Wall clock time and date at job start Tue Mar 31 2020 05:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47142 * 269.99983 * 3 2 1 5 5 H 1.48503 * 109.47187 * 29.99719 * 3 2 1 6 6 H 1.48498 * 109.47199 * 150.00016 * 3 2 1 7 7 C 1.37878 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99447 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00082 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46981 * 180.02562 * 10 9 7 12 12 O 1.45204 * 109.47256 * 180.02562 * 11 10 9 13 13 C 1.34228 * 117.00318 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99541 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00175 * 179.97438 * 13 12 11 16 16 C 1.53123 * 109.57574 * 60.29783 * 15 13 12 17 17 C 1.53034 * 109.27992 * 177.60215 * 16 15 13 18 18 N 1.46847 * 109.51345 * 300.80438 * 17 16 15 19 19 C 1.46895 * 110.99982 * 185.84805 * 18 17 16 20 20 C 1.53001 * 117.49790 * 248.62113 * 19 18 17 21 21 C 1.53006 * 60.00157 * 252.50752 * 20 19 18 22 22 C 1.46843 * 111.20124 * 61.74903 * 18 17 16 23 23 C 1.53042 * 109.52278 * 298.25596 * 22 18 17 24 24 H 0.97006 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46977 * 60.00519 * 9 7 2 26 26 H 1.08997 * 109.47558 * 300.00387 * 9 7 2 27 27 H 1.09003 * 109.46886 * 60.00445 * 10 9 7 28 28 H 1.08996 * 109.47744 * 300.00216 * 10 9 7 29 29 H 1.09003 * 109.47009 * 60.00444 * 11 10 9 30 30 H 1.08997 * 109.47464 * 300.00349 * 11 10 9 31 31 H 1.09003 * 109.52421 * 300.12878 * 15 13 12 32 32 H 1.08997 * 109.51083 * 57.64808 * 16 15 13 33 33 H 1.08998 * 109.48980 * 297.53740 * 16 15 13 34 34 H 1.09002 * 109.46271 * 180.79158 * 17 16 15 35 35 H 1.08994 * 109.46242 * 60.81457 * 17 16 15 36 36 H 1.09002 * 115.55182 * 34.32677 * 19 18 17 37 37 H 1.08993 * 117.50121 * 359.97438 * 20 19 18 38 38 H 1.08996 * 117.49842 * 145.02062 * 20 19 18 39 39 H 1.08995 * 117.50070 * 252.51168 * 21 20 19 40 40 H 1.08994 * 117.49688 * 107.48335 * 21 20 19 41 41 H 1.08993 * 109.46313 * 58.27251 * 22 18 17 42 42 H 1.09000 * 109.46480 * 178.25361 * 22 18 17 43 43 H 1.08997 * 109.50758 * 179.11703 * 23 22 18 44 44 H 1.08998 * 109.50897 * 299.20258 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4238 -6.0907 -0.0006 13 6 1.9109 -7.3311 -0.0016 14 8 0.7130 -7.4894 -0.0024 15 6 2.8288 -8.5262 -0.0016 16 6 3.7075 -8.4982 1.2522 17 6 4.5944 -9.7451 1.2755 18 7 3.7509 -10.9471 1.2741 19 6 4.5631 -12.1604 1.4359 20 6 4.6674 -13.1057 0.2374 21 6 3.8306 -13.5036 1.4550 22 6 2.9325 -11.0202 0.0571 23 6 1.9960 -9.8111 -0.0028 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6042 0.8895 28 1 2.8720 -3.6043 -0.8904 29 1 0.8540 -5.0446 -0.8915 30 1 0.8533 -5.0451 0.8885 31 1 3.4603 -8.5004 -0.8897 32 1 3.0749 -8.4847 2.1397 33 1 4.3338 -7.6063 1.2375 34 1 5.2112 -9.7353 2.1742 35 1 5.2362 -9.7508 0.3946 36 1 5.4411 -12.0568 2.0735 37 1 4.1330 -12.8276 -0.6710 38 1 5.6141 -13.6242 0.0862 39 1 4.2269 -14.2838 2.1048 40 1 2.7461 -13.4869 1.3475 41 1 3.5822 -11.0200 -0.8180 42 1 2.3420 -11.9363 0.0709 43 1 1.3998 -9.8574 -0.9141 44 1 1.3361 -9.8185 0.8647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801874633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:11 Heat of formation + Delta-G solvation = -78.625144 kcal Electronic energy + Delta-G solvation = -21678.826262 eV Core-core repulsion = 18403.175521 eV Total energy + Delta-G solvation = -3275.650741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67427 -39.55062 -36.85702 -36.05712 -33.98518 -32.28399 -31.64325 -31.12135 -27.30068 -25.77071 -23.81318 -23.11138 -22.80542 -21.69411 -20.59378 -20.30394 -19.60964 -17.59152 -17.00760 -16.50281 -16.22839 -15.96009 -15.65726 -14.76576 -14.50601 -14.47542 -14.40954 -13.67328 -13.46973 -13.34267 -12.70228 -12.43257 -12.23424 -12.05962 -12.00102 -11.90228 -11.75058 -11.37599 -11.16520 -10.96992 -10.96225 -10.88552 -10.65296 -10.62681 -10.57407 -10.36372 -10.18975 -9.71544 -9.48531 -9.16158 -8.50188 -8.38888 -6.03513 -4.06573 2.35882 2.89383 3.23304 3.30882 3.37047 3.40574 3.63133 4.33131 4.34537 4.43368 4.48257 4.57248 4.61773 4.71372 4.88607 4.94392 5.05683 5.15131 5.25278 5.27457 5.32376 5.35139 5.42077 5.48594 5.56704 5.59178 5.64552 5.65869 5.73213 5.77342 5.91185 6.02891 6.05769 6.52920 6.54502 6.68248 6.72793 6.86548 6.99216 7.60341 7.71457 7.94392 7.96782 8.36006 8.99673 9.57641 11.07914 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048739 B = 0.002409 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.350664 B =11619.670491 C =12001.713325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.068 3.932 12 O -0.357 6.357 13 C 0.461 3.539 14 O -0.511 6.511 15 C -0.082 4.082 16 C -0.109 4.109 17 C 0.060 3.940 18 N -0.508 5.508 19 C 0.024 3.976 20 C -0.223 4.223 21 C -0.172 4.172 22 C 0.053 3.947 23 C -0.102 4.102 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -26.217 1.178 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.274 6.274 13 C 0.304 3.696 14 O -0.399 6.399 15 C -0.101 4.101 16 C -0.147 4.147 17 C -0.068 4.068 18 N -0.230 5.230 19 C -0.086 4.086 20 C -0.262 4.262 21 C -0.210 4.210 22 C -0.075 4.075 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.111 -26.027 1.590 27.621 hybrid contribution 0.719 0.910 -0.757 1.385 sum 9.830 -25.117 0.834 26.985 Atomic orbital electron populations 1.69966 1.06086 1.26755 1.50535 1.25039 0.94892 0.99385 0.95224 0.86540 0.79798 0.83221 0.78122 1.20625 1.21193 1.19815 1.21170 0.93108 0.90679 1.50980 0.92436 1.19053 0.93854 0.90777 0.97671 1.21756 0.99899 0.91033 1.01909 1.23495 0.91244 0.83704 1.02087 1.86492 1.42658 1.15204 1.83015 1.23530 0.88507 0.85023 0.72560 1.90653 1.17033 1.86891 1.45370 1.21115 0.96662 0.90682 1.01632 1.21606 0.98251 0.98088 0.96762 1.22094 0.94319 0.88826 1.01515 1.61808 1.22872 1.01012 1.37345 1.22649 0.98386 0.86824 1.00722 1.23573 1.02669 1.05844 0.94127 1.23071 0.99433 0.97676 1.00807 1.22230 0.95691 0.98948 0.90608 1.21519 0.97274 0.90964 1.04200 0.92892 0.96263 0.96234 0.92149 0.92207 0.91610 0.91563 0.87829 0.90276 0.89471 0.89909 0.94162 0.86206 0.88293 0.88836 0.88453 0.88482 0.94073 0.90045 0.90392 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 11 C 0.07 1.27 5.47 37.16 0.20 1.47 16 12 O -0.36 -5.97 10.16 -39.25 -0.40 -6.37 16 13 C 0.46 7.01 7.26 36.00 0.26 7.27 16 14 O -0.51 -9.22 15.73 -18.75 -0.29 -9.51 16 15 C -0.08 -0.88 2.69 -91.65 -0.25 -1.13 16 16 C -0.11 -1.04 5.31 -26.65 -0.14 -1.18 16 17 C 0.06 0.47 5.44 -3.84 -0.02 0.45 16 18 N -0.51 -4.26 4.88 -226.70 -1.11 -5.37 16 19 C 0.02 0.17 6.11 -67.71 -0.41 -0.25 16 20 C -0.22 -1.39 9.58 -26.73 -0.26 -1.64 16 21 C -0.17 -1.10 9.94 -26.72 -0.27 -1.37 16 22 C 0.05 0.43 4.12 -3.83 -0.02 0.41 16 23 C -0.10 -1.02 4.68 -26.64 -0.12 -1.14 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.57 8.07 -51.93 -0.42 0.16 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.12 0.73 8.04 -51.93 -0.42 0.32 16 37 H 0.10 0.63 5.97 -51.93 -0.31 0.32 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.67 7.23 -51.93 -0.38 0.29 16 41 H 0.04 0.31 7.12 -51.93 -0.37 -0.06 16 42 H 0.08 0.62 6.42 -51.93 -0.33 0.28 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -31.38 353.35 -10.16 -41.54 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.68 Total: -3.42 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.72 Total: -12.59 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: -0.37 Total: -31.57 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.69 Total: -15.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.38 -10.16 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801874633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.087 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds