.0022 17 6 1.9076 6.6942 2.4165 18 6 2.7598 7.9146 2.8217 19 6 4.1473 7.3739 3.2092 20 6 4.0905 5.8431 3.0268 21 6 2.1460 -0.9280 1.0603 22 6 2.0950 -2.0419 -0.0012 23 6 2.1460 -0.9281 -1.0602 24 1 -0.3633 0.5910 -0.8408 25 1 -0.3634 -1.0236 -0.0915 26 1 -0.3634 0.4326 0.9321 27 1 2.1835 1.5496 2.0506 28 1 0.7117 2.1846 1.2768 29 1 -1.1825 3.2508 2.3473 30 1 3.3031 5.8038 0.9866 31 1 1.3170 6.3433 3.2627 32 1 1.2603 6.9432 1.5755 33 1 2.3053 8.4213 3.6731 34 1 2.8487 8.6033 1.9816 35 1 4.9096 7.7997 2.5567 36 1 4.3666 7.6189 4.2485 37 1 5.0353 5.4708 2.6309 38 1 3.8553 5.3547 3.9725 39 1 3.1585 -0.6476 1.3507 40 1 1.4939 -1.1079 1.9150 41 1 1.1594 -2.6013 -0.0006 42 1 2.9737 -2.6868 -0.0032 43 1 1.4939 -1.1079 -1.9149 44 1 3.1585 -0.6476 -1.3506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773060612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:34 Heat of formation + Delta-G solvation = -67.840199 kcal Electronic energy + Delta-G solvation = -23709.862808 eV Core-core repulsion = 20434.679737 eV Total energy + Delta-G solvation = -3275.183070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.54223 -38.71437 -36.70515 -34.89318 -34.21329 -31.51148 -28.80011 -27.95526 -27.85977 -26.19396 -25.36572 -24.65321 -22.88072 -19.87607 -19.66269 -19.48131 -18.34479 -16.82467 -16.35323 -15.63071 -15.30788 -15.09225 -14.74916 -14.44068 -14.26977 -14.03653 -13.34803 -12.98746 -12.77357 -12.57972 -12.36265 -12.05127 -11.91463 -11.77487 -11.51198 -11.32655 -11.13680 -11.01765 -10.99655 -10.67890 -10.64988 -10.55057 -10.42681 -10.38985 -10.28640 -9.82576 -9.80141 -9.64088 -8.99282 -8.62969 -8.18060 -7.31901 -6.46536 -4.27396 3.04156 3.15282 3.19135 3.94019 4.09196 4.15865 4.75467 4.79093 4.81592 4.96162 5.00544 5.23399 5.34996 5.40004 5.55129 5.66410 5.71211 5.91454 5.97338 6.01541 6.05738 6.11965 6.17912 6.19550 6.22363 6.26480 6.30005 6.34594 6.41988 6.49019 6.51526 6.53136 6.53850 6.66184 6.69853 6.83467 6.98351 7.08466 7.29109 7.38253 7.93345 8.02128 8.59226 8.86806 9.58660 10.01302 10.53595 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.006145 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.432595 B = 4555.630265 C = 5432.795301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.088 3.912 3 O -0.359 6.359 4 C 0.052 3.948 5 C 0.516 3.484 6 O -0.594 6.594 7 N -0.446 5.446 8 C -0.338 4.338 9 H 0.084 0.916 10 C 0.050 3.950 11 N -0.844 5.844 12 Si 0.890 3.110 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.136 3.864 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.166 4.166 22 C -0.139 4.139 23 C -0.120 4.120 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.270 0.730 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -4.648 0.827 4.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 O -0.277 6.277 4 C -0.026 4.026 5 C 0.305 3.695 6 O -0.478 6.478 7 N -0.167 5.167 8 C -0.466 4.466 9 H 0.101 0.899 10 C -0.157 4.157 11 N -0.479 5.479 12 Si 0.715 3.285 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.189 1.189 16 C 0.032 3.968 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.168 4.168 21 C -0.203 4.203 22 C -0.176 4.176 23 C -0.157 4.157 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.788 -4.367 0.138 4.721 hybrid contribution -0.756 -0.589 1.068 1.435 sum 1.031 -4.956 1.206 5.204 Atomic orbital electron populations 1.22010 0.94387 1.01850 1.03169 1.22855 0.92752 0.83056 0.96613 1.87965 1.74553 1.24490 1.40689 1.22480 1.02559 0.90947 0.86629 1.19957 0.79961 0.85915 0.83632 1.90516 1.48108 1.78138 1.31069 1.43167 1.53285 1.08835 1.11397 1.19170 0.96791 1.43307 0.87297 0.89854 1.25546 0.94745 0.97933 0.97465 1.70143 1.06116 1.36998 1.34693 0.86533 0.78971 0.81053 0.81963 1.19935 1.20398 1.18916 1.21907 0.92579 0.84208 0.98156 1.22490 0.97586 0.93573 1.01915 1.22089 0.95770 0.98113 1.00068 1.22036 0.97065 0.96277 1.00291 1.22598 0.98543 0.94835 1.00785 1.23621 1.02243 0.96970 0.97500 1.22711 1.01858 0.96061 0.96971 1.23007 1.02018 0.94207 0.96463 0.91483 0.91870 0.91826 0.91986 0.88301 0.91975 0.90042 0.89775 0.92708 0.92570 0.92771 0.92638 0.92553 0.92715 0.90848 0.89322 0.91439 0.90266 0.91190 0.91150 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.80 37.15 0.33 -2.21 16 2 C 0.09 1.55 1.35 -89.81 -0.12 1.43 16 3 O -0.36 -8.23 9.82 -55.07 -0.54 -8.77 16 4 C 0.05 1.25 4.19 36.01 0.15 1.40 16 5 C 0.52 13.82 7.33 -10.99 -0.08 13.74 16 6 O -0.59 -17.41 15.89 -14.30 -0.23 -17.64 16 7 N -0.45 -11.16 2.48 -105.58 -0.26 -11.42 16 8 C -0.34 -8.26 6.90 -14.93 -0.10 -8.36 16 9 H 0.08 1.99 6.95 -52.49 -0.37 1.62 16 10 C 0.05 1.21 3.45 -17.47 -0.06 1.15 16 11 N -0.84 -21.42 11.55 55.50 0.64 -20.78 16 12 Si 0.89 18.45 29.62 -169.99 -5.04 13.42 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 C 0.14 3.04 3.28 -65.90 -0.22 2.82 16 17 C -0.12 -2.41 6.36 -25.03 -0.16 -2.57 16 18 C -0.12 -2.01 6.80 -25.61 -0.17 -2.18 16 19 C -0.12 -1.87 6.80 -25.62 -0.17 -2.04 16 20 C -0.13 -2.44 6.39 -25.08 -0.16 -2.60 16 21 C -0.17 -2.56 6.68 -25.83 -0.17 -2.73 16 22 C -0.14 -1.73 7.74 -25.83 -0.20 -1.93 16 23 C -0.12 -1.74 7.50 -25.92 -0.19 -1.93 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.83 7.32 -51.93 -0.38 0.45 16 26 H 0.06 1.11 7.21 -51.93 -0.37 0.74 16 27 H 0.06 1.44 7.24 -51.93 -0.38 1.06 16 28 H 0.10 2.44 4.26 -51.93 -0.22 2.22 16 29 H 0.27 6.48 8.32 -40.82 -0.34 6.14 16 30 H 0.08 1.96 7.01 -51.92 -0.36 1.59 16 31 H 0.08 1.89 7.10 -51.93 -0.37 1.52 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.43 6.71 -51.92 -0.35 1.08 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.08 0.87 7.61 -51.93 -0.40 0.47 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.92 8.10 -51.93 -0.42 0.49 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -28.83 341.59 -9.01 -37.84 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.40 Total: 8.22 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.34 Total: -6.02 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.38 Total: -32.20 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.77 Total: -26.40 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.83 -9.01 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773060612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.999 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds