Wall clock time and date at job start Tue Mar 31 2020 07:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46697 * 2 1 4 4 C 1.52999 * 109.47070 * 119.99640 * 2 1 3 5 5 C 1.50700 * 113.00065 * 300.07132 * 4 2 1 6 6 O 1.21281 * 120.00322 * 101.91437 * 5 4 2 7 7 N 1.34776 * 120.00061 * 281.91001 * 5 4 2 8 8 C 1.46926 * 120.63034 * 357.70845 * 7 5 4 9 9 C 1.53192 * 108.77609 * 233.58660 * 8 7 5 10 10 C 1.53042 * 109.31216 * 305.36412 * 9 8 7 11 11 C 1.53033 * 109.53863 * 61.36540 * 10 9 8 12 12 H 1.09004 * 109.50156 * 58.61656 * 11 10 9 13 13 C 1.50700 * 109.49963 * 178.68415 * 11 10 9 14 14 H 1.08002 * 119.99885 * 119.99976 * 13 11 10 15 15 C 1.37877 * 120.00181 * 300.00328 * 13 11 10 16 16 N 1.31512 * 119.99864 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00256 * 180.27497 * 15 13 11 18 18 H 1.48503 * 109.46937 * 179.72054 * 17 15 13 19 19 H 1.48496 * 109.46851 * 299.72102 * 17 15 13 20 20 H 1.48495 * 109.47332 * 59.72040 * 17 15 13 21 21 C 1.46926 * 120.63205 * 177.68291 * 7 5 4 22 22 C 1.54036 * 113.92631 * 72.00400 * 4 2 1 23 23 O 1.44173 * 85.51726 * 136.81675 * 22 4 2 24 24 C 1.44171 * 93.34502 * 335.80668 * 23 22 4 25 25 H 1.08998 * 109.47745 * 306.78065 * 1 2 3 26 26 H 1.08996 * 109.47468 * 66.78405 * 1 2 3 27 27 H 1.09010 * 109.46806 * 186.78108 * 1 2 3 28 28 H 1.09000 * 109.47269 * 239.99976 * 2 1 3 29 29 H 1.09006 * 109.46493 * 181.67654 * 3 2 1 30 30 H 1.08996 * 109.46795 * 301.67366 * 3 2 1 31 31 H 1.08996 * 109.47001 * 61.67910 * 3 2 1 32 32 H 1.08999 * 109.59018 * 113.79884 * 8 7 5 33 33 H 1.09001 * 109.58711 * 353.37195 * 8 7 5 34 34 H 1.09001 * 109.50238 * 185.41254 * 9 8 7 35 35 H 1.09006 * 109.52851 * 65.33048 * 9 8 7 36 36 H 1.09000 * 109.45759 * 301.34111 * 10 9 8 37 37 H 1.09004 * 109.45943 * 181.38892 * 10 9 8 38 38 H 0.97003 * 120.00565 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.58599 * 6.63042 * 21 7 5 40 40 H 1.09002 * 109.58609 * 246.20052 * 21 7 5 41 41 H 1.09003 * 113.86517 * 250.96354 * 22 4 2 42 42 H 1.08993 * 113.86242 * 22.66708 * 22 4 2 43 43 H 1.09000 * 113.86571 * 270.05013 * 24 23 22 44 44 H 1.09000 * 113.87196 * 138.33982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5809 -0.0749 2.5309 6 8 0.6642 -0.5595 3.1600 7 7 2.1891 1.0416 2.9781 8 6 3.3331 1.6121 2.2540 9 6 4.5002 1.7824 3.2316 10 6 4.0384 2.6127 4.4314 11 6 2.9055 1.8810 5.1545 12 1 3.2544 0.9006 5.4792 13 6 2.4733 2.6838 6.3544 14 1 1.4552 3.0362 6.4302 15 6 3.3777 2.9687 7.3554 16 7 4.6173 2.5393 7.2633 17 14 2.8401 3.9573 8.8464 18 1 3.9890 4.1196 9.7731 19 1 2.3645 5.2942 8.4085 20 1 1.7394 3.2440 9.5427 21 6 1.7203 1.7118 4.1987 22 6 1.8381 -2.2479 1.2155 23 8 3.1780 -2.3230 1.7424 24 6 3.5481 -1.0331 1.2154 25 1 -0.3634 0.6153 0.8230 26 1 -0.3634 0.4051 -0.9444 27 1 -0.3633 -1.0206 0.1214 28 1 1.8933 -0.5138 -0.8900 29 1 3.1295 1.4427 -0.0301 30 1 1.6522 1.9649 -0.8746 31 1 1.7013 1.9476 0.9046 32 1 3.0575 2.5827 1.8415 33 1 3.6270 0.9402 1.4476 34 1 5.3228 2.2930 2.7308 35 1 4.8346 0.8030 3.5740 36 1 3.6818 3.5830 4.0858 37 1 4.8738 2.7562 5.1168 38 1 5.2536 2.7393 7.9677 39 1 0.9500 1.1056 4.6755 40 1 1.3130 2.6905 3.9448 41 1 1.0728 -2.6069 1.9037 42 1 1.7358 -2.6570 0.2104 43 1 3.9680 -1.0713 0.2102 44 1 4.1390 -0.4286 1.9034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824747074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:39 Heat of formation + Delta-G solvation = -36.469698 kcal Electronic energy + Delta-G solvation = -24312.942845 eV Core-core repulsion = 21039.120101 eV Total energy + Delta-G solvation = -3273.822743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 5.87 seconds Orbital eigenvalues (eV) -41.65998 -38.70559 -36.77761 -35.51228 -33.44899 -31.35220 -30.53425 -29.01305 -27.75223 -26.19204 -25.07861 -24.93764 -22.02956 -21.90989 -21.33389 -19.44923 -17.93809 -16.78168 -16.39528 -16.30002 -16.19909 -15.34669 -14.84655 -14.70312 -14.38582 -13.88621 -13.62998 -13.24302 -13.16911 -12.83747 -12.75472 -12.62888 -12.53786 -12.26234 -12.01566 -11.77404 -11.38383 -11.06565 -10.94740 -10.78622 -10.76523 -10.58480 -10.34538 -10.24342 -9.95452 -9.84315 -9.76789 -9.47467 -9.19207 -8.82835 -8.39371 -7.93196 -6.02247 -4.09674 2.88082 3.31017 3.35006 3.35809 3.41339 3.72204 3.99597 4.41604 4.47882 4.69584 4.86343 5.03261 5.14422 5.15134 5.25881 5.30784 5.35052 5.53072 5.53890 5.61019 5.65871 5.70628 5.78721 5.81750 5.93167 5.95627 6.05479 6.12178 6.17822 6.22993 6.29595 6.36529 6.45227 6.62970 6.78190 6.93363 7.13725 7.30996 7.67898 7.89199 7.97513 8.06283 8.35979 8.58716 8.93599 9.55228 11.03199 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.005001 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.614176 B = 5597.310172 C = 5669.535558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.170 4.170 4 C -0.148 4.148 5 C 0.542 3.458 6 O -0.543 6.543 7 N -0.596 5.596 8 C 0.088 3.912 9 C -0.142 4.142 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.030 0.970 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.287 1.287 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.117 3.883 22 C 0.058 3.942 23 O -0.374 6.374 24 C 0.033 3.967 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -3.177 -17.197 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.227 4.227 4 C -0.151 4.151 5 C 0.328 3.672 6 O -0.421 6.421 7 N -0.327 5.327 8 C -0.035 4.035 9 C -0.180 4.180 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.048 0.952 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.004 4.004 22 C -0.019 4.019 23 O -0.292 6.292 24 C -0.043 4.043 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.008 -3.609 -16.581 17.088 hybrid contribution -0.199 0.765 0.700 1.056 sum -2.207 -2.844 -15.882 16.284 Atomic orbital electron populations 1.21805 0.94244 1.02429 1.01934 1.21100 0.96852 0.96581 0.95199 1.22571 1.01306 0.95625 1.03169 1.23953 0.97447 0.97812 0.95915 1.19416 0.82537 0.80311 0.84917 1.90657 1.30348 1.63021 1.58076 1.48226 1.31417 1.25929 1.27146 1.22649 0.86958 0.98681 0.95177 1.22109 0.96117 1.01580 0.98172 1.21617 1.02434 0.96285 0.94574 1.18964 0.90196 0.96868 0.91834 0.95208 1.21027 0.96657 1.34069 1.03621 0.92563 1.24929 0.94920 0.95821 0.98077 1.69859 1.03405 1.45781 1.33679 0.86638 0.78109 0.80534 0.82609 1.21298 1.20280 1.20223 1.22030 0.99554 0.95308 0.83496 1.23944 0.86453 0.91690 0.99849 1.89752 1.27731 1.38219 1.73519 1.24525 0.94603 0.84776 1.00426 0.92246 0.92426 0.92317 0.90101 0.91681 0.92388 0.90748 0.91376 0.89405 0.92328 0.92305 0.94580 0.88585 0.92899 0.90287 0.92639 0.87904 0.89649 0.89421 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.84 37.16 0.33 -1.26 16 2 C -0.08 -0.81 2.38 -90.62 -0.22 -1.03 16 3 C -0.17 -1.70 7.11 37.16 0.26 -1.43 16 4 C -0.15 -1.99 0.30 -154.58 -0.05 -2.03 16 5 C 0.54 9.77 5.33 -10.99 -0.06 9.71 16 6 O -0.54 -11.74 15.59 5.56 0.09 -11.65 16 7 N -0.60 -10.81 2.46 -172.76 -0.43 -11.23 16 8 C 0.09 1.30 2.99 -3.71 -0.01 1.29 16 9 C -0.14 -2.46 5.81 -26.61 -0.15 -2.61 16 10 C -0.11 -2.45 4.96 -26.69 -0.13 -2.59 16 11 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 12 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -24.96 11.31 55.43 0.63 -24.33 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.12 2.51 5.66 -3.71 -0.02 2.49 16 22 C 0.06 0.76 7.79 37.61 0.29 1.06 16 23 O -0.37 -5.90 12.40 -35.23 -0.44 -6.34 16 24 C 0.03 0.42 6.62 37.61 0.25 0.67 16 25 H 0.06 0.78 7.66 -51.93 -0.40 0.39 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 7.70 -51.92 -0.40 0.22 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.57 6.03 -51.93 -0.31 0.26 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.91 4.91 -51.93 -0.26 0.66 16 32 H 0.07 0.93 6.75 -51.93 -0.35 0.58 16 33 H 0.09 1.07 1.92 -51.93 -0.10 0.97 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.50 7.45 -51.93 -0.39 1.12 16 42 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.11 1.48 4.94 -51.93 -0.26 1.22 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -30.72 323.82 -7.27 -37.99 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.88 Total: 2.11 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.10 Total: -7.51 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.20 Total: -35.57 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.35 Total: -17.99 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.72 -7.27 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824747074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.516 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.87 seconds