Wall clock time and date at job start Tue Mar 31 2020 07:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47214 * 2 1 4 4 C 1.50698 * 109.47125 * 120.00041 * 2 1 3 5 5 O 1.21284 * 119.99911 * 107.35941 * 4 2 1 6 6 N 1.34779 * 120.00150 * 287.08396 * 4 2 1 7 7 C 1.46932 * 120.62952 * 356.33979 * 6 4 2 8 8 C 1.53619 * 108.54136 * 126.37002 * 7 6 4 9 9 C 1.53042 * 109.24279 * 54.85746 * 8 7 6 10 10 C 1.50704 * 109.45132 * 178.49672 * 9 8 7 11 11 H 1.07993 * 119.99867 * 120.06117 * 10 9 8 12 12 C 1.37875 * 119.99605 * 300.06285 * 10 9 8 13 13 N 1.31513 * 120.00601 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46838 * 90.00042 * 14 12 10 16 16 H 1.48501 * 109.47401 * 210.00032 * 14 12 10 17 17 H 1.48500 * 109.47161 * 330.00481 * 14 12 10 18 18 C 1.53041 * 109.53796 * 298.51150 * 9 8 7 19 19 C 1.46924 * 120.63267 * 176.62416 * 6 4 2 20 20 C 1.52998 * 109.47184 * 239.99981 * 2 1 3 21 21 C 1.53788 * 113.61383 * 159.13406 * 20 2 1 22 22 C 1.53950 * 87.02073 * 220.04931 * 21 20 2 23 23 C 1.53782 * 87.11211 * 25.36519 * 22 21 20 24 24 H 1.09000 * 109.47124 * 300.00057 * 1 2 3 25 25 H 1.08998 * 109.47118 * 59.99612 * 1 2 3 26 26 H 1.08998 * 109.47451 * 179.97438 * 1 2 3 27 27 H 0.96697 * 114.00120 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.58893 * 246.20567 * 7 6 4 29 29 H 1.09003 * 109.58480 * 6.63082 * 7 6 4 30 30 H 1.09004 * 109.63737 * 294.86450 * 8 7 6 31 31 H 1.08995 * 109.43361 * 174.72683 * 8 7 6 32 32 H 1.08998 * 109.45829 * 58.52963 * 9 8 7 33 33 H 0.96996 * 120.00245 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.49677 * 301.41247 * 18 9 8 35 35 H 1.09005 * 109.49805 * 181.31375 * 18 9 8 36 36 H 1.09003 * 109.58361 * 353.37421 * 19 6 4 37 37 H 1.09005 * 109.58804 * 113.65220 * 19 6 4 38 38 H 1.08991 * 112.84976 * 290.33235 * 20 2 1 39 39 H 1.08997 * 113.61173 * 334.57319 * 21 20 2 40 40 H 1.09007 * 113.61050 * 105.47154 * 21 20 2 41 41 H 1.08998 * 113.53948 * 270.81578 * 22 21 20 42 42 H 1.08996 * 113.74409 * 139.94239 * 22 21 20 43 43 H 1.09000 * 113.61669 * 220.08850 * 23 22 21 44 44 H 1.09003 * 113.61805 * 89.18462 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5299 -1.8122 1.1338 6 7 1.9337 -0.1190 2.4375 7 6 1.4127 1.2493 2.5604 8 6 0.2606 1.2439 3.5766 9 6 0.7523 0.6383 4.8933 10 6 -0.3639 0.6646 5.9055 11 1 -0.7227 -0.2578 6.3377 12 6 -0.9271 1.8662 6.2797 13 7 -0.4906 2.9894 5.7529 14 14 -2.3112 1.8986 7.5338 15 1 -1.7396 2.0255 8.8985 16 1 -3.2003 3.0561 7.2599 17 1 -3.0938 0.6401 7.4400 18 6 1.1935 -0.8081 4.6582 19 6 2.3509 -0.8280 3.6549 20 6 2.0400 -0.7212 -1.2492 21 6 3.4867 -0.3575 -1.6230 22 6 3.0234 -0.3618 -3.0912 23 6 1.6121 -0.0508 -2.5654 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 2.9703 1.4237 0.0004 28 1 2.2055 1.9125 2.9062 29 1 1.0458 1.5890 1.5918 30 1 -0.5668 0.6493 3.1893 31 1 -0.0753 2.2663 3.7494 32 1 1.5955 1.2189 5.2675 33 1 -0.8865 3.8347 6.0164 34 1 0.3574 -1.3834 4.2607 35 1 1.5216 -1.2462 5.6009 36 1 2.6033 -1.8594 3.4086 37 1 3.2203 -0.3322 4.0867 38 1 1.8520 -1.7945 -1.2246 39 1 3.7962 0.6246 -1.2657 40 1 4.2081 -1.1407 -1.3896 41 1 3.1055 -1.3372 -3.5707 42 1 3.4533 0.4415 -3.6894 43 1 0.8222 -0.5867 -3.0917 44 1 1.4081 1.0154 -2.4662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813514394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:39 Heat of formation + Delta-G solvation = -87.899633 kcal Electronic energy + Delta-G solvation = -23792.211295 eV Core-core repulsion = 20516.158382 eV Total energy + Delta-G solvation = -3276.052913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96725 -39.83863 -38.27537 -37.04634 -35.23864 -33.11985 -32.38333 -31.48987 -28.15786 -27.07276 -26.19341 -25.26533 -24.02942 -23.22942 -21.47207 -20.19627 -20.07600 -18.95171 -18.28261 -17.50820 -17.13252 -16.52090 -16.35751 -16.12558 -15.34890 -14.98768 -14.85897 -14.51790 -14.43833 -14.33429 -13.72013 -13.50709 -13.36773 -13.25778 -13.17142 -13.01347 -12.92296 -12.81199 -12.55098 -12.44919 -12.14636 -12.11203 -11.87597 -11.45591 -11.45106 -11.24192 -11.04009 -10.97463 -10.85870 -10.42843 -10.13166 -9.54459 -8.07326 -6.21144 1.41122 1.43081 1.49107 1.52170 2.05498 2.44079 3.09880 3.19313 3.32914 3.64800 3.66566 3.86974 4.00369 4.16741 4.22529 4.30390 4.31885 4.41426 4.53612 4.56450 4.69477 4.77084 4.79930 4.84053 4.88866 4.92602 4.96509 5.04101 5.09564 5.13649 5.15986 5.17659 5.29679 5.35276 5.44978 5.55515 5.62768 5.65585 5.98515 6.14412 6.38753 6.41961 6.59897 6.88363 7.12730 7.46635 8.95946 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.004360 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.464106 B = 6420.347829 C = 6789.573498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.141 3.859 3 O -0.539 6.539 4 C 0.484 3.516 5 O -0.579 6.579 6 N -0.592 5.592 7 C 0.104 3.896 8 C -0.113 4.113 9 C 0.045 3.955 10 C -0.537 4.537 11 H 0.046 0.954 12 C 0.019 3.981 13 N -0.911 5.911 14 Si 0.949 3.051 15 H -0.278 1.278 16 H -0.282 1.282 17 H -0.273 1.273 18 C -0.112 4.112 19 C 0.112 3.888 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.130 4.130 23 C -0.122 4.122 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.386 0.614 28 H 0.057 0.943 29 H 0.124 0.876 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.365 -2.945 -16.239 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.097 3.903 3 O -0.349 6.349 4 C 0.272 3.728 5 O -0.460 6.460 6 N -0.323 5.323 7 C -0.018 4.018 8 C -0.152 4.152 9 C 0.027 3.973 10 C -0.575 4.575 11 H 0.065 0.935 12 C -0.180 4.180 13 N -0.550 5.550 14 Si 0.775 3.225 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.198 1.198 18 C -0.150 4.150 19 C -0.010 4.010 20 C -0.143 4.143 21 C -0.179 4.179 22 C -0.168 4.168 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.238 0.762 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.966 -3.184 -16.265 17.302 hybrid contribution -0.177 -0.123 1.422 1.438 sum 4.789 -3.307 -14.844 15.944 Atomic orbital electron populations 1.21879 0.90405 1.03292 1.04407 1.21152 0.96434 0.82411 0.90285 1.86565 1.28189 1.23992 1.96128 1.22016 0.78467 0.86333 0.85995 1.90615 1.46572 1.22146 1.86685 1.48336 1.61439 1.16492 1.06028 1.22405 0.96372 0.80656 1.02330 1.21870 0.95793 1.02596 0.94955 1.18614 0.94564 0.91013 0.93146 1.21541 1.19281 0.92608 1.24036 0.93520 1.25629 0.99002 0.95430 0.97965 1.69955 1.43240 0.97922 1.43922 0.85705 0.79617 0.77580 0.79615 1.20342 1.20698 1.19781 1.21837 0.96639 0.98952 0.97593 1.21611 0.97022 0.97484 0.84897 1.23012 0.98024 1.00116 0.93180 1.23003 0.95354 1.01737 0.97780 1.22751 0.96254 1.02493 0.95255 1.22900 0.97582 1.01482 0.93932 0.92168 0.88528 0.90880 0.76219 0.92449 0.85862 0.95402 0.90536 0.98124 0.92914 0.94003 0.91885 0.90279 0.91406 0.89312 0.89158 0.92427 0.89931 0.90048 0.90660 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.37 71.98 0.60 -2.97 16 2 C 0.14 3.60 0.53 -11.54 -0.01 3.59 16 3 O -0.54 -12.36 9.26 -148.98 -1.38 -13.74 16 4 C 0.48 16.07 6.64 87.66 0.58 16.65 16 5 O -0.58 -22.17 15.28 -3.04 -0.05 -22.21 16 6 N -0.59 -20.91 2.97 -818.06 -2.43 -23.34 16 7 C 0.10 3.74 5.10 86.51 0.44 4.18 16 8 C -0.11 -5.11 5.09 30.82 0.16 -4.96 16 9 C 0.05 2.21 2.06 -11.51 -0.02 2.18 16 10 C -0.54 -29.23 8.56 25.60 0.22 -29.01 16 11 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 12 C 0.02 1.02 5.30 84.65 0.45 1.47 16 13 N -0.91 -50.71 11.30 21.45 0.24 -50.47 16 14 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 19 C 0.11 4.14 6.42 86.36 0.55 4.70 16 20 C -0.12 -2.72 2.55 -10.26 -0.03 -2.75 16 21 C -0.14 -2.69 7.41 31.18 0.23 -2.46 16 22 C -0.13 -1.97 8.09 31.18 0.25 -1.72 16 23 C -0.12 -2.02 6.64 31.12 0.21 -1.81 16 24 H 0.06 1.75 5.98 -2.39 -0.01 1.73 16 25 H 0.10 1.97 7.50 -2.39 -0.02 1.95 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.39 7.09 6.81 -74.06 -0.50 6.59 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.12 3.98 3.63 -2.39 -0.01 3.97 16 30 H 0.03 1.27 7.83 -2.38 -0.02 1.25 16 31 H 0.08 3.88 6.03 -2.39 -0.01 3.87 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.08 2.88 7.03 -2.39 -0.02 2.87 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.09 2.25 7.75 -2.39 -0.02 2.24 16 39 H 0.09 1.48 5.92 -2.39 -0.01 1.47 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.53 7.72 -2.39 -0.02 1.51 16 Total: -1.00 -61.65 331.41 2.71 -58.95 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.49 Total: 23.23 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.80 Total: -17.44 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -2.18 Total: -73.80 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.43 Total: -35.96 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -61.65 2.71 -58.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813514394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.953 kcal (2) G-P(sol) polarization free energy of solvation -61.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds