Wall clock time and date at job start Tue Mar 31 2020 07:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99458 * 2 1 4 4 C 1.50693 * 120.00439 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46953 * 354.77483 * 4 2 1 6 6 C 1.52999 * 109.47365 * 234.77442 * 4 2 1 7 7 C 1.50694 * 109.47086 * 114.77400 * 4 2 1 8 8 O 1.20825 * 120.00271 * 359.94261 * 7 4 2 9 9 O 1.34236 * 119.99841 * 179.97438 * 7 4 2 10 10 C 1.45202 * 116.99804 * 180.02562 * 9 7 4 11 11 C 1.53352 * 109.41596 * 270.12306 * 10 9 7 12 12 C 1.53197 * 109.14874 * 178.67498 * 11 10 9 13 13 N 1.46930 * 108.89015 * 54.57778 * 12 11 10 14 14 C 1.36939 * 120.62579 * 126.29880 * 13 12 11 15 15 H 1.07998 * 119.99845 * 322.17951 * 14 13 12 16 16 C 1.38808 * 119.99993 * 142.18035 * 14 13 12 17 17 N 1.31622 * 119.99940 * 349.38852 * 16 14 13 18 18 Si 1.86797 * 120.00433 * 169.38919 * 16 14 13 19 19 H 1.48505 * 109.46781 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47480 * 119.99670 * 18 16 14 21 21 H 1.48496 * 109.47130 * 240.00226 * 18 16 14 22 22 C 1.46917 * 118.74072 * 306.32538 * 13 12 11 23 23 C 1.53041 * 109.45874 * 150.00074 * 10 9 7 24 24 H 1.07997 * 120.00132 * 354.14185 * 1 2 3 25 25 H 1.08003 * 119.99900 * 174.14482 * 1 2 3 26 26 H 1.09008 * 109.47208 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46972 * 299.99319 * 3 2 1 28 28 H 1.09000 * 109.47930 * 59.99785 * 3 2 1 29 29 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.46873 * 299.99881 * 5 4 2 31 31 H 1.08993 * 109.47365 * 60.00058 * 5 4 2 32 32 H 1.08998 * 109.46956 * 300.00102 * 6 4 2 33 33 H 1.09009 * 109.46844 * 59.99583 * 6 4 2 34 34 H 1.08997 * 109.47357 * 180.02562 * 6 4 2 35 35 H 1.08992 * 109.46044 * 30.02641 * 10 9 7 36 36 H 1.09002 * 109.68484 * 58.71415 * 11 10 9 37 37 H 1.08996 * 109.47851 * 298.51538 * 11 10 9 38 38 H 1.09002 * 109.58723 * 294.72486 * 12 11 10 39 39 H 1.09000 * 109.58769 * 174.44079 * 12 11 10 40 40 H 0.96996 * 120.00150 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.58604 * 173.39683 * 22 13 12 42 42 H 1.09001 * 109.58504 * 293.67562 * 22 13 12 43 43 H 1.09003 * 109.50103 * 61.43437 * 23 10 9 44 44 H 1.09004 * 109.52477 * 301.35024 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 1.0746 -2.4649 0.1325 6 6 3.0392 -1.3301 1.1789 7 6 2.8303 -1.4428 -1.2894 8 8 2.7702 -0.5713 -2.1241 9 8 3.5797 -2.5342 -1.5113 10 6 4.2913 -2.5992 -2.7754 11 6 3.4031 -3.2766 -3.8261 12 6 4.1467 -3.3122 -5.1651 13 7 5.4512 -3.9589 -4.9677 14 6 5.8272 -5.0223 -5.7442 15 1 5.0975 -5.7636 -6.0347 16 6 7.1463 -5.1476 -6.1578 17 7 7.9875 -4.1499 -5.9860 18 14 7.7278 -6.7320 -6.9583 19 1 6.5973 -7.6919 -7.0345 20 1 8.2244 -6.4418 -8.3273 21 1 8.8239 -7.3223 -6.1488 22 6 6.3442 -3.4433 -3.9212 23 6 5.5792 -3.4060 -2.5945 24 1 -0.5400 0.9304 0.0955 25 1 -0.5400 -0.9305 -0.0954 26 1 3.1351 1.1061 -0.0005 27 1 1.8001 1.8767 -0.8901 28 1 1.8001 1.8769 0.8899 29 1 1.6197 -3.4089 0.1334 30 1 0.5200 -2.3652 1.0655 31 1 0.3796 -2.4471 -0.7070 32 1 3.7437 -0.5037 1.0850 33 1 2.4845 -1.2303 2.1120 34 1 3.5845 -2.2738 1.1791 35 1 4.5382 -1.5903 -3.1054 36 1 2.4757 -2.7153 -3.9399 37 1 3.1763 -4.2944 -3.5087 38 1 4.2943 -2.2952 -5.5282 39 1 3.5641 -3.8787 -5.8916 40 1 8.9091 -4.2373 -6.2753 41 1 7.2106 -4.0976 -3.8251 42 1 6.6730 -2.4378 -4.1842 43 1 5.3319 -4.4225 -2.2885 44 1 6.1988 -2.9366 -1.8303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820308977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:04 Heat of formation + Delta-G solvation = -62.677998 kcal Electronic energy + Delta-G solvation = -23089.411363 eV Core-core repulsion = 19814.452142 eV Total energy + Delta-G solvation = -3274.959221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69721 -38.14386 -36.76577 -35.67862 -32.78582 -32.07482 -30.28743 -29.65821 -28.76620 -26.16662 -25.40690 -24.15958 -22.43986 -22.10585 -20.78984 -19.35540 -18.09136 -17.13585 -16.81495 -16.11423 -15.75051 -15.40454 -14.84473 -14.27145 -14.13271 -13.59136 -13.47044 -13.25533 -13.06184 -12.99584 -12.57890 -12.47200 -12.38269 -12.33669 -12.12865 -11.94881 -11.50080 -11.23039 -11.14470 -11.02335 -10.89278 -10.82050 -10.69091 -10.40663 -10.15885 -10.14557 -9.94263 -9.62105 -9.43036 -9.20301 -8.52120 -6.58403 -5.83532 -3.37362 1.94394 2.42530 3.05265 3.34810 3.42543 3.45013 4.28514 4.45722 4.55141 4.72482 4.91433 5.05234 5.27557 5.35367 5.37540 5.41766 5.44139 5.49819 5.52748 5.55043 5.56420 5.61994 5.74276 5.76453 5.89331 5.95854 6.00033 6.02931 6.24387 6.35023 6.42920 6.45103 6.52195 6.58646 6.66314 6.75974 6.89696 6.99519 7.24357 7.52412 7.79095 8.03850 8.47783 9.18258 9.77212 10.40376 11.25176 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039285 B = 0.003598 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.566214 B = 7779.324154 C = 7805.232078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.112 4.112 4 C -0.021 4.021 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.466 3.534 8 O -0.503 6.503 9 O -0.354 6.354 10 C 0.098 3.902 11 C -0.145 4.145 12 C 0.149 3.851 13 N -0.590 5.590 14 C -0.261 4.261 15 H 0.063 0.937 16 C 0.012 3.988 17 N -0.900 5.900 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.179 3.821 23 C -0.135 4.135 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.066 0.934 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 6.258 15.013 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.100 4.100 3 C -0.169 4.169 4 C -0.022 4.022 5 C -0.200 4.200 6 C -0.195 4.195 7 C 0.308 3.692 8 O -0.391 6.391 9 O -0.271 6.271 10 C 0.044 3.956 11 C -0.184 4.184 12 C 0.022 3.978 13 N -0.313 5.313 14 C -0.391 4.391 15 H 0.080 0.920 16 C -0.188 4.188 17 N -0.542 5.542 18 Si 0.733 3.267 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.215 1.215 22 C 0.052 3.948 23 C -0.174 4.174 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.817 6.500 14.657 19.918 hybrid contribution 0.385 -0.632 -0.604 0.955 sum -11.432 5.867 14.053 19.042 Atomic orbital electron populations 1.23801 0.95089 1.02435 1.01832 1.21304 0.95021 0.93964 0.99686 1.20782 1.00147 0.94190 1.01785 1.19570 0.95491 0.95394 0.91774 1.21942 0.98458 0.96917 1.02710 1.21834 0.98294 1.03509 0.95876 1.23386 0.77571 0.79901 0.88328 1.90638 1.60881 1.41173 1.46366 1.86541 1.56999 1.41757 1.41799 1.22980 0.92051 1.00658 0.79869 1.22509 0.97940 1.00497 0.97501 1.20884 0.88053 0.96246 0.92597 1.43987 1.14763 1.35615 1.36958 1.19143 0.94141 0.99601 1.26214 0.91965 1.25346 0.98062 0.97298 0.98078 1.69990 1.04645 1.29791 1.49803 0.86211 0.78560 0.83058 0.78863 1.20081 1.21523 1.21454 1.20702 0.92601 0.98264 0.83185 1.22443 0.93913 0.99525 1.01530 0.88080 0.87682 0.92116 0.91047 0.91809 0.90693 0.90905 0.91781 0.91841 0.91079 0.90674 0.90470 0.92780 0.91476 0.96120 0.92132 0.93517 0.89783 0.95805 0.91491 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 13.32 29.01 0.39 -1.49 16 2 C -0.10 -1.10 4.34 -101.07 -0.44 -1.54 16 3 C -0.11 -1.19 8.87 36.01 0.32 -0.87 16 4 C -0.02 -0.25 0.77 -156.82 -0.12 -0.37 16 5 C -0.14 -1.40 7.09 37.16 0.26 -1.14 16 6 C -0.14 -1.34 8.18 37.16 0.30 -1.03 16 7 C 0.47 7.32 6.41 36.00 0.23 7.55 16 8 O -0.50 -9.27 14.65 -18.75 -0.27 -9.54 16 9 O -0.35 -5.96 9.69 -39.27 -0.38 -6.34 16 10 C 0.10 1.86 2.42 -26.53 -0.06 1.79 16 11 C -0.14 -2.78 5.75 -26.45 -0.15 -2.93 16 12 C 0.15 3.28 6.50 -3.71 -0.02 3.25 16 13 N -0.59 -15.01 2.94 -172.32 -0.51 -15.51 16 14 C -0.26 -7.19 9.49 -15.06 -0.14 -7.33 16 15 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 16 C 0.01 0.34 5.01 -17.43 -0.09 0.25 16 17 N -0.90 -26.03 11.56 55.49 0.64 -25.39 16 18 Si 0.90 21.50 29.57 -169.99 -5.03 16.47 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.18 4.26 5.23 -3.72 -0.02 4.24 16 23 C -0.13 -2.64 5.74 -26.61 -0.15 -2.79 16 24 H 0.10 0.83 8.05 -52.49 -0.42 0.41 16 25 H 0.11 0.91 5.74 -52.48 -0.30 0.61 16 26 H 0.06 0.68 6.81 -51.92 -0.35 0.33 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.07 0.55 7.82 -51.93 -0.41 0.15 16 31 H 0.06 0.64 7.16 -51.93 -0.37 0.27 16 32 H 0.06 0.62 6.90 -51.93 -0.36 0.26 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.08 2.19 6.63 -51.93 -0.34 1.85 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -30.52 348.71 -7.52 -38.04 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.54 Total: -0.60 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.30 Total: -2.39 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.13 Total: -40.90 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.65 Total: -15.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.52 -7.52 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820308977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.633 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds