Wall clock time and date at job start Tue Mar 31 2020 08:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00118 * 2 1 4 4 O 1.20823 * 119.99729 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99999 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.49777 * 325.38087 * 5 3 2 7 7 C 1.52997 * 117.44419 * 110.76909 * 5 3 2 8 8 H 1.08998 * 119.53126 * 355.90649 * 7 5 3 9 9 C 1.54384 * 118.88717 * 198.88154 * 7 5 3 10 10 N 1.48565 * 104.59163 * 272.74731 * 9 7 5 11 11 C 1.46897 * 110.99863 * 159.04546 * 10 9 7 12 12 C 1.52997 * 109.47172 * 183.41510 * 11 10 9 13 13 C 1.53002 * 109.46819 * 319.14922 * 12 11 10 14 14 C 1.53002 * 109.47532 * 79.14835 * 12 11 10 15 15 C 1.53002 * 109.47261 * 199.15003 * 12 11 10 16 16 C 1.50705 * 109.47118 * 179.97438 * 15 12 11 17 17 H 1.07998 * 119.99668 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99791 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99851 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99942 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46983 * 90.00092 * 20 18 16 22 22 H 1.48501 * 109.47029 * 209.99846 * 20 18 16 23 23 H 1.48495 * 109.47509 * 330.00017 * 20 18 16 24 24 C 1.48550 * 104.22342 * 39.48141 * 10 9 7 25 25 C 1.53001 * 117.44349 * 179.97438 * 5 3 2 26 26 H 1.09002 * 119.52292 * 4.08719 * 25 5 3 27 27 H 1.09002 * 109.46851 * 60.00808 * 1 2 3 28 28 H 1.09005 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47348 * 300.00217 * 1 2 3 30 30 H 1.08993 * 110.41443 * 31.52191 * 9 7 5 31 31 H 1.09005 * 110.41261 * 153.85320 * 9 7 5 32 32 H 1.09004 * 109.46727 * 303.40794 * 11 10 9 33 33 H 1.08995 * 109.47852 * 63.40579 * 11 10 9 34 34 H 1.08991 * 109.47382 * 60.00420 * 13 12 11 35 35 H 1.09001 * 109.47066 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.47093 * 300.00029 * 13 12 11 37 37 H 1.08999 * 109.46918 * 49.15222 * 14 12 11 38 38 H 1.09001 * 109.47091 * 169.15426 * 14 12 11 39 39 H 1.09001 * 109.46871 * 289.15322 * 14 12 11 40 40 H 1.08998 * 109.46720 * 299.99884 * 15 12 11 41 41 H 1.09004 * 109.47109 * 59.99690 * 15 12 11 42 42 H 0.97006 * 119.99489 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.41424 * 201.73743 * 24 10 9 44 44 H 1.09004 * 110.41340 * 79.29729 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0770 0.4909 0.5599 7 6 4.2458 1.7923 -1.2688 8 1 3.6414 2.0211 -2.1466 9 6 5.7427 1.4868 -1.4910 10 7 6.4566 2.5932 -0.8030 11 6 7.8404 2.2124 -0.4899 12 6 8.5157 3.3414 0.2913 13 6 8.1106 4.6896 -0.3083 14 6 8.0767 3.2820 1.7557 15 6 10.0350 3.1818 0.2074 16 6 10.7002 4.2943 0.9764 17 1 10.0993 5.0406 1.4746 18 6 12.0758 4.3591 1.0437 19 7 12.6562 5.3295 1.7152 20 14 13.1150 3.0676 0.1825 21 1 13.4099 3.5130 -1.2031 22 1 14.3880 2.8814 0.9241 23 1 12.3732 1.7818 0.1418 24 6 5.6722 2.8175 0.4384 25 6 4.1994 2.6677 -0.0001 26 1 3.5604 3.5482 0.0667 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 6.0056 0.5284 -1.0433 31 1 5.9764 1.4851 -2.5557 32 1 7.8398 1.3038 0.1123 33 1 8.3867 2.0340 -1.4160 34 1 7.0283 4.8033 -0.2485 35 1 8.5921 5.4939 0.2480 36 1 8.4234 4.7319 -1.3516 37 1 8.1883 2.2634 2.1274 38 1 8.6963 3.9550 2.3484 39 1 7.0327 3.5852 1.8346 40 1 10.3235 2.2214 0.6345 41 1 10.3478 3.2242 -0.8359 42 1 13.6241 5.3753 1.7622 43 1 5.8532 3.8198 0.8266 44 1 5.9240 2.0674 1.1881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814173083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:22 Heat of formation + Delta-G solvation = -42.915642 kcal Electronic energy + Delta-G solvation = -22548.752117 eV Core-core repulsion = 19274.649856 eV Total energy + Delta-G solvation = -3274.102261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 4.64 seconds Orbital eigenvalues (eV) -41.15386 -39.84863 -37.31711 -36.52842 -33.60190 -32.03372 -28.98521 -28.70572 -27.48396 -26.83831 -26.35347 -24.38008 -22.41025 -21.19361 -20.57699 -20.25458 -18.17260 -17.89825 -17.22279 -16.73400 -16.60964 -15.68596 -15.00959 -14.33991 -14.25605 -14.11210 -13.72031 -13.44992 -13.32296 -13.01783 -12.85731 -12.55772 -12.31351 -12.19125 -12.10997 -11.63258 -11.45060 -11.16075 -11.01703 -10.88887 -10.80130 -10.74572 -10.47963 -10.40400 -10.33874 -10.17638 -9.78766 -9.66334 -9.21665 -8.89921 -8.49210 -8.31048 -5.99517 -3.95620 1.73778 2.25744 3.31835 3.32663 3.40325 3.43197 3.98530 4.27439 4.36644 4.48643 4.55737 4.73186 4.75645 4.81997 4.89082 5.04594 5.16332 5.33002 5.34997 5.42123 5.51351 5.58096 5.65659 5.78237 5.88447 5.93598 5.99695 6.06649 6.12807 6.22147 6.40933 6.54870 6.63365 6.84206 6.89063 7.08390 7.14258 7.21743 7.26664 7.34661 7.42689 7.50716 7.85507 8.59995 9.06264 9.63546 11.13558 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044224 B = 0.003156 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.981624 B = 8869.641832 C = 9068.490758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.496 3.504 4 O -0.504 6.504 5 C -0.143 4.143 6 H 0.132 0.868 7 C -0.130 4.130 8 H 0.122 0.878 9 C 0.059 3.941 10 N -0.499 5.499 11 C 0.052 3.948 12 C -0.048 4.048 13 C -0.117 4.117 14 C -0.150 4.150 15 C -0.003 4.003 16 C -0.507 4.507 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.058 3.942 25 C -0.125 4.125 26 H 0.130 0.870 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.261 0.739 43 H 0.107 0.893 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 -11.357 -4.719 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.340 3.660 4 O -0.391 6.391 5 C -0.163 4.163 6 H 0.149 0.851 7 C -0.149 4.149 8 H 0.140 0.860 9 C -0.068 4.068 10 N -0.223 5.223 11 C -0.076 4.076 12 C -0.049 4.049 13 C -0.174 4.174 14 C -0.206 4.206 15 C -0.041 4.041 16 C -0.545 4.545 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.069 4.069 25 C -0.144 4.144 26 H 0.148 0.852 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.061 -10.511 -5.007 24.064 hybrid contribution 0.458 -1.491 0.072 1.561 sum -20.603 -12.001 -4.935 24.349 Atomic orbital electron populations 1.23297 0.76075 1.03806 1.02664 1.86494 1.23512 1.33143 1.84013 1.22508 0.90231 0.81273 0.72038 1.90675 1.66831 1.36422 1.45162 1.21858 0.87963 1.01283 1.05174 0.85068 1.23407 0.96859 1.03047 0.91631 0.85996 1.22686 0.89414 0.93678 1.01044 1.65670 1.02186 1.36157 1.18259 1.22569 0.87701 0.97325 0.99989 1.20410 0.96799 0.93904 0.93748 1.21643 0.99254 0.96552 0.99985 1.22279 1.00300 1.01184 0.96877 1.19624 0.90538 0.97381 0.96539 1.21133 0.91442 1.10394 1.31482 0.90388 1.25019 0.98078 0.95378 0.95148 1.69912 1.09913 1.32310 1.42383 0.86846 0.79876 0.83040 0.79873 1.20442 1.21616 1.19183 1.23136 0.88046 1.03333 0.92421 1.23657 0.97742 0.92451 1.00554 0.85215 0.91815 0.87949 0.91777 0.93403 0.89086 0.95060 0.90768 0.93556 0.92275 0.93901 0.94410 0.90760 0.93335 0.96966 0.97063 0.92898 0.87500 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.51 10.56 -39.25 -0.41 -3.92 16 3 C 0.50 5.59 7.74 36.01 0.28 5.87 16 4 O -0.50 -6.89 16.08 -18.75 -0.30 -7.19 16 5 C -0.14 -1.47 5.90 -91.77 -0.54 -2.01 16 6 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 7 C -0.13 -1.35 6.80 -89.26 -0.61 -1.96 16 8 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 9 C 0.06 0.65 6.32 -2.18 -0.01 0.64 16 10 N -0.50 -6.75 4.32 -229.97 -0.99 -7.74 16 11 C 0.05 0.81 4.30 -3.83 -0.02 0.79 16 12 C -0.05 -0.90 0.53 -154.51 -0.08 -0.98 16 13 C -0.12 -2.19 7.70 37.16 0.29 -1.90 16 14 C -0.15 -2.66 7.37 37.16 0.27 -2.39 16 15 C 0.00 -0.07 3.02 -27.88 -0.08 -0.15 16 16 C -0.51 -13.81 8.05 -34.44 -0.28 -14.08 16 17 H 0.08 2.27 5.99 -52.49 -0.31 1.96 16 18 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 19 N -0.91 -27.64 13.96 55.43 0.77 -26.86 16 20 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C 0.06 0.72 3.92 -2.18 -0.01 0.71 16 25 C -0.13 -1.41 6.54 -89.25 -0.58 -2.00 16 26 H 0.13 1.53 7.80 -51.93 -0.40 1.13 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.05 0.50 7.92 -51.93 -0.41 0.09 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.47 7.67 -51.93 -0.40 0.07 16 33 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 34 H 0.05 0.77 5.52 -51.93 -0.29 0.48 16 35 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 38 H 0.07 1.54 6.34 -51.93 -0.33 1.21 16 39 H 0.05 0.74 4.41 -51.93 -0.23 0.51 16 40 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 41 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.11 1.42 4.82 -51.93 -0.25 1.17 16 44 H 0.05 0.65 7.19 -51.93 -0.37 0.28 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.05 337.55 -7.98 -39.03 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.06 Total: -0.93 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.41 Total: -14.41 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.22 Total: -34.60 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.72 Total: -11.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.05 -7.98 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814173083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.885 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.64 seconds