Wall clock time and date at job start Tue Mar 31 2020 07:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47187 * 2 1 4 4 C 1.33450 * 118.45698 * 91.36506 * 3 2 1 5 5 C 1.41796 * 118.79150 * 0.39371 * 4 3 2 6 6 O 1.21738 * 120.00017 * 263.21780 * 5 4 3 7 7 N 1.34775 * 120.00190 * 83.21592 * 5 4 3 8 8 C 1.46496 * 119.99733 * 354.73616 * 7 5 4 9 9 C 1.50700 * 109.47033 * 90.00447 * 8 7 5 10 10 H 1.08005 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00162 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00096 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00090 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46909 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47073 * 119.99731 * 13 11 9 16 16 H 1.48497 * 109.47226 * 240.00204 * 13 11 9 17 17 C 1.46501 * 120.00103 * 174.46442 * 7 5 4 18 18 C 1.53002 * 109.47005 * 303.95220 * 17 7 5 19 19 C 1.52998 * 109.46997 * 63.94963 * 17 7 5 20 20 C 1.50418 * 122.42656 * 180.11410 * 4 3 2 21 21 C 1.53210 * 109.56092 * 342.60878 * 20 4 3 22 22 C 1.53482 * 108.25979 * 47.35550 * 21 20 4 23 23 O 1.34348 * 118.45627 * 271.63265 * 3 2 1 24 24 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46773 * 299.99948 * 1 2 3 26 26 H 1.09001 * 109.47034 * 59.99359 * 1 2 3 27 27 H 1.09003 * 109.46773 * 240.00051 * 2 1 3 28 28 H 1.08997 * 109.46902 * 119.99899 * 2 1 3 29 29 H 1.09006 * 109.47359 * 209.99911 * 8 7 5 30 30 H 1.09000 * 109.47761 * 329.99968 * 8 7 5 31 31 H 0.96997 * 119.99997 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47121 * 183.95188 * 17 7 5 33 33 H 1.08991 * 109.47267 * 65.93102 * 18 17 7 34 34 H 1.09001 * 109.46579 * 185.93173 * 18 17 7 35 35 H 1.09000 * 109.46842 * 305.92956 * 18 17 7 36 36 H 1.09004 * 109.47375 * 64.64680 * 19 17 7 37 37 H 1.09001 * 109.47006 * 184.63893 * 19 17 7 38 38 H 1.08992 * 109.47532 * 304.64193 * 19 17 7 39 39 H 1.09000 * 109.45621 * 102.63259 * 20 4 3 40 40 H 1.09004 * 109.45891 * 222.60096 * 20 4 3 41 41 H 1.08997 * 109.70627 * 167.04440 * 21 20 4 42 42 H 1.09002 * 109.70899 * 287.62001 * 21 20 4 43 43 H 1.08996 * 109.70800 * 56.99197 * 22 21 20 44 44 H 1.09001 * 109.70610 * 177.56441 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2707 2.0111 1.1729 5 6 2.0498 1.2755 2.3649 6 8 1.0023 1.4010 2.9723 7 7 2.9996 0.4375 2.8254 8 6 4.2106 0.1984 2.0365 9 6 5.2667 1.2024 2.4206 10 1 5.0567 1.9447 3.1766 11 6 6.5011 1.1735 1.8071 12 7 6.7571 0.2694 0.8869 13 14 7.8100 2.4185 2.2828 14 1 7.2756 3.3214 3.3337 15 1 9.0050 1.7063 2.8022 16 1 8.1896 3.2178 1.0903 17 6 2.8237 -0.2298 4.1177 18 6 2.5938 0.8201 5.2067 19 6 1.6151 -1.1654 4.0482 20 6 2.7709 3.4258 1.2771 21 6 3.3479 3.8665 -0.0720 22 6 2.3478 3.4830 -1.1712 23 8 2.2141 2.0356 -1.1807 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.5787 -0.8088 2.2319 30 1 3.9798 0.3015 0.9762 31 1 7.6256 0.2488 0.4556 32 1 3.7174 -0.8076 4.3530 33 1 1.6454 1.3268 5.0286 34 1 2.5681 0.3329 6.1814 35 1 3.4044 1.5486 5.1859 36 1 1.8130 -1.9619 3.3309 37 1 1.4343 -1.5991 5.0318 38 1 0.7371 -0.6020 3.7326 39 1 1.9459 4.0833 1.5512 40 1 3.5480 3.4810 2.0395 41 1 3.4983 4.9461 -0.0724 42 1 4.2986 3.3630 -0.2473 43 1 1.3803 3.9401 -0.9637 44 1 2.7157 3.8250 -2.1386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790555158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:46 Heat of formation + Delta-G solvation = -72.733083 kcal Electronic energy + Delta-G solvation = -24519.392329 eV Core-core repulsion = 21243.997087 eV Total energy + Delta-G solvation = -3275.395242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37533 -38.68505 -35.26849 -34.07725 -33.71330 -32.81703 -31.29249 -29.54138 -26.91539 -26.59779 -25.36561 -24.44545 -22.77492 -21.93013 -21.32627 -19.37586 -17.71577 -16.56161 -16.29913 -15.87342 -15.41484 -15.11030 -14.52430 -14.25125 -14.11242 -13.46146 -13.37471 -13.25263 -12.94315 -12.85147 -12.56661 -12.47480 -12.22949 -11.72684 -11.64293 -11.54900 -11.45022 -11.31158 -10.95174 -10.89922 -10.81214 -10.74714 -10.57060 -10.41685 -10.34582 -10.05352 -9.93146 -9.60393 -8.74286 -8.50786 -7.66118 -7.51135 -6.11436 -4.16670 2.47989 3.21805 3.30724 3.33442 3.42302 3.62242 4.21848 4.39069 5.04861 5.12626 5.21504 5.24201 5.45888 5.46408 5.49547 5.60504 5.65750 5.75477 5.78768 5.82619 5.92745 6.04544 6.06957 6.12704 6.16739 6.25803 6.29775 6.36473 6.41648 6.47802 6.50824 6.60297 6.76917 6.81911 6.83892 6.92172 6.95321 7.29641 7.70960 7.83487 7.88441 8.15983 8.47230 8.88120 9.15273 9.49381 10.95467 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.009267 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.292909 B = 3020.853864 C = 4207.158356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C 0.120 3.880 4 C -0.252 4.252 5 C 0.582 3.418 6 O -0.572 6.572 7 N -0.589 5.589 8 C 0.236 3.764 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.147 3.853 18 C -0.163 4.163 19 C -0.166 4.166 20 C -0.052 4.052 21 C -0.156 4.156 22 C 0.062 3.938 23 O -0.314 6.314 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 2.086 -1.484 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C 0.073 3.927 4 C -0.256 4.256 5 C 0.372 3.628 6 O -0.454 6.454 7 N -0.320 5.320 8 C 0.116 3.884 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.043 3.957 18 C -0.221 4.221 19 C -0.224 4.224 20 C -0.090 4.090 21 C -0.193 4.193 22 C -0.012 4.012 23 O -0.227 6.227 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.597 1.974 -1.488 8.945 hybrid contribution 1.275 0.865 0.336 1.577 sum -7.322 2.839 -1.152 7.938 Atomic orbital electron populations 1.21741 0.94195 1.01767 1.02530 1.20700 0.96386 0.90842 1.04259 1.20580 0.94852 0.93370 0.83939 1.19626 1.13260 0.99449 0.93276 1.16599 0.82980 0.78569 0.84651 1.90647 1.26809 1.67364 1.60598 1.48465 1.20708 1.43138 1.19697 1.19461 0.80370 0.96885 0.91648 1.21465 0.97294 1.15504 1.21964 0.92298 1.24897 0.98198 0.95753 0.94929 1.69930 1.22969 1.34251 1.25812 0.86584 0.81821 0.81493 0.78453 1.19742 1.20968 1.20940 1.20815 0.97850 0.93220 0.83850 1.22141 1.03286 0.99594 0.97086 1.22208 1.00100 0.99184 1.00923 1.20021 0.99867 0.91255 0.97840 1.22161 1.00212 1.01681 0.95255 1.23350 0.99177 0.78333 1.00338 1.86088 1.86550 1.21651 1.28430 0.92350 0.91611 0.92739 0.90211 0.89040 0.95144 0.93872 0.92782 0.90018 0.90896 0.93104 0.92631 0.93316 0.92809 0.90651 0.92012 0.89576 0.90527 0.89439 0.91943 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.89 37.16 0.37 -1.80 16 2 C -0.08 -1.46 5.23 -27.88 -0.15 -1.61 16 3 C 0.12 2.28 4.90 -35.98 -0.18 2.10 16 4 C -0.25 -5.05 4.10 -105.07 -0.43 -5.49 16 5 C 0.58 12.28 4.40 -14.90 -0.07 12.22 16 6 O -0.57 -12.63 13.04 5.15 0.07 -12.56 16 7 N -0.59 -12.47 1.94 -170.80 -0.33 -12.80 16 8 C 0.24 5.66 4.36 -5.20 -0.02 5.64 16 9 C -0.52 -13.53 9.27 -34.44 -0.32 -13.85 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 13 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.15 2.76 3.27 -67.93 -0.22 2.54 16 18 C -0.16 -2.92 8.95 37.16 0.33 -2.59 16 19 C -0.17 -2.75 9.23 37.16 0.34 -2.41 16 20 C -0.05 -0.96 5.89 -27.91 -0.16 -1.12 16 21 C -0.16 -2.47 6.23 -26.37 -0.16 -2.63 16 22 C 0.06 0.90 7.15 37.41 0.27 1.16 16 23 O -0.31 -5.61 10.40 -14.88 -0.15 -5.76 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.09 7.82 -51.93 -0.41 0.68 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.72 5.59 -51.93 -0.29 1.43 16 29 H 0.03 0.77 7.96 -51.93 -0.41 0.36 16 30 H 0.04 1.09 5.50 -51.93 -0.29 0.81 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.08 1.54 7.83 -51.93 -0.41 1.13 16 33 H 0.07 1.40 6.27 -51.93 -0.33 1.07 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.37 6.17 -51.93 -0.32 1.05 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.74 8.05 -51.93 -0.42 1.32 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -28.90 346.89 -7.46 -36.35 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.48 Total: 4.14 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.50 Total: -6.22 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.40 Total: -36.73 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.09 Total: -18.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.90 -7.46 -36.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790555158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.380 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds