Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48502 * 109.47212 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47194 * 119.99632 * 3 2 1 6 6 H 1.48502 * 109.47136 * 239.99772 * 3 2 1 7 7 C 1.37878 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00522 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47186 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47431 * 180.02562 * 10 9 7 12 12 C 1.34232 * 117.00276 * 179.97438 * 11 10 9 13 13 O 1.20820 * 119.99907 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00051 * 179.97438 * 12 11 10 15 15 H 1.09002 * 110.36473 * 60.90214 * 14 12 11 16 16 C 1.54379 * 110.41165 * 298.54787 * 14 12 11 17 17 C 1.54257 * 105.05936 * 217.36848 * 16 14 12 18 18 C 1.54383 * 105.06034 * 0.02562 * 17 16 14 19 19 N 1.48550 * 104.59602 * 23.85329 * 18 17 16 20 20 C 1.46899 * 111.00528 * 200.96049 * 19 18 17 21 21 C 1.54265 * 110.03189 * 58.29373 * 20 19 18 22 22 C 1.54963 * 104.16097 * 217.14283 * 21 20 19 23 23 C 1.54883 * 102.77976 * 37.88671 * 22 21 20 24 24 C 1.53876 * 110.02904 * 301.08103 * 20 19 18 25 25 H 0.96998 * 120.00509 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47549 * 299.99901 * 9 7 2 27 27 H 1.08997 * 109.47055 * 59.99919 * 9 7 2 28 28 H 1.09007 * 109.47293 * 300.00285 * 10 9 7 29 29 H 1.09006 * 109.47355 * 59.99623 * 10 9 7 30 30 H 1.09003 * 110.32394 * 336.26591 * 16 14 12 31 31 H 1.09004 * 110.32283 * 98.37151 * 16 14 12 32 32 H 1.08996 * 110.32594 * 118.90077 * 17 16 14 33 33 H 1.09006 * 110.32677 * 241.10443 * 17 16 14 34 34 H 1.09005 * 110.40873 * 142.63157 * 18 17 16 35 35 H 1.08999 * 110.41041 * 264.95232 * 18 17 16 36 36 H 1.08992 * 110.02156 * 179.68913 * 20 19 18 37 37 H 1.09009 * 110.48643 * 335.78940 * 21 20 19 38 38 H 1.08996 * 110.48468 * 98.42860 * 21 20 19 39 39 H 1.09000 * 110.71764 * 279.56940 * 22 21 20 40 40 H 1.09004 * 110.92151 * 156.29619 * 22 21 20 41 41 H 1.09002 * 110.48949 * 203.40382 * 23 22 21 42 42 H 1.09010 * 110.59758 * 80.81815 * 23 22 21 43 43 H 1.09000 * 110.03590 * 238.56171 * 24 20 19 44 44 H 1.09002 * 110.03418 * 359.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2502 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0002 14 6 1.5660 -7.3880 -0.0008 15 1 0.9506 -7.5001 -0.8935 16 6 0.7060 -7.5542 1.2705 17 6 0.8624 -9.0361 1.6694 18 6 1.8043 -9.6405 0.6059 19 7 2.5698 -8.4805 0.0812 20 6 3.1339 -8.7771 -1.2423 21 6 2.0052 -9.1459 -2.2272 22 6 2.6204 -10.2628 -3.1078 23 6 3.4651 -11.0728 -2.0932 24 6 4.0620 -10.0015 -1.1573 25 1 -0.4851 -0.8400 -0.0004 26 1 0.6240 -2.5567 0.8902 27 1 0.6247 -2.5570 -0.8896 28 1 2.8719 -3.6044 -0.8895 29 1 2.8719 -3.6044 0.8905 30 1 1.0765 -6.9070 2.0655 31 1 -0.3378 -7.3270 1.0538 32 1 1.3096 -9.1163 2.6601 33 1 -0.1049 -9.5381 1.6481 34 1 2.4781 -10.3653 1.0628 35 1 1.2269 -10.1091 -0.1910 36 1 3.6868 -7.9146 -1.6141 37 1 1.1356 -9.5212 -1.6877 38 1 1.7343 -8.2840 -2.8369 39 1 3.2546 -9.8359 -3.8848 40 1 1.8412 -10.8861 -3.5465 41 1 4.2586 -11.6167 -2.6057 42 1 2.8334 -11.7610 -1.5314 43 1 5.0652 -9.7334 -1.4888 44 1 4.0942 -10.3754 -0.1339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786879264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = -99.561826 kcal Electronic energy + Delta-G solvation = -22695.299900 eV Core-core repulsion = 19418.741277 eV Total energy + Delta-G solvation = -3276.558623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75937 -39.28711 -36.77458 -35.94954 -33.67627 -31.65268 -30.49615 -29.51966 -28.81569 -26.89745 -24.75741 -23.24473 -21.84472 -21.31897 -21.00957 -20.13420 -19.15508 -17.44135 -16.96465 -16.52360 -16.27043 -15.90040 -15.65312 -14.78598 -14.57277 -13.92626 -13.75465 -13.68177 -13.41842 -13.33374 -12.97014 -12.34073 -12.03933 -11.86151 -11.83349 -11.60275 -11.57191 -11.40113 -11.28072 -11.25624 -11.10889 -10.97251 -10.70978 -10.64277 -10.60825 -10.19732 -10.08792 -9.82132 -9.72356 -8.74059 -8.56973 -8.40198 -6.45514 -4.16172 2.59348 2.94204 3.42477 3.44211 3.62999 3.86300 4.28491 4.34777 4.41880 4.49363 4.62566 4.65295 4.78437 4.95742 5.14518 5.16630 5.20083 5.23941 5.30240 5.33259 5.38115 5.39186 5.49777 5.57644 5.63881 5.64846 5.68740 5.79971 5.87718 5.90231 5.99257 6.00036 6.02212 6.06723 6.11860 6.50671 6.61801 6.84622 6.92628 7.32689 7.34721 8.03195 8.27274 8.35512 8.77202 9.56338 10.95973 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.003301 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.274446 B = 8480.818579 C = 8907.645075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 1.073 2.927 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.607 4.607 8 H 0.053 0.947 9 C 0.013 3.987 10 C 0.084 3.916 11 O -0.362 6.362 12 C 0.463 3.537 13 O -0.497 6.497 14 C 0.067 3.933 15 H 0.090 0.910 16 C -0.112 4.112 17 C -0.124 4.124 18 C 0.027 3.973 19 N -0.481 5.481 20 C 0.069 3.931 21 C -0.167 4.167 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.116 4.116 25 H 0.270 0.730 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -24.075 -1.874 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.645 4.645 8 H 0.071 0.929 9 C -0.024 4.024 10 C 0.011 3.989 11 O -0.278 6.278 12 C 0.304 3.696 13 O -0.384 6.384 14 C -0.043 4.043 15 H 0.108 0.892 16 C -0.150 4.150 17 C -0.162 4.162 18 C -0.100 4.100 19 N -0.205 5.205 20 C -0.040 4.040 21 C -0.205 4.205 22 C -0.158 4.158 23 C -0.163 4.163 24 C -0.154 4.154 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.662 -22.198 -1.517 22.409 hybrid contribution -0.239 -1.771 -0.632 1.896 sum 2.423 -23.970 -2.149 24.187 Atomic orbital electron populations 1.70772 1.06867 1.30809 1.45836 1.25900 0.96488 1.02721 0.93396 0.83487 0.74845 0.74935 0.76692 1.20607 1.21260 1.21286 1.21838 0.94489 0.91165 1.57053 0.92891 1.19283 0.94846 0.90809 0.97510 1.23422 0.95931 0.78465 1.01087 1.86492 1.42571 1.15722 1.83031 1.23118 0.86582 0.86589 0.73328 1.90617 1.15509 1.87912 1.44407 1.22221 0.92858 0.88218 1.00985 0.89215 1.22235 0.99700 0.97271 0.95786 1.22320 0.99382 0.94934 0.99541 1.23219 0.95807 0.93785 0.97215 1.65297 1.28111 1.03746 1.23390 1.22608 0.95101 0.99138 0.87168 1.23171 0.99335 0.99322 0.98711 1.22418 0.99053 0.96743 0.97564 1.22394 0.99215 0.97544 0.97142 1.22176 0.98685 0.94083 1.00438 0.91912 0.96256 0.96331 0.92314 0.92186 0.90262 0.89773 0.90626 0.90861 0.89617 0.92645 0.88903 0.90744 0.91397 0.91330 0.91655 0.91622 0.91784 0.91264 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 3 Si 1.07 25.30 29.90 -169.99 -5.08 20.21 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.61 -17.57 9.11 -34.44 -0.31 -17.88 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.01 0.33 4.66 -27.88 -0.13 0.20 16 10 C 0.08 1.93 5.40 37.16 0.20 2.13 16 11 O -0.36 -7.43 10.20 -39.26 -0.40 -7.83 16 12 C 0.46 8.49 7.08 36.01 0.25 8.75 16 13 O -0.50 -10.41 15.44 -18.75 -0.29 -10.70 16 14 C 0.07 0.91 2.60 -67.20 -0.17 0.73 16 15 H 0.09 1.11 6.41 -51.93 -0.33 0.78 16 16 C -0.11 -1.29 6.52 -25.35 -0.17 -1.45 16 17 C -0.12 -1.10 7.00 -25.35 -0.18 -1.28 16 18 C 0.03 0.25 5.41 -2.19 -0.01 0.24 16 19 N -0.48 -6.01 4.69 -214.25 -1.01 -7.01 16 20 C 0.07 0.79 2.93 -66.60 -0.20 0.60 16 21 C -0.17 -1.60 4.64 -25.03 -0.12 -1.72 16 22 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 23 C -0.13 -0.95 6.83 -25.07 -0.17 -1.12 16 24 C -0.12 -1.10 6.06 -25.61 -0.16 -1.26 16 25 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 26 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 27 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 28 H 0.06 1.36 8.13 -51.92 -0.42 0.94 16 29 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 30 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.73 7.18 -51.93 -0.37 0.35 16 35 H 0.06 0.46 5.57 -51.93 -0.29 0.17 16 36 H 0.09 1.32 7.43 -51.93 -0.39 0.94 16 37 H 0.07 0.67 5.36 -51.92 -0.28 0.39 16 38 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -32.25 342.60 -9.66 -41.91 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.38 Total: -1.97 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.42 Total: -12.73 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.25 Total: -34.06 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.69 Total: -18.53 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.25 -9.66 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786879264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.650 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds