Wall clock time and date at job start Tue Mar 31 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33455 * 118.45785 * 2 1 4 4 C 1.41791 * 118.79058 * 0.43921 * 3 2 1 5 5 O 1.21741 * 120.00335 * 103.32288 * 4 3 2 6 6 N 1.34779 * 119.99925 * 283.60126 * 4 3 2 7 7 C 1.46500 * 120.00230 * 179.72875 * 6 4 3 8 8 C 1.53001 * 109.47040 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46790 * 299.99156 * 8 7 6 10 10 C 1.52998 * 109.47293 * 59.99623 * 8 7 6 11 11 C 1.53008 * 109.46888 * 179.97438 * 8 7 6 12 12 C 1.50698 * 109.46750 * 179.97438 * 11 8 7 13 13 H 1.07995 * 120.00517 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99632 * 179.97438 * 12 11 8 15 15 N 1.31513 * 119.99715 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99945 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47256 * 90.00120 * 16 14 12 18 18 H 1.48502 * 109.46861 * 209.99967 * 16 14 12 19 19 H 1.48496 * 109.47433 * 330.00024 * 16 14 12 20 20 C 1.50420 * 122.42038 * 180.15488 * 3 2 1 21 21 C 1.53211 * 109.56498 * 342.58854 * 20 3 2 22 22 C 1.53477 * 108.25771 * 47.35771 * 21 20 3 23 23 O 1.34349 * 118.45460 * 180.26882 * 2 1 3 24 24 H 1.08998 * 109.46917 * 84.73056 * 1 2 3 25 25 H 1.08998 * 109.47185 * 204.73564 * 1 2 3 26 26 H 1.09002 * 109.46981 * 324.73201 * 1 2 3 27 27 H 0.97005 * 120.00054 * 359.72125 * 6 4 3 28 28 H 1.09006 * 109.46415 * 299.99370 * 7 6 4 29 29 H 1.08999 * 109.47341 * 59.99116 * 7 6 4 30 30 H 1.09003 * 109.47088 * 60.00380 * 9 8 7 31 31 H 1.09002 * 109.46867 * 180.02562 * 9 8 7 32 32 H 1.08998 * 109.47282 * 300.00094 * 9 8 7 33 33 H 1.08996 * 109.47349 * 60.00250 * 10 8 7 34 34 H 1.09002 * 109.46939 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.47134 * 299.99453 * 10 8 7 36 36 H 1.08999 * 109.46740 * 299.99713 * 11 8 7 37 37 H 1.08994 * 109.46955 * 59.99522 * 11 8 7 38 38 H 0.97001 * 119.99811 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.45568 * 102.62130 * 20 3 2 40 40 H 1.08999 * 109.45352 * 222.56072 * 20 3 2 41 41 H 1.08999 * 109.70328 * 167.05036 * 21 20 3 42 42 H 1.08999 * 109.70460 * 287.62331 * 21 20 3 43 43 H 1.09001 * 109.70717 * 56.98840 * 22 21 20 44 44 H 1.08999 * 109.70296 * 177.56180 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1430 1.1733 0.0000 4 6 1.3759 2.3658 0.0095 5 8 1.2578 3.0054 1.0386 6 7 0.7729 2.7882 -1.1194 7 6 -0.0246 4.0171 -1.1082 8 6 -0.5946 4.2678 -2.5057 9 6 0.5538 4.4143 -3.5061 10 6 -1.4800 3.0890 -2.9145 11 6 -1.4280 5.5510 -2.4939 12 6 -1.9889 5.7983 -3.8705 13 1 -1.7724 5.1096 -4.6737 14 6 -2.7787 6.9041 -4.1047 15 7 -3.2678 7.1202 -5.3062 16 14 -3.1538 8.0950 -2.7153 17 1 -2.1139 9.1545 -2.6771 18 1 -4.4842 8.7151 -2.9406 19 1 -3.1615 7.3623 -1.4237 20 6 3.6436 1.2772 -0.0034 21 6 4.2516 -0.0621 0.4254 22 6 3.5561 -1.1803 -0.3629 23 8 2.1472 -1.1812 -0.0055 24 1 -0.3633 0.0944 -1.0233 25 1 -0.3633 -0.9334 0.4300 26 1 -0.3633 0.8391 0.5934 27 1 0.8670 2.2785 -1.9394 28 1 -0.8429 3.9125 -0.3958 29 1 0.6061 4.8568 -0.8164 30 1 1.1472 3.5000 -3.5145 31 1 0.1477 4.5934 -4.5017 32 1 1.1845 5.2542 -3.2149 33 1 -2.2981 2.9847 -2.2019 34 1 -1.8865 3.2679 -3.9100 35 1 -0.8866 2.1747 -2.9230 36 1 -2.2460 5.4463 -1.7812 37 1 -0.7975 6.3910 -2.2024 38 1 -3.8231 7.8983 -5.4710 39 1 3.9879 1.5277 -1.0069 40 1 3.9551 2.0566 0.6920 41 1 5.3195 -0.0676 0.2068 42 1 4.0944 -0.2119 1.4935 43 1 3.6640 -0.9981 -1.4322 44 1 4.0014 -2.1418 -0.1073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807722371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:26 Heat of formation + Delta-G solvation = -83.814972 kcal Electronic energy + Delta-G solvation = -22852.133368 eV Core-core repulsion = 19576.257580 eV Total energy + Delta-G solvation = -3275.875789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.84809 -39.21851 -37.19259 -34.25444 -33.79201 -33.10739 -31.96610 -28.51577 -27.81694 -26.66027 -26.55774 -25.25842 -23.25462 -22.44480 -20.97074 -19.23291 -18.24481 -17.35894 -16.82503 -16.41865 -15.87982 -15.69190 -14.95980 -14.56733 -14.36390 -14.06619 -13.77788 -13.54789 -13.40903 -13.30486 -13.17502 -12.71811 -12.61926 -12.39745 -12.27867 -12.22151 -11.53069 -11.24032 -11.16598 -11.11391 -11.00500 -10.83007 -10.61568 -10.48191 -9.96657 -9.92263 -9.73524 -9.41577 -8.99217 -8.74784 -8.53436 -8.43762 -6.04290 -4.01460 1.61748 2.77791 2.92509 3.31805 3.39824 3.44088 3.65364 4.38669 4.39827 4.45864 4.58713 4.82753 4.98152 5.10273 5.14791 5.28378 5.28537 5.31269 5.35174 5.44361 5.53948 5.59623 5.63805 5.71215 5.77431 5.94743 6.11033 6.12305 6.13608 6.23789 6.32506 6.50714 6.59475 6.72667 6.91807 7.01417 7.05262 7.10662 7.20925 7.37254 7.72711 7.81374 8.43736 8.53211 8.99829 9.58571 11.08460 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032934 B = 0.003629 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.988885 B = 7713.268424 C = 7854.948303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.135 3.865 3 C -0.296 4.296 4 C 0.573 3.427 5 O -0.549 6.549 6 N -0.717 5.717 7 C 0.124 3.876 8 C -0.063 4.063 9 C -0.129 4.129 10 C -0.128 4.128 11 C -0.002 4.002 12 C -0.511 4.511 13 H 0.078 0.922 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.059 4.059 21 C -0.156 4.156 22 C 0.058 3.942 23 O -0.313 6.313 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.399 0.601 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.018 0.982 37 H 0.013 0.987 38 H 0.262 0.738 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 -16.917 8.495 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 C -0.301 4.301 4 C 0.360 3.640 5 O -0.427 6.427 6 N -0.369 5.369 7 C 0.001 3.999 8 C -0.063 4.063 9 C -0.186 4.186 10 C -0.185 4.185 11 C -0.040 4.040 12 C -0.549 4.549 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.096 4.096 21 C -0.194 4.194 22 C -0.016 4.016 23 O -0.225 6.225 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.234 0.766 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.013 -16.520 9.167 22.941 hybrid contribution 0.008 0.768 0.202 0.794 sum 13.020 -15.752 9.368 22.481 Atomic orbital electron populations 1.21002 0.87933 1.04452 1.04204 1.20932 0.93704 0.83946 0.92689 1.19860 0.97168 0.93160 1.19863 1.16660 0.78882 0.84788 0.83692 1.90821 1.62217 1.57827 1.31865 1.46360 1.51343 1.27266 1.11926 1.21634 0.94198 0.85522 0.98562 1.20684 0.95850 0.98159 0.91623 1.21773 0.96791 0.99106 1.00912 1.21770 0.98498 0.95171 1.03107 1.19590 0.94558 0.91449 0.98380 1.21083 1.29945 1.09419 0.94404 0.90412 1.25000 0.95535 0.97667 0.95238 1.69902 1.34922 1.28746 1.20761 0.86859 0.77681 0.81681 0.83548 1.20389 1.21515 1.18980 1.20102 0.89585 0.97740 1.02186 1.22194 1.00681 0.95097 1.01414 1.23484 0.78249 1.00476 0.99391 1.86155 1.24964 1.28361 1.83032 0.89267 0.90080 0.89483 0.76595 0.91871 0.91916 0.95035 0.90918 0.93442 0.93378 0.90901 0.95062 0.96367 0.96844 0.92807 0.90846 0.90030 0.89585 0.90362 0.90985 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.39 36.01 0.34 -0.90 16 2 C 0.14 1.54 6.70 -35.98 -0.24 1.30 16 3 C -0.30 -3.67 5.37 -105.07 -0.56 -4.24 16 4 C 0.57 8.73 4.96 -14.90 -0.07 8.66 16 5 O -0.55 -10.61 17.09 5.15 0.09 -10.52 16 6 N -0.72 -10.20 4.81 -63.17 -0.30 -10.51 16 7 C 0.12 2.08 4.56 -4.04 -0.02 2.07 16 8 C -0.06 -1.14 0.54 -154.50 -0.08 -1.22 16 9 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 10 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 11 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 12 C -0.51 -13.60 8.20 -34.44 -0.28 -13.88 16 13 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 14 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 15 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 16 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.06 -0.59 5.89 -27.91 -0.16 -0.76 16 21 C -0.16 -1.16 6.23 -26.37 -0.16 -1.33 16 22 C 0.06 0.41 7.15 37.40 0.27 0.68 16 23 O -0.31 -3.23 10.40 -14.89 -0.15 -3.38 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 27 H 0.40 4.94 6.12 -40.82 -0.25 4.69 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 35 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 36 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 37 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -32.03 344.89 -6.97 -39.00 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.33 Total: 1.54 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.57 Total: -11.77 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.47 Total: -36.91 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.07 Total: -13.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.03 -6.97 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.814 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds