Wall clock time and date at job start Tue Mar 31 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48500 * 109.47579 * 240.00156 * 3 2 1 5 5 H 1.48505 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47131 * 120.00139 * 3 2 1 7 7 C 1.37869 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99853 * 175.14652 * 7 2 1 9 9 C 1.50701 * 119.99951 * 355.41515 * 7 2 1 10 10 C 1.53000 * 115.55210 * 274.92830 * 9 7 2 11 11 N 1.46893 * 109.47258 * 294.80560 * 10 9 7 12 12 C 1.46906 * 111.00098 * 185.39709 * 11 10 9 13 13 C 1.52991 * 109.46020 * 275.02009 * 12 11 10 14 14 C 1.53023 * 109.46289 * 179.83344 * 13 12 11 15 15 C 1.52964 * 109.42419 * 59.80137 * 14 13 12 16 16 C 1.52948 * 109.81751 * 300.29596 * 15 14 13 17 17 C 1.52988 * 109.46453 * 154.97805 * 12 11 10 18 18 O 1.43703 * 109.39939 * 60.39590 * 15 14 13 19 19 C 1.44801 * 104.79035 * 95.49479 * 18 15 14 20 20 C 1.54921 * 101.72202 * 36.06551 * 19 18 15 21 21 O 1.43294 * 109.64828 * 179.71533 * 15 14 13 22 22 C 1.53007 * 117.49630 * 129.26192 * 9 7 2 23 23 C 1.52996 * 117.49628 * 60.60582 * 9 7 2 24 24 H 0.97001 * 119.99851 * 4.99519 * 1 2 3 25 25 H 1.09001 * 109.46911 * 54.80630 * 10 9 7 26 26 H 1.08994 * 109.47007 * 174.80263 * 10 9 7 27 27 H 1.00901 * 111.00389 * 61.44392 * 11 10 9 28 28 H 1.08997 * 109.45995 * 34.99626 * 12 11 10 29 29 H 1.09000 * 109.47530 * 299.84063 * 13 12 11 30 30 H 1.09006 * 109.47440 * 59.84785 * 13 12 11 31 31 H 1.09002 * 109.48501 * 299.81352 * 14 13 12 32 32 H 1.09000 * 109.48460 * 179.79538 * 14 13 12 33 33 H 1.09006 * 109.47845 * 299.70172 * 16 15 14 34 34 H 1.09001 * 109.47979 * 179.67809 * 16 15 14 35 35 H 1.08997 * 109.47358 * 300.14962 * 17 12 11 36 36 H 1.08999 * 109.46990 * 60.15464 * 17 12 11 37 37 H 1.08995 * 110.97632 * 277.95793 * 19 18 15 38 38 H 1.09001 * 111.01212 * 154.18873 * 19 18 15 39 39 H 1.09005 * 110.69112 * 206.07493 * 20 19 18 40 40 H 1.08998 * 110.69017 * 82.88076 * 20 19 18 41 41 H 1.09000 * 117.49850 * 0.02562 * 22 9 7 42 42 H 1.08998 * 117.49679 * 145.01976 * 22 9 7 43 43 H 1.09010 * 117.49660 * 214.97324 * 23 9 7 44 44 H 1.08998 * 117.50173 * 359.97071 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0797 9 6 1.2546 -2.4970 0.1032 10 6 0.9188 -2.9539 1.5243 11 7 2.1613 -3.2492 2.2501 12 6 1.8751 -3.8128 3.5762 13 6 1.6396 -2.6763 4.5730 14 6 1.3374 -3.2634 5.9535 15 6 2.5215 -4.1151 6.4144 16 6 2.7635 -5.2494 5.4173 17 6 3.0631 -4.6592 4.0376 18 8 3.6972 -3.2929 6.4973 19 6 3.7688 -2.8894 7.8861 20 6 3.2548 -4.1591 8.6097 21 8 2.2462 -4.6619 7.7099 22 6 1.5729 -3.5795 -0.9302 23 6 0.2453 -2.8209 -1.0001 24 1 -0.4850 0.8369 -0.0731 25 1 0.3752 -2.1631 2.0412 26 1 0.3012 -3.8510 1.4811 27 1 2.7411 -2.4267 2.3242 28 1 0.9838 -4.4376 3.5206 29 1 2.5317 -2.0527 4.6306 30 1 0.7947 -2.0722 4.2423 31 1 0.4433 -3.8843 5.8967 32 1 1.1731 -2.4539 6.6647 33 1 1.8747 -5.8777 5.3588 34 1 3.6116 -5.8491 5.7479 35 1 3.2318 -5.4672 3.3257 36 1 3.9540 -4.0340 4.0955 37 1 3.1155 -2.0386 8.0794 38 1 4.7954 -2.6641 8.1752 39 1 2.8169 -3.9020 9.5743 40 1 4.0587 -4.8849 8.7317 41 1 2.3251 -3.3493 -1.6848 42 1 1.5428 -4.6171 -0.5977 43 1 -0.6579 -3.3599 -0.7135 44 1 0.1233 -2.0914 -1.8006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797587841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:15 Heat of formation + Delta-G solvation = -75.710989 kcal Electronic energy + Delta-G solvation = -23194.691732 eV Core-core repulsion = 19919.167359 eV Total energy + Delta-G solvation = -3275.524374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91177 -37.80902 -36.29831 -35.05926 -33.11397 -31.84141 -30.75552 -29.75006 -27.31114 -25.46765 -23.92405 -23.36923 -22.58405 -21.24516 -20.79462 -19.77232 -18.87045 -17.23648 -16.87769 -15.90296 -15.60913 -15.40210 -14.59931 -14.57710 -14.25702 -13.88748 -13.74816 -13.54873 -13.14518 -12.93564 -12.75218 -12.55132 -12.21530 -12.05786 -11.62994 -11.48446 -11.34331 -11.05943 -10.95309 -10.88422 -10.88044 -10.62809 -10.41470 -10.34333 -10.14248 -10.00471 -9.42239 -9.24598 -8.78719 -8.34372 -7.98991 -7.39835 -5.97081 -4.04179 3.26694 3.31821 3.36845 3.39797 3.84929 4.37803 4.43171 4.62867 4.68206 4.80226 4.83628 4.98317 5.19173 5.26776 5.31090 5.34907 5.40866 5.51944 5.56393 5.59522 5.64653 5.71798 5.89851 5.98106 6.05074 6.08327 6.22853 6.34309 6.35452 6.53332 6.58140 6.62525 6.68020 6.91651 6.93457 7.00086 7.04332 7.26573 7.57541 7.67511 7.92922 8.08319 8.35634 8.55827 8.99261 9.61271 11.09991 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.004432 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.618358 B = 6315.770017 C = 7071.241085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.491 4.491 8 H 0.059 0.941 9 C 0.047 3.953 10 C 0.107 3.893 11 N -0.675 5.675 12 C 0.087 3.913 13 C -0.143 4.143 14 C -0.129 4.129 15 C 0.258 3.742 16 C -0.116 4.116 17 C -0.100 4.100 18 O -0.361 6.361 19 C 0.013 3.987 20 C 0.021 3.979 21 O -0.382 6.382 22 C -0.201 4.201 23 C -0.157 4.157 24 H 0.259 0.741 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.348 0.652 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -7.535 15.943 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.047 3.953 10 C -0.022 4.022 11 N -0.304 5.304 12 C -0.024 4.024 13 C -0.182 4.182 14 C -0.168 4.168 15 C 0.182 3.818 16 C -0.154 4.154 17 C -0.139 4.139 18 O -0.281 6.281 19 C -0.064 4.064 20 C -0.056 4.056 21 O -0.303 6.303 22 C -0.238 4.238 23 C -0.195 4.195 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.167 0.833 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.548 -8.095 15.545 18.107 hybrid contribution 0.020 1.940 0.663 2.050 sum 4.568 -6.155 16.209 17.930 Atomic orbital electron populations 1.70002 1.05802 1.26536 1.49445 1.24990 0.94771 0.98725 0.94818 0.86762 0.79667 0.83475 0.78690 1.20310 1.21465 1.20232 1.20435 0.92747 0.88810 1.50879 0.92305 1.18745 0.97770 0.92715 0.86116 1.21466 0.89180 0.96386 0.95194 1.60525 1.18711 1.36771 1.14434 1.21570 0.97232 0.94873 0.88712 1.22235 1.02671 0.99471 0.93841 1.22034 0.97355 0.99319 0.98108 1.23424 0.85376 0.88620 0.84383 1.21825 1.02677 0.96117 0.94803 1.21424 0.98978 0.99762 0.93704 1.89318 1.45385 1.67640 1.25773 1.24352 1.03309 0.97143 0.81584 1.24152 0.91862 0.95046 0.94521 1.88879 1.50869 1.71395 1.19172 1.22863 0.99677 0.95896 1.05404 1.22493 0.90836 1.01758 1.04385 0.93152 0.95179 0.94438 0.83302 0.91405 0.91052 0.91310 0.90506 0.91827 0.90291 0.91175 0.90913 0.91207 0.90850 0.87566 0.88602 0.90792 0.91017 0.91805 0.92436 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 12.65 55.43 0.70 -24.14 16 2 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.49 -13.20 8.33 -34.44 -0.29 -13.49 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.05 1.17 1.65 -155.66 -0.26 0.91 16 10 C 0.11 2.38 5.37 -3.83 -0.02 2.36 16 11 N -0.67 -13.20 6.22 -106.74 -0.66 -13.86 16 12 C 0.09 1.41 2.46 -67.72 -0.17 1.24 16 13 C -0.14 -2.23 5.03 -26.72 -0.13 -2.36 16 14 C -0.13 -1.75 5.29 -26.74 -0.14 -1.89 16 15 C 0.26 3.36 1.03 -26.78 -0.03 3.34 16 16 C -0.12 -1.48 5.34 -26.75 -0.14 -1.62 16 17 C -0.10 -1.44 5.39 -26.72 -0.14 -1.59 16 18 O -0.36 -4.77 9.66 -59.04 -0.57 -5.34 16 19 C 0.01 0.12 7.91 38.17 0.30 0.42 16 20 C 0.02 0.18 8.07 38.17 0.31 0.49 16 21 O -0.38 -4.77 10.87 -59.04 -0.64 -5.41 16 22 C -0.20 -4.58 9.96 -26.69 -0.27 -4.85 16 23 C -0.16 -3.80 9.14 -26.70 -0.24 -4.04 16 24 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 25 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 26 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 27 H 0.35 7.23 8.05 -39.29 -0.32 6.91 16 28 H 0.07 1.10 7.71 -51.93 -0.40 0.70 16 29 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 30 H 0.07 1.17 7.55 -51.93 -0.39 0.78 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.07 7.69 -51.93 -0.40 0.67 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 44 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -28.83 346.76 -10.04 -38.87 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.75 Total: 7.92 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.32 Total: -19.28 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.04 Total: -38.00 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.21 Total: -10.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.83 -10.04 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.842 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds