Wall clock time and date at job start Tue Mar 31 2020 08:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46788 * 2 1 4 4 C 1.52999 * 109.46817 * 240.00415 * 2 1 3 5 5 C 1.52996 * 109.47338 * 120.00280 * 2 1 3 6 6 N 1.46493 * 109.47424 * 47.13996 * 5 2 1 7 7 C 1.46504 * 119.99941 * 82.61870 * 6 5 2 8 8 C 1.50707 * 109.46992 * 260.95666 * 7 6 5 9 9 H 1.08003 * 119.99831 * 5.56488 * 8 7 6 10 10 C 1.37875 * 120.00034 * 185.55890 * 8 7 6 11 11 N 1.31512 * 119.99921 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99948 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47069 * 269.99933 * 12 10 8 14 14 H 1.48496 * 109.47014 * 30.00093 * 12 10 8 15 15 H 1.48502 * 109.46813 * 150.00013 * 12 10 8 16 16 C 1.34779 * 120.00210 * 262.61892 * 6 5 2 17 17 O 1.21275 * 119.99736 * 181.16387 * 16 6 5 18 18 C 1.50696 * 119.99753 * 1.16685 * 16 6 5 19 19 H 1.08997 * 109.70916 * 37.25635 * 18 16 6 20 20 C 1.53510 * 109.70422 * 276.63600 * 18 16 6 21 21 C 1.53246 * 108.16603 * 177.92914 * 20 18 16 22 22 C 1.50442 * 109.44457 * 46.80935 * 21 20 18 23 23 C 1.30680 * 122.49622 * 342.52161 * 22 21 20 24 24 O 1.35141 * 123.34729 * 0.44443 * 23 22 21 25 25 H 1.08998 * 109.47308 * 308.55130 * 1 2 3 26 26 H 1.08998 * 109.47786 * 68.55942 * 1 2 3 27 27 H 1.09005 * 109.46712 * 188.55739 * 1 2 3 28 28 H 1.09003 * 109.46589 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47031 * 300.00042 * 3 2 1 30 30 H 1.08994 * 109.46673 * 60.00341 * 3 2 1 31 31 H 1.08998 * 109.47229 * 314.96121 * 4 2 1 32 32 H 1.09004 * 109.47518 * 74.96716 * 4 2 1 33 33 H 1.09001 * 109.46953 * 194.96405 * 4 2 1 34 34 H 1.08998 * 109.46618 * 287.13609 * 5 2 1 35 35 H 1.09004 * 109.46976 * 167.14213 * 5 2 1 36 36 H 1.08996 * 109.47332 * 140.95769 * 7 6 5 37 37 H 1.08999 * 109.46852 * 20.95300 * 7 6 5 38 38 H 0.97004 * 119.99724 * 180.02562 * 11 10 8 39 39 H 1.08997 * 109.72294 * 297.57637 * 20 18 16 40 40 H 1.08999 * 109.72554 * 58.25010 * 20 18 16 41 41 H 1.09003 * 109.47839 * 286.81674 * 21 20 18 42 42 H 1.08995 * 109.47579 * 166.80677 * 21 20 18 43 43 H 1.08003 * 118.75266 * 162.48739 * 22 21 20 44 44 H 1.07998 * 118.32867 * 180.43436 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.3171 -1.9849 1.4129 7 6 1.7391 -3.1723 0.6658 8 6 0.8599 -3.3418 -0.5465 9 1 0.1257 -2.5883 -0.7906 10 6 0.9930 -4.4587 -1.3438 11 7 0.2261 -4.6064 -2.4020 12 14 2.2636 -5.7615 -0.9220 13 1 3.5480 -5.4356 -1.5921 14 1 2.4673 -5.7963 0.5485 15 1 1.7853 -7.0882 -1.3871 16 6 0.2638 -2.0550 2.2508 17 8 -0.3215 -3.1063 2.4023 18 6 -0.1866 -0.8271 2.9993 19 1 -0.0823 0.0509 2.3618 20 6 0.6632 -0.6522 4.2657 21 6 0.2116 0.6315 4.9706 22 6 -1.2907 0.6597 5.0457 23 6 -2.0455 -0.0980 4.2948 24 8 -1.5532 -0.9770 3.3940 25 1 -0.3634 0.6404 0.8037 26 1 -0.3634 0.3756 -0.9565 27 1 -0.3633 -1.0163 0.1529 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.4764 -1.6432 -1.3921 32 1 1.9097 -0.0773 -2.1192 33 1 3.0970 -0.9568 -1.1267 34 1 1.8756 -0.0925 2.1242 35 1 3.1058 -0.9236 1.1422 36 1 1.6527 -4.0523 1.3031 37 1 2.7753 -3.0532 0.3493 38 1 0.3195 -5.3924 -2.9627 39 1 0.5170 -1.5058 4.9276 40 1 1.7158 -0.5722 3.9943 41 1 0.5638 1.4973 4.4097 42 1 0.6265 0.6580 5.9781 43 1 -1.7632 1.3313 5.7472 44 1 -3.1174 -0.0178 4.3995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777858286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:26 Heat of formation + Delta-G solvation = -54.112811 kcal Electronic energy + Delta-G solvation = -24284.095016 eV Core-core repulsion = 21009.507209 eV Total energy + Delta-G solvation = -3274.587806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60300 -38.86207 -36.87649 -34.01753 -33.71415 -32.58267 -31.56588 -28.65498 -27.13625 -26.57758 -25.96050 -25.19212 -23.67218 -22.38952 -19.44384 -18.97735 -18.20604 -17.16105 -16.85689 -16.42361 -16.03561 -15.06451 -14.81816 -14.29530 -14.11690 -13.93235 -13.70685 -13.33545 -13.15768 -13.02749 -12.85920 -12.54089 -12.24584 -12.17225 -11.96190 -11.73833 -11.34142 -11.24132 -11.01156 -10.88450 -10.78733 -10.73749 -10.52369 -10.32985 -10.18285 -10.05172 -10.03432 -9.21407 -8.89026 -8.55105 -8.35878 -7.70955 -6.08423 -4.04100 2.30165 2.98157 3.27186 3.35371 3.39610 3.44416 4.06711 4.40085 4.63661 4.72920 4.92138 5.04498 5.14020 5.16748 5.19837 5.24463 5.34380 5.44402 5.56287 5.59174 5.66679 5.77080 5.81291 5.92962 5.97061 6.05878 6.17654 6.22003 6.24336 6.37405 6.52097 6.57784 6.61967 6.69250 6.74741 6.88917 6.95960 7.33279 7.56540 7.64928 7.66626 8.18825 8.45625 8.91045 8.96669 9.50894 11.03347 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.006509 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.661646 B = 4301.009352 C = 5013.970436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.174 4.174 5 C 0.115 3.885 6 N -0.587 5.587 7 C 0.217 3.783 8 C -0.521 4.521 9 H 0.089 0.911 10 C 0.074 3.926 11 N -0.892 5.892 12 Si 0.870 3.130 13 H -0.276 1.276 14 H -0.264 1.264 15 H -0.285 1.285 16 C 0.519 3.481 17 O -0.512 6.512 18 C 0.063 3.937 19 H 0.100 0.900 20 C -0.151 4.151 21 C -0.076 4.076 22 C -0.296 4.296 23 C 0.064 3.936 24 O -0.295 6.295 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.128 0.872 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 13.633 10.832 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.230 4.230 5 C -0.009 4.009 6 N -0.319 5.319 7 C 0.097 3.903 8 C -0.559 4.559 9 H 0.107 0.893 10 C -0.129 4.129 11 N -0.530 5.530 12 Si 0.697 3.303 13 H -0.202 1.202 14 H -0.189 1.189 15 H -0.211 1.211 16 C 0.304 3.696 17 O -0.387 6.387 18 C 0.004 3.996 19 H 0.117 0.883 20 C -0.189 4.189 21 C -0.113 4.113 22 C -0.316 4.316 23 C 0.000 4.000 24 O -0.207 6.207 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.903 12.733 10.655 16.855 hybrid contribution 0.776 -0.305 0.141 0.846 sum 3.679 12.429 10.796 16.869 Atomic orbital electron populations 1.22107 0.94712 1.03233 1.00481 1.20873 0.96146 0.94289 0.96799 1.21887 1.00639 0.95916 1.01188 1.22575 1.01586 1.04577 0.94312 1.21771 0.96644 0.85316 0.97159 1.47809 1.30185 1.11763 1.42188 1.19738 0.95394 0.83147 0.92049 1.21292 1.20379 1.07084 1.07162 0.89340 1.24842 0.95720 0.97403 0.94898 1.69885 1.38746 1.28895 1.15511 0.86935 0.81912 0.81983 0.79468 1.20193 1.18873 1.21060 1.19614 0.81040 0.88778 0.80169 1.90711 1.53544 1.30563 1.63836 1.22729 0.81664 0.98994 0.96234 0.88278 1.22228 1.00243 0.99721 0.96728 1.20303 0.93248 0.96863 1.00875 1.22436 0.95954 1.07458 1.05765 1.22133 0.98295 0.90031 0.89495 1.86039 1.26324 1.51408 1.56963 0.94146 0.92890 0.90280 0.92924 0.92677 0.93435 0.85373 0.94573 0.94108 0.91498 0.90708 0.94552 0.95249 0.92560 0.90069 0.89689 0.91196 0.90555 0.86289 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.02 37.16 0.26 -2.27 16 2 C -0.08 -1.23 0.86 -154.51 -0.13 -1.37 16 3 C -0.14 -1.67 8.37 37.16 0.31 -1.36 16 4 C -0.17 -3.14 7.92 37.16 0.29 -2.85 16 5 C 0.12 1.75 4.44 -4.05 -0.02 1.74 16 6 N -0.59 -11.58 1.76 -175.06 -0.31 -11.89 16 7 C 0.22 5.04 3.58 -5.19 -0.02 5.02 16 8 C -0.52 -13.97 6.97 -34.44 -0.24 -14.21 16 9 H 0.09 2.57 5.29 -52.48 -0.28 2.29 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 12 Si 0.87 21.08 27.58 -169.99 -4.69 16.39 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.26 -6.29 6.38 56.52 0.36 -5.93 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.52 10.84 5.29 -10.99 -0.06 10.78 16 17 O -0.51 -13.27 16.37 -13.12 -0.21 -13.48 16 18 C 0.06 1.04 2.14 -27.62 -0.06 0.98 16 19 H 0.10 1.48 4.10 -51.93 -0.21 1.27 16 20 C -0.15 -1.98 5.24 -26.34 -0.14 -2.12 16 21 C -0.08 -0.81 6.23 -27.88 -0.17 -0.98 16 22 C -0.30 -3.35 9.97 -36.06 -0.36 -3.71 16 23 C 0.06 0.84 10.88 29.10 0.32 1.16 16 24 O -0.30 -5.19 9.69 -35.81 -0.35 -5.54 16 25 H 0.04 0.60 6.14 -51.93 -0.32 0.28 16 26 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 27 H 0.08 1.67 4.21 -51.93 -0.22 1.45 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 2.89 3.49 -51.93 -0.18 2.71 16 32 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 34 H 0.07 0.84 4.77 -51.93 -0.25 0.59 16 35 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 36 H 0.04 0.93 6.36 -51.93 -0.33 0.60 16 37 H 0.03 0.64 7.59 -51.93 -0.39 0.24 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 0.97 6.86 -51.93 -0.36 0.62 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.14 328.22 -6.70 -38.84 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.75 Total: 3.77 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.11 Total: -7.21 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.47 Total: -37.72 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.56 Total: -19.02 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.69 Total: 16.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.14 -6.70 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777858286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.275 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds