Wall clock time and date at job start Tue Mar 31 2020 08:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00118 * 2 1 4 4 O 1.20823 * 119.99729 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99999 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.49777 * 325.38087 * 5 3 2 7 7 C 1.52997 * 117.44419 * 110.76909 * 5 3 2 8 8 H 1.08998 * 119.53126 * 355.90649 * 7 5 3 9 9 C 1.54384 * 118.88717 * 198.88154 * 7 5 3 10 10 N 1.48565 * 104.59163 * 272.74731 * 9 7 5 11 11 C 1.46897 * 110.99863 * 159.04546 * 10 9 7 12 12 C 1.52997 * 109.47172 * 183.41510 * 11 10 9 13 13 C 1.53002 * 109.46819 * 319.14922 * 12 11 10 14 14 C 1.53002 * 109.47532 * 79.14835 * 12 11 10 15 15 C 1.53002 * 109.47261 * 199.15003 * 12 11 10 16 16 C 1.50705 * 109.47118 * 179.97438 * 15 12 11 17 17 H 1.07998 * 119.99668 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99791 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99851 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99942 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46983 * 90.00092 * 20 18 16 22 22 H 1.48501 * 109.47029 * 209.99846 * 20 18 16 23 23 H 1.48495 * 109.47509 * 330.00017 * 20 18 16 24 24 C 1.48550 * 104.22342 * 39.48141 * 10 9 7 25 25 C 1.53001 * 117.44349 * 179.97438 * 5 3 2 26 26 H 1.09002 * 119.52292 * 4.08719 * 25 5 3 27 27 H 1.09002 * 109.46851 * 60.00808 * 1 2 3 28 28 H 1.09005 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47348 * 300.00217 * 1 2 3 30 30 H 1.08993 * 110.41443 * 31.52191 * 9 7 5 31 31 H 1.09005 * 110.41261 * 153.85320 * 9 7 5 32 32 H 1.09004 * 109.46727 * 303.40794 * 11 10 9 33 33 H 1.08995 * 109.47852 * 63.40579 * 11 10 9 34 34 H 1.08991 * 109.47382 * 60.00420 * 13 12 11 35 35 H 1.09001 * 109.47066 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.47093 * 300.00029 * 13 12 11 37 37 H 1.08999 * 109.46918 * 49.15222 * 14 12 11 38 38 H 1.09001 * 109.47091 * 169.15426 * 14 12 11 39 39 H 1.09001 * 109.46871 * 289.15322 * 14 12 11 40 40 H 1.08998 * 109.46720 * 299.99884 * 15 12 11 41 41 H 1.09004 * 109.47109 * 59.99690 * 15 12 11 42 42 H 0.97006 * 119.99489 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.41424 * 201.73743 * 24 10 9 44 44 H 1.09004 * 110.41340 * 79.29729 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0770 0.4909 0.5599 7 6 4.2458 1.7923 -1.2688 8 1 3.6414 2.0211 -2.1466 9 6 5.7427 1.4868 -1.4910 10 7 6.4566 2.5932 -0.8030 11 6 7.8404 2.2124 -0.4899 12 6 8.5157 3.3414 0.2913 13 6 8.1106 4.6896 -0.3083 14 6 8.0767 3.2820 1.7557 15 6 10.0350 3.1818 0.2074 16 6 10.7002 4.2943 0.9764 17 1 10.0993 5.0406 1.4746 18 6 12.0758 4.3591 1.0437 19 7 12.6562 5.3295 1.7152 20 14 13.1150 3.0676 0.1825 21 1 13.4099 3.5130 -1.2031 22 1 14.3880 2.8814 0.9241 23 1 12.3732 1.7818 0.1418 24 6 5.6722 2.8175 0.4384 25 6 4.1994 2.6677 -0.0001 26 1 3.5604 3.5482 0.0667 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 6.0056 0.5284 -1.0433 31 1 5.9764 1.4851 -2.5557 32 1 7.8398 1.3038 0.1123 33 1 8.3867 2.0340 -1.4160 34 1 7.0283 4.8033 -0.2485 35 1 8.5921 5.4939 0.2480 36 1 8.4234 4.7319 -1.3516 37 1 8.1883 2.2634 2.1274 38 1 8.6963 3.9550 2.3484 39 1 7.0327 3.5852 1.8346 40 1 10.3235 2.2214 0.6345 41 1 10.3478 3.2242 -0.8359 42 1 13.6241 5.3753 1.7622 43 1 5.8532 3.8198 0.8266 44 1 5.9240 2.0674 1.1881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814173083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:12 Heat of formation + Delta-G solvation = -61.559000 kcal Electronic energy + Delta-G solvation = -22549.560553 eV Core-core repulsion = 19274.649856 eV Total energy + Delta-G solvation = -3274.910697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.02274 -40.80570 -38.55454 -37.48251 -35.06216 -33.84329 -30.22023 -29.64190 -28.84218 -27.93678 -27.82386 -25.53209 -24.00040 -22.30992 -21.40811 -21.14325 -19.45567 -19.00946 -18.78157 -18.02958 -17.39588 -16.75172 -16.27507 -15.84002 -15.60924 -15.28539 -14.71976 -14.60215 -14.48131 -14.34011 -14.20541 -13.85842 -13.58572 -13.29604 -13.01144 -12.92770 -12.87444 -12.54071 -12.42837 -12.32881 -11.94756 -11.92814 -11.86731 -11.69945 -11.64997 -11.34555 -11.30905 -11.10412 -10.83485 -10.73794 -10.67857 -9.32625 -8.19653 -6.19719 0.89018 1.38049 1.39198 1.50249 1.53147 2.41493 2.48803 3.01133 3.15630 3.44927 3.51365 3.69932 3.97072 3.98414 4.15846 4.19917 4.21616 4.28219 4.30524 4.36315 4.51623 4.56691 4.68599 4.75113 4.81642 4.83997 4.90807 4.97283 5.04973 5.07999 5.09262 5.14527 5.21749 5.27016 5.43494 5.48483 5.58393 5.65822 5.75170 5.82637 5.96553 6.11793 6.44088 6.61752 6.87684 7.42537 8.96645 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044224 B = 0.003156 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.981624 B = 8869.641832 C = 9068.490758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.498 3.502 4 O -0.534 6.534 5 C -0.133 4.133 6 H 0.148 0.852 7 C -0.120 4.120 8 H 0.129 0.871 9 C 0.061 3.939 10 N -0.510 5.510 11 C 0.063 3.937 12 C -0.048 4.048 13 C -0.107 4.107 14 C -0.144 4.144 15 C -0.002 4.002 16 C -0.502 4.502 17 H 0.043 0.957 18 C -0.002 4.002 19 N -0.956 5.956 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.246 1.246 24 C 0.059 3.941 25 C -0.134 4.134 26 H 0.121 0.879 27 H 0.063 0.937 28 H 0.134 0.866 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.261 0.739 43 H 0.095 0.905 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.471 -14.232 -6.061 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.343 3.657 4 O -0.424 6.424 5 C -0.152 4.152 6 H 0.165 0.835 7 C -0.139 4.139 8 H 0.147 0.853 9 C -0.066 4.066 10 N -0.234 5.234 11 C -0.065 4.065 12 C -0.048 4.048 13 C -0.165 4.165 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.540 4.540 17 H 0.061 0.939 18 C -0.197 4.197 19 N -0.599 5.599 20 Si 0.766 3.234 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.170 1.170 24 C -0.068 4.068 25 C -0.153 4.153 26 H 0.139 0.861 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.490 -13.414 -6.359 26.947 hybrid contribution 0.757 -0.550 0.526 1.074 sum -21.733 -13.964 -5.833 26.482 Atomic orbital electron populations 1.23599 0.74399 1.05909 1.02641 1.86485 1.25188 1.32253 1.83468 1.22682 0.90599 0.81234 0.71219 1.90667 1.67555 1.37439 1.46695 1.21869 0.87492 1.00788 1.05094 0.83457 1.23413 0.96705 1.02146 0.91620 0.85333 1.22730 0.89166 0.93232 1.01441 1.65609 1.01434 1.37611 1.18784 1.22304 0.88740 0.95888 0.99547 1.20331 0.94352 0.95223 0.94904 1.21536 1.00280 0.95651 0.98997 1.22216 1.01169 1.00875 0.95770 1.19596 0.93397 0.95450 0.95533 1.21443 0.91373 1.10567 1.30602 0.93866 1.25948 0.99755 0.97734 0.96265 1.70074 1.10205 1.34813 1.44761 0.85782 0.77980 0.80948 0.78640 1.19711 1.21654 1.16960 1.23035 0.88748 1.02761 0.92279 1.23475 0.97008 0.92988 1.01830 0.86096 0.91808 0.84831 0.91908 0.92134 0.88010 0.93931 0.90633 0.91371 0.95748 0.94285 0.93319 0.94636 0.90653 0.96706 0.96904 0.92972 0.88755 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.24 10.56 -51.40 -0.54 -6.78 16 3 C 0.50 10.26 7.74 71.24 0.55 10.81 16 4 O -0.53 -14.00 16.08 21.97 0.35 -13.65 16 5 C -0.13 -2.36 5.90 -11.54 -0.07 -2.43 16 6 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 7 C -0.12 -2.12 6.80 -9.91 -0.07 -2.19 16 8 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 9 C 0.06 1.13 6.32 86.45 0.55 1.68 16 10 N -0.51 -12.36 4.32 -881.49 -3.80 -16.16 16 11 C 0.06 1.79 4.30 86.30 0.37 2.16 16 12 C -0.05 -1.73 0.53 -52.18 -0.03 -1.76 16 13 C -0.11 -4.01 7.70 71.98 0.55 -3.45 16 14 C -0.14 -5.03 7.37 71.98 0.53 -4.50 16 15 C 0.00 -0.09 3.02 29.85 0.09 0.00 16 16 C -0.50 -28.04 8.05 25.60 0.21 -27.84 16 17 H 0.04 2.66 5.99 -2.91 -0.02 2.64 16 18 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 19 N -0.96 -60.33 13.96 21.45 0.30 -60.03 16 20 Si 0.94 44.45 27.47 68.60 1.88 46.34 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 24 C 0.06 1.33 3.92 86.46 0.34 1.67 16 25 C -0.13 -2.75 6.54 -9.91 -0.06 -2.81 16 26 H 0.12 2.73 7.80 -2.39 -0.02 2.71 16 27 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.06 1.00 7.92 -2.39 -0.02 0.98 16 31 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.04 1.12 7.67 -2.39 -0.02 1.11 16 33 H 0.08 2.15 7.99 -2.39 -0.02 2.13 16 34 H 0.07 2.21 5.52 -2.39 -0.01 2.20 16 35 H 0.02 1.04 6.62 -2.39 -0.02 1.03 16 36 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.05 1.57 7.90 -2.39 -0.02 1.55 16 38 H 0.03 1.50 6.34 -2.39 -0.02 1.49 16 39 H 0.07 2.21 4.41 -2.39 -0.01 2.20 16 40 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 41 H 0.01 0.57 7.56 -2.38 -0.02 0.55 16 42 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.09 2.36 4.82 -2.39 -0.01 2.35 16 44 H 0.06 1.27 7.19 -2.39 -0.02 1.25 16 Total: -1.00 -68.47 337.55 3.74 -64.73 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.93 Total: 12.34 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.62 Total: -26.78 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -3.50 Total: -76.20 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.19 Total: -20.43 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Total: -68.47 3.74 -64.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814173083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.169 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds