Wall clock time and date at job start Tue Mar 31 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00134 * 2 1 4 4 H 1.48507 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47290 * 299.99895 * 3 2 1 6 6 H 1.48498 * 109.47026 * 60.00055 * 3 2 1 7 7 C 1.37883 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00472 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47066 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47629 * 179.97438 * 10 9 7 12 12 C 1.34224 * 117.00574 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00215 * 179.97438 * 12 11 10 15 15 H 1.08994 * 109.90527 * 300.35462 * 14 12 11 16 16 C 1.54000 * 109.91193 * 61.45663 * 14 12 11 17 17 C 1.54601 * 105.13484 * 120.58034 * 16 14 12 18 18 C 1.54933 * 102.92263 * 21.95464 * 17 16 14 19 19 N 1.47901 * 109.91631 * 179.04533 * 14 12 11 20 20 C 1.46897 * 110.99758 * 94.80805 * 19 14 12 21 21 C 1.54269 * 110.03082 * 292.90539 * 20 19 14 22 22 C 1.54974 * 104.15781 * 217.13679 * 21 20 19 23 23 C 1.54888 * 102.77506 * 37.88859 * 22 21 20 24 24 C 1.53873 * 110.03144 * 175.68910 * 20 19 14 25 25 H 0.97003 * 119.99864 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47414 * 59.99888 * 9 7 2 27 27 H 1.09010 * 109.47223 * 299.99829 * 9 7 2 28 28 H 1.08999 * 109.47432 * 60.00096 * 10 9 7 29 29 H 1.09002 * 109.47506 * 299.99828 * 10 9 7 30 30 H 1.09001 * 110.30649 * 239.49266 * 16 14 12 31 31 H 1.08996 * 110.30794 * 1.66316 * 16 14 12 32 32 H 1.08998 * 110.72336 * 140.31424 * 17 16 14 33 33 H 1.09007 * 110.72022 * 263.59456 * 17 16 14 34 34 H 1.09002 * 110.66679 * 81.02308 * 18 17 16 35 35 H 1.09005 * 110.66553 * 204.15187 * 18 17 16 36 36 H 1.09003 * 110.02005 * 54.29454 * 20 19 14 37 37 H 1.08993 * 110.48724 * 335.78040 * 21 20 19 38 38 H 1.08998 * 110.48790 * 98.42815 * 21 20 19 39 39 H 1.08999 * 110.71671 * 279.57156 * 22 21 20 40 40 H 1.08996 * 110.75899 * 156.22536 * 22 21 20 41 41 H 1.08999 * 110.48401 * 203.40323 * 23 22 21 42 42 H 1.09001 * 110.48295 * 80.76150 * 23 22 21 43 43 H 1.09003 * 110.03294 * 238.56803 * 24 20 19 44 44 H 1.09001 * 110.03524 * 359.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 8 1.5191 -4.9196 -0.0020 12 6 2.2501 -6.0453 -0.0024 13 8 3.4567 -5.9822 -0.0018 14 6 1.5659 -7.3881 -0.0023 15 1 0.9363 -7.4837 0.8822 16 6 0.7109 -7.5412 -1.2740 17 6 1.2783 -8.7858 -1.9945 18 6 1.9883 -9.5541 -0.8517 19 7 2.5760 -8.4682 -0.0260 20 6 2.8722 -8.9417 1.3327 21 6 3.5831 -7.8326 2.1355 22 6 4.6177 -8.5953 3.0013 23 6 5.1099 -9.7096 2.0448 24 6 3.8422 -10.1348 1.2753 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6239 -2.5575 0.8881 28 1 2.8711 -3.6048 0.8890 29 1 2.8725 -3.6040 -0.8909 30 1 -0.3345 -7.7006 -1.0100 31 1 0.8120 -6.6591 -1.9062 32 1 0.4737 -9.3851 -2.4205 33 1 1.9923 -8.4935 -2.7646 34 1 1.2688 -10.1320 -0.2717 35 1 2.7704 -10.2003 -1.2505 36 1 1.9502 -9.2339 1.8354 37 1 4.0867 -7.1381 1.4631 38 1 2.8708 -7.3035 2.7685 39 1 4.1411 -9.0250 3.8824 40 1 5.4406 -7.9399 3.2868 41 1 5.5114 -10.5493 2.6120 42 1 5.8601 -9.3186 1.3576 43 1 3.3914 -11.0058 1.7508 44 1 4.0928 -10.3628 0.2393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786879259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:44 Heat of formation + Delta-G solvation = -97.283161 kcal Electronic energy + Delta-G solvation = -22778.682206 eV Core-core repulsion = 19502.222393 eV Total energy + Delta-G solvation = -3276.459813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55279 -38.91092 -36.88833 -35.85260 -33.32582 -31.61854 -30.60321 -29.73898 -28.40483 -26.81171 -25.11441 -23.06916 -21.66265 -21.00843 -20.57255 -19.92065 -19.56091 -17.34071 -16.90446 -16.48669 -15.98049 -15.55855 -15.42385 -14.76716 -14.54607 -14.35827 -13.71377 -13.44129 -13.14927 -13.04157 -12.91212 -12.49459 -12.34874 -11.71746 -11.56144 -11.29631 -11.10335 -11.07945 -11.04331 -11.02563 -11.00078 -10.95337 -10.81469 -10.69347 -10.62591 -10.46710 -9.90378 -9.57300 -9.51186 -9.25734 -8.56008 -8.43588 -6.09508 -4.13510 2.69548 3.01168 3.28212 3.35634 3.40836 3.93624 4.33920 4.41047 4.41534 4.56742 4.71159 4.81804 4.88578 5.05767 5.23094 5.25834 5.27206 5.34829 5.39631 5.43846 5.52421 5.57651 5.64493 5.70512 5.70863 5.79760 5.84416 5.92859 5.99643 6.01611 6.10983 6.12610 6.14106 6.18622 6.48824 6.65392 6.69978 6.97430 7.14961 7.59381 7.64421 7.89287 8.23890 8.40903 8.92406 9.50877 11.02059 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.003648 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.300220 B = 7674.026358 C = 8537.409979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.361 6.361 12 C 0.460 3.540 13 O -0.492 6.492 14 C 0.075 3.925 15 H 0.086 0.914 16 C -0.120 4.120 17 C -0.124 4.124 18 C 0.037 3.963 19 N -0.491 5.491 20 C 0.075 3.925 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -22.403 1.164 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.277 6.277 12 C 0.301 3.699 13 O -0.379 6.379 14 C -0.035 4.035 15 H 0.103 0.897 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.090 4.090 19 N -0.217 5.217 20 C -0.034 4.034 21 C -0.176 4.176 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.878 -22.029 0.955 22.388 hybrid contribution -0.285 0.758 0.489 0.945 sum 3.594 -21.271 1.443 21.621 Atomic orbital electron populations 1.69984 1.06090 1.26833 1.49977 1.24983 0.94909 0.99378 0.94902 0.86428 0.80096 0.83187 0.77689 1.19572 1.20835 1.20839 1.21031 0.93221 0.90141 1.51922 0.92219 1.19164 0.94198 0.89101 0.98782 1.23589 0.96290 0.78845 1.00804 1.86504 1.42516 1.15692 1.82990 1.23161 0.86669 0.86626 0.73397 1.90526 1.15503 1.87731 1.44170 1.21884 0.92206 0.88684 1.00760 0.89658 1.22371 0.98849 0.99821 0.94789 1.22529 0.99965 0.95927 0.97785 1.23241 0.97675 0.93715 0.94361 1.64444 1.38448 1.06505 1.12284 1.22528 0.97394 0.95459 0.88004 1.22854 0.98303 0.98115 0.98353 1.22440 0.98666 0.97283 0.97522 1.22288 0.97348 0.98048 0.98001 1.22195 0.95592 0.96256 1.01316 0.92797 0.95402 0.95448 0.92502 0.92427 0.89986 0.89762 0.90516 0.90398 0.93480 0.89508 0.93928 0.87237 0.92556 0.92055 0.91486 0.92064 0.91303 0.92054 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.76 5.40 37.15 0.20 1.96 16 11 O -0.36 -7.34 10.16 -39.24 -0.40 -7.74 16 12 C 0.46 8.29 6.45 36.01 0.23 8.53 16 13 O -0.49 -9.91 13.40 -18.75 -0.25 -10.17 16 14 C 0.07 1.02 2.73 -67.79 -0.18 0.83 16 15 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 16 C -0.12 -1.38 6.53 -25.37 -0.17 -1.55 16 17 C -0.12 -1.16 7.06 -24.87 -0.18 -1.34 16 18 C 0.04 0.35 5.68 -1.90 -0.01 0.34 16 19 N -0.49 -6.18 4.26 -214.70 -0.92 -7.10 16 20 C 0.07 0.86 2.38 -66.60 -0.16 0.70 16 21 C -0.14 -1.83 5.38 -25.02 -0.13 -1.97 16 22 C -0.12 -1.31 6.91 -24.69 -0.17 -1.48 16 23 C -0.12 -1.16 6.83 -25.07 -0.17 -1.34 16 24 C -0.12 -1.12 6.05 -25.61 -0.16 -1.27 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 28 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.10 7.66 -51.93 -0.40 0.71 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.05 0.39 8.02 -51.93 -0.42 -0.02 16 35 H 0.09 0.75 7.15 -51.93 -0.37 0.38 16 36 H 0.04 0.46 7.96 -51.93 -0.41 0.05 16 37 H 0.11 1.81 5.10 -51.93 -0.26 1.54 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.72 6.53 -51.93 -0.34 0.38 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -31.02 345.25 -9.74 -40.76 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.64 Total: -2.04 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.45 Total: -9.67 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: -0.18 Total: -32.85 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.65 Total: -17.91 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.02 -9.74 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786879259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.522 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds