Wall clock time and date at job start Tue Mar 31 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 C 1.52996 * 109.47468 * 240.00076 * 2 1 3 5 5 C 1.50689 * 113.00105 * 52.75456 * 4 2 1 6 6 O 1.21286 * 120.00036 * 97.56647 * 5 4 2 7 7 N 1.34776 * 120.00411 * 277.56931 * 5 4 2 8 8 C 1.46926 * 120.62712 * 356.70984 * 7 5 4 9 9 C 1.53185 * 108.77595 * 126.37405 * 8 7 5 10 10 C 1.53045 * 109.31610 * 54.62988 * 9 8 7 11 11 C 1.53041 * 109.53784 * 298.63844 * 10 9 8 12 12 H 1.08994 * 109.49523 * 301.41239 * 11 10 9 13 13 C 1.50699 * 109.49579 * 181.31323 * 11 10 9 14 14 H 1.08000 * 120.00077 * 274.50186 * 13 11 10 15 15 C 1.37872 * 119.99748 * 94.49787 * 13 11 10 16 16 N 1.31516 * 120.00041 * 184.05459 * 15 13 11 17 17 Si 1.86799 * 120.00374 * 4.05979 * 15 13 11 18 18 H 1.48500 * 109.47467 * 93.87334 * 17 15 13 19 19 H 1.48504 * 109.47514 * 213.87895 * 17 15 13 20 20 H 1.48508 * 109.46697 * 333.87427 * 17 15 13 21 21 C 1.46926 * 120.63374 * 176.43556 * 7 5 4 22 22 C 1.54043 * 113.81318 * 280.93037 * 4 2 1 23 23 O 1.44451 * 85.42271 * 223.23644 * 22 4 2 24 24 C 1.44174 * 93.38094 * 24.09342 * 23 22 4 25 25 H 1.09003 * 109.46502 * 65.80056 * 1 2 3 26 26 H 1.08993 * 109.47090 * 185.79858 * 1 2 3 27 27 H 1.09002 * 109.47475 * 305.80592 * 1 2 3 28 28 H 1.09007 * 109.46979 * 119.99495 * 2 1 3 29 29 H 1.09002 * 109.46777 * 60.00060 * 3 2 1 30 30 H 1.09004 * 109.46868 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46897 * 299.99779 * 3 2 1 32 32 H 1.09012 * 109.58293 * 246.15861 * 8 7 5 33 33 H 1.08992 * 109.58812 * 6.43948 * 8 7 5 34 34 H 1.09000 * 109.50214 * 174.58656 * 9 8 7 35 35 H 1.09001 * 109.49282 * 294.67916 * 9 8 7 36 36 H 1.09004 * 109.45452 * 58.66100 * 10 9 8 37 37 H 1.08993 * 109.45787 * 178.62855 * 10 9 8 38 38 H 0.97000 * 120.00585 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.58475 * 353.40922 * 21 7 5 40 40 H 1.08998 * 109.58960 * 113.84263 * 21 7 5 41 41 H 1.08998 * 113.86485 * 337.34572 * 22 4 2 42 42 H 1.08997 * 113.86176 * 109.04614 * 22 4 2 43 43 H 1.08997 * 113.86223 * 221.77021 * 24 23 22 44 44 H 1.08996 * 113.86927 * 90.05651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.4449 -0.1824 -2.5244 6 8 2.0601 0.6265 -3.1864 7 7 0.2289 -0.5993 -2.9294 8 6 -0.4974 -1.6315 -2.1772 9 6 -1.8926 -1.1009 -1.8333 10 6 -2.5929 -0.6488 -3.1168 11 6 -1.7922 0.4827 -3.7654 12 1 -1.7028 1.3130 -3.0649 13 6 -2.4993 0.9490 -5.0118 14 1 -2.3305 0.4418 -5.9502 15 6 -3.3619 2.0231 -4.9540 16 7 -4.0396 2.3804 -6.0229 17 14 -3.5677 2.9709 -3.3576 18 1 -2.6450 4.1345 -3.3501 19 1 -4.9689 3.4495 -3.2431 20 1 -3.2530 2.0822 -2.2102 21 6 -0.3982 -0.0261 -4.1281 22 6 1.9955 -2.2573 -1.1423 23 8 3.3075 -2.2217 -1.7455 24 6 3.5718 -0.8779 -1.2951 25 1 -0.3632 0.4213 -0.9374 26 1 -0.3633 -1.0223 0.1038 27 1 -0.3634 0.6012 0.8334 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 -0.5884 -2.5312 -2.7860 33 1 0.0438 -1.8641 -1.2601 34 1 -2.4757 -1.8907 -1.3595 35 1 -1.8023 -0.2557 -1.1510 36 1 -2.6607 -1.4885 -3.8085 37 1 -3.5952 -0.2934 -2.8777 38 1 -4.6468 3.1358 -5.9823 39 1 0.2071 0.8022 -4.4965 40 1 -0.4810 -0.7921 -4.8991 41 1 1.9912 -2.6281 -0.1174 42 1 1.2332 -2.7209 -1.7684 43 1 4.0570 -0.2498 -2.0422 44 1 4.0498 -0.8265 -0.3169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824747073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:25 Heat of formation + Delta-G solvation = -32.600353 kcal Electronic energy + Delta-G solvation = -24555.306336 eV Core-core repulsion = 21281.651380 eV Total energy + Delta-G solvation = -3273.654956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77356 -38.90777 -37.00464 -35.44979 -33.43608 -31.86634 -30.87478 -29.11820 -27.66244 -26.33428 -25.34970 -25.09644 -22.08052 -21.89894 -21.55859 -19.16570 -18.57000 -17.04610 -16.59873 -16.52144 -16.10613 -15.49130 -14.80028 -14.72803 -14.58383 -13.98899 -13.87876 -13.45723 -13.24302 -12.87154 -12.76414 -12.75253 -12.55985 -12.39747 -12.26770 -12.00287 -11.54344 -11.23744 -11.13804 -10.99467 -10.75133 -10.69896 -10.40018 -10.22140 -10.04819 -9.93168 -9.86959 -9.60240 -9.32361 -8.99717 -8.58400 -8.11284 -6.13475 -4.13643 2.77456 3.22512 3.26246 3.33265 3.33745 3.61943 3.90745 4.36751 4.39233 4.64319 4.82831 4.98584 5.04843 5.08197 5.10172 5.17633 5.28209 5.31859 5.46470 5.50174 5.62348 5.64809 5.74904 5.79155 5.82925 5.88277 5.93119 5.96433 6.03475 6.12811 6.19671 6.21402 6.27682 6.40121 6.55687 6.66530 6.79647 6.85961 7.22572 7.36669 7.69498 7.79444 8.42331 8.48383 8.91332 9.49131 10.99510 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.005985 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.596019 B = 4676.953174 C = 4827.935005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.148 4.148 5 C 0.542 3.458 6 O -0.539 6.539 7 N -0.601 5.601 8 C 0.090 3.910 9 C -0.154 4.154 10 C -0.111 4.111 11 C 0.005 3.995 12 H 0.036 0.964 13 C -0.512 4.512 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.262 1.262 21 C 0.123 3.877 22 C 0.031 3.969 23 O -0.377 6.377 24 C 0.059 3.941 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 -8.279 15.588 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.097 4.097 3 C -0.207 4.207 4 C -0.152 4.152 5 C 0.329 3.671 6 O -0.416 6.416 7 N -0.333 5.333 8 C -0.033 4.033 9 C -0.192 4.192 10 C -0.150 4.150 11 C -0.015 4.015 12 H 0.054 0.946 13 C -0.550 4.550 14 H 0.093 0.907 15 C -0.128 4.128 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.186 1.186 21 C 0.002 3.998 22 C -0.045 4.045 23 O -0.296 6.296 24 C -0.018 4.018 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.729 -7.899 14.967 19.521 hybrid contribution -0.494 0.670 0.914 1.237 sum 9.236 -7.229 15.881 19.742 Atomic orbital electron populations 1.22690 0.94289 1.02355 1.03905 1.21108 0.96840 0.96882 0.94912 1.21831 1.01056 0.95218 1.02552 1.23951 0.98181 0.97014 0.96014 1.19457 0.81176 0.81484 0.85013 1.90676 1.60534 1.34463 1.55912 1.48319 1.16825 1.39549 1.28621 1.22351 0.93776 0.90793 0.96388 1.22431 0.95088 1.01231 1.00419 1.21837 0.99249 0.99764 0.94101 1.19435 0.90873 0.94088 0.97109 0.94622 1.20860 1.24866 1.14862 0.94444 0.90709 1.25030 0.94982 0.96769 0.96028 1.69901 1.27053 1.27685 1.28793 0.86882 0.77327 0.80652 0.84944 1.20349 1.21468 1.18624 1.21926 0.95316 0.98175 0.84375 1.24688 0.86683 0.93458 0.99691 1.89763 1.33284 1.33372 1.73172 1.23939 0.93407 0.83656 1.00768 0.90052 0.91589 0.92243 0.90119 0.92328 0.92460 0.91856 0.91511 0.89099 0.91865 0.90745 0.92686 0.92598 0.92588 0.89604 0.92131 0.89300 0.87513 0.87910 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 6.18 37.16 0.23 -1.76 16 2 C -0.08 -0.84 2.43 -90.62 -0.22 -1.06 16 3 C -0.15 -1.71 8.91 37.16 0.33 -1.38 16 4 C -0.15 -1.88 0.28 -154.58 -0.04 -1.92 16 5 C 0.54 9.32 5.20 -10.99 -0.06 9.26 16 6 O -0.54 -11.23 15.60 5.55 0.09 -11.14 16 7 N -0.60 -10.25 2.30 -173.03 -0.40 -10.65 16 8 C 0.09 1.20 3.60 -3.71 -0.01 1.18 16 9 C -0.15 -2.23 5.07 -26.61 -0.13 -2.36 16 10 C -0.11 -2.12 5.15 -26.69 -0.14 -2.26 16 11 C 0.00 0.10 1.84 -91.87 -0.17 -0.07 16 12 H 0.04 0.83 5.16 -51.93 -0.27 0.57 16 13 C -0.51 -13.84 8.87 -34.44 -0.31 -14.14 16 14 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 17 Si 0.87 21.15 27.25 -169.99 -4.63 16.52 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.26 -5.93 6.45 56.52 0.36 -5.56 16 21 C 0.12 2.52 5.66 -3.93 -0.02 2.50 16 22 C 0.03 0.34 6.73 37.65 0.25 0.60 16 23 O -0.38 -5.25 12.41 -35.23 -0.44 -5.69 16 24 C 0.06 0.72 7.55 37.65 0.28 1.01 16 25 H 0.08 1.19 4.22 -51.93 -0.22 0.97 16 26 H 0.07 0.63 5.56 -51.93 -0.29 0.34 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.59 7.61 -51.93 -0.39 0.19 16 31 H 0.06 0.92 7.55 -51.93 -0.39 0.53 16 32 H 0.07 0.84 8.05 -51.92 -0.42 0.42 16 33 H 0.09 0.97 2.10 -51.93 -0.11 0.87 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.10 4.90 -51.93 -0.25 0.85 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.09 1.95 7.03 -51.93 -0.36 1.59 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 42 H 0.11 1.15 5.16 -51.93 -0.27 0.89 16 43 H 0.10 1.39 7.51 -51.93 -0.39 1.00 16 44 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -31.73 319.31 -6.65 -38.38 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.75 Total: 2.35 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.10 Total: -8.42 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.38 Total: -36.80 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.35 Total: -16.83 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.63 Total: 16.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.73 -6.65 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824747073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.776 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds